MD04G1113800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0022292
Physical Location & Seq
Forward (+)
19955101 .. 19957171
2071 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1113800.v1.1.491

Sequence Viewer

Length: 189 bp
ATGATCCACATCTCAGGGTTAGGCGCTGATGAGCACATTGAACTATCCATGTGGCTGAGCCCTCACAGCCCAGGCACAACGACACAATTATCAGGGGCGCGCTCGTTGCAGGCGAGCGGGACGGTGGTGGTGTTTATGATTGGTGGAAGACTATCAACAAAGCATGCACTTTATGGAATGGAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

6.54

Weight (kDa)

6.37

Isoelectric Point (pI)

52.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022292)

Species Orthologous Gene IDs
malus_domestica MD04G1113800.v1.1 MD06G1057800.v1.1 MD10G1107400.v1.1
pyrus_communis pycom10g03930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 117
AccII CGCG 1 cut(s) 100
AciI CCGC 1 cut(s) 117
AgsI TTSAA 1 cut(s) 41
AjnI CCWGG 1 cut(s) 70
AluBI AGCT 1 cut(s) 185
AluI AGCT 1 cut(s) 185
Alw21I GWGCWC 1 cut(s) 36
AspLEI GCGC 3 cut(s) 26, 100, 102
BanII GRGCYC 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 72
BfoI RGCGCY 1 cut(s) 27
BlpI GCTNAGC 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 72
BpiI GAAGAC 1 cut(s) 154
Bpu1102I GCTNAGC 1 cut(s) 56
BsaBI GATNNNNATC 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 70
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 70
BseJI GATNNNNATC 1 cut(s) 8
BseMII CTCAG 2 cut(s) 27, 47
BsePI GCGCGC 1 cut(s) 98
Bsh1236I CGCG 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 36
BslFI GGGAC 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 133
Bsp1286I GDGCHC 2 cut(s) 36, 62
Bsp143I GATC 1 cut(s) 3
Bsp1720I GCTNAGC 1 cut(s) 56
BspACI CCGC 1 cut(s) 117
BspCNI CTCAG 2 cut(s) 26, 48
BspFNI CGCG 1 cut(s) 100
BsrBI CCGCTC 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 70
BssHII GCGCGC 1 cut(s) 98
BssMI GATC 1 cut(s) 3
Bst2UI CCWGG 1 cut(s) 72
Bst4CI ACNGT 1 cut(s) 124
BstC8I GCNNGC 4 cut(s) 100, 111, 115, 165
BstDEI CTNAG 3 cut(s) 13, 56, 186
BstFNI CGCG 1 cut(s) 100
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 3 cut(s) 26, 100, 102
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 2 cut(s) 66, 106
BstNI CCWGG 1 cut(s) 72
BstNSI RCATGY 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 70
BstUI CGCG 1 cut(s) 100
BstV2I GAAGAC 1 cut(s) 154
Cac8I GCNNGC 4 cut(s) 100, 111, 115, 165
CfoI GCGC 3 cut(s) 26, 100, 102
CviAII CATG 2 cut(s) 49, 164
CviJI RGCY 4 cut(s) 55, 60, 69, 185
CviKI_1 RGCY 4 cut(s) 55, 60, 69, 185
DdeI CTNAG 3 cut(s) 13, 56, 186
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 62
EcoRII CCWGG 1 cut(s) 70
EcoT38I GRGCYC 1 cut(s) 62
FaeI CATG 2 cut(s) 52, 167
FaiI YATR 4 cut(s) 50, 137, 165, 174
FaqI GGGAC 1 cut(s) 133
FatI CATG 2 cut(s) 48, 163
FauI CCCGC 1 cut(s) 110
FriOI GRGCYC 1 cut(s) 62
GlaI GCGC 3 cut(s) 25, 99, 101
HaeII RGCGCY 1 cut(s) 27
HhaI GCGC 3 cut(s) 26, 100, 102
Hin1II CATG 2 cut(s) 52, 167
Hin6I GCGC 3 cut(s) 24, 98, 100
HinP1I GCGC 3 cut(s) 24, 98, 100
HindIII AAGCTT 1 cut(s) 183
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4V TGCA 2 cut(s) 109, 167
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 106
HpyF3I CTNAG 3 cut(s) 13, 56, 186
Hsp92II CATG 2 cut(s) 52, 167
HspAI GCGC 3 cut(s) 24, 98, 100
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 4 cut(s) 57, 78, 84, 95
MalI GATC 1 cut(s) 5
MbiI CCGCTC 1 cut(s) 117
MboI GATC 1 cut(s) 3
MboII GAAGA 1 cut(s) 159
MhlI GDGCHC 2 cut(s) 36, 62
MluCI AATT 1 cut(s) 86
MnlI CCTC 1 cut(s) 72
MspR9I CCNGG 1 cut(s) 72
MvaI CCWGG 1 cut(s) 72
MvnI CGCG 1 cut(s) 100
MwoI GCNNNNNNNGC 2 cut(s) 66, 106
NdeII GATC 1 cut(s) 3
NlaIII CATG 2 cut(s) 52, 167
NspI RCATGY 1 cut(s) 167
PaeI GCATGC 1 cut(s) 167
PauI GCGCGC 1 cut(s) 98
PcsI WCGNNNNNNNCGW 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PteI GCGCGC 1 cut(s) 98
Sau3AI GATC 1 cut(s) 3
ScrFI CCNGG 1 cut(s) 72
SduI GDGCHC 2 cut(s) 36, 62
SetI ASST 1 cut(s) 187
SphI GCATGC 1 cut(s) 167
Sse9I AATT 1 cut(s) 86
SsiI CCGC 1 cut(s) 117
StyD4I CCNGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 124
TasI AATT 1 cut(s) 86
XceI RCATGY 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.