MD10G1107400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0022292
Physical Location & Seq
Reverse (-)
17589895 .. 17590219
325 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1107400.v1.1.491

Sequence Viewer

Length: 174 bp
ATGAAAACTCCAACGCCGGTCGAAGGGAAGCTGGTGGTGTTTATGATCGGTGGAAGATTATCAACAAAGCGTGCACTTTGTGGAAGGGAAGCTTGGAGAGAGCCATGGTTGACATGCCTAGTGGAAGGGGCGTCTCAGAAATTGGTGACAAAGCAATGGCAATTTACAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

58

Amino Acids

6.52

Weight (kDa)

10.19

Isoelectric Point (pI)

28.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022292)

Species Orthologous Gene IDs
malus_domestica MD04G1113800.v1.1 MD06G1057800.v1.1 MD10G1107400.v1.1
pyrus_communis pycom10g03930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 131
AdeI CACNNNGTG 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 23
AjuI GAANNNNNNNTTGG 2 cut(s) 76, 108
AluBI AGCT 2 cut(s) 31, 92
AluI AGCT 2 cut(s) 31, 92
Alw21I GWGCWC 1 cut(s) 76
Alw26I GTCTC 1 cut(s) 138
Alw44I GTGCAC 1 cut(s) 72
ApaLI GTGCAC 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 157
BaeGI GKGCMC 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 1 cut(s) 119
BsaHI GRCGYC 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 104
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse118I RCCGGY 1 cut(s) 16
Bse3DI GCAATG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 104
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMI GCAATG 1 cut(s) 161
BseMII CTCAG 1 cut(s) 149
BseSI GKGCMC 1 cut(s) 76
Bsh1285I CGRYCG 1 cut(s) 21
BsiEI CGRYCG 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 76
BsiSI CCGG 1 cut(s) 17
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 138
BsmBI CGTCTC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 76
Bsp143I GATC 1 cut(s) 45
Bsp19I CCATGG 1 cut(s) 104
BspCNI CTCAG 1 cut(s) 148
BsrDI GCAATG 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 104
BssMI GATC 1 cut(s) 45
BssNI GRCGYC 1 cut(s) 131
BssT1I CCWWGG 1 cut(s) 104
BstACI GRCGYC 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 135
BstDSI CCRYGG 1 cut(s) 104
BstKTI GATC 1 cut(s) 48
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 1 cut(s) 45
BstMCI CGRYCG 1 cut(s) 21
BstNSI RCATGY 1 cut(s) 117
BstSLI GKGCMC 1 cut(s) 76
BtgI CCRYGG 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 72
Cfr10I RCCGGY 1 cut(s) 16
CseI GACGC 1 cut(s) 120
CviAII CATG 2 cut(s) 105, 114
CviJI RGCY 3 cut(s) 31, 92, 103
CviKI_1 RGCY 3 cut(s) 31, 92, 103
DdeI CTNAG 1 cut(s) 135
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
DraIII CACNNNGTG 1 cut(s) 80
Eco130I CCWWGG 1 cut(s) 104
EcoT14I CCWWGG 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 104
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 2 cut(s) 108, 117
FaiI YATR 3 cut(s) 44, 106, 115
FalI AAGNNNNNCTT 2 cut(s) 76, 108
FatI CATG 2 cut(s) 104, 113
FspBI CTAG 1 cut(s) 119
HapII CCGG 1 cut(s) 17
HgaI GACGC 1 cut(s) 120
Hin1I GRCGYC 1 cut(s) 131
Hin1II CATG 2 cut(s) 108, 117
HincII GTYRAC 1 cut(s) 111
HindII GTYRAC 1 cut(s) 111
HindIII AAGCTT 1 cut(s) 90
HpaII CCGG 1 cut(s) 17
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 2 cut(s) 74, 111
Hpy188I TCNGA 1 cut(s) 138
Hpy8I GTNNAC 2 cut(s) 74, 111
HpyAV CCTTC 3 cut(s) 17, 78, 119
HpyCH4V TGCA 1 cut(s) 74
HpyF3I CTNAG 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 131
Hsp92II CATG 2 cut(s) 108, 117
Kzo9I GATC 1 cut(s) 45
LpnPI CCDG 2 cut(s) 17, 30
MaeI CTAG 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 145
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 1 cut(s) 66
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 2 cut(s) 140, 161
MmeI TCCRAC 1 cut(s) 35
MspI CCGG 1 cut(s) 17
NcoI CCATGG 1 cut(s) 104
NdeII GATC 1 cut(s) 45
NlaIII CATG 2 cut(s) 108, 117
NmuCI GTSAC 1 cut(s) 145
NspI RCATGY 1 cut(s) 117
Sau3AI GATC 1 cut(s) 45
SduI GDGCHC 1 cut(s) 76
SetI ASST 2 cut(s) 33, 94
SgeI CNNG 7 cut(s) 29, 44, 83, 105, 117, 126, 131
Sse9I AATT 2 cut(s) 140, 161
SspMI CTAG 1 cut(s) 119
StyI CCWWGG 1 cut(s) 104
TaqI TCGA 1 cut(s) 21
TasI AATT 2 cut(s) 140, 161
TseFI GTSAC 1 cut(s) 145
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 1 cut(s) 17
VneI GTGCAC 1 cut(s) 72
XceI RCATGY 1 cut(s) 117
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.