Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0022402

Physical Location & Seq

Genomic Coordinates Reverse (-)

23568955 .. 23570163

Gene Structure 1209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1147600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTTTATTCACATTTCATCCATTAAATGGAATGAATGCTGTGAAAGACTGGCTTACTATGGGATTAACACAAATCTTGTTAATTACCTCAAATTTCAACTGAACCAGAGGAATGTGGTTGCTGTCACTAATGTCACAAATTGGTCAGGTACATGCAATGTCACACCATTTCTTGGAGCCTTCCTAGCTGATGCATACCTAGGAAGATATCGGACAATTGCTGCCTTCTCCATCATCTATGTTTTTCTGGGCTTCGGCATCCCAGCCGTGGCTATGGCACTTGCTGTTGTGAGCTTCTTTTCCGGCACTCGGTTGTACAGAAACCAGATTCCCGGTGGGAGTCCCCTCACTCGCATTTGCCAGGTGCTTGTTGCATCCTTCAGGAAGTTCCGAGTTCGAGTGCCTCGTGACAAGTCGCTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006807 GO:0006810 GO:0006857 GO:0008150 GO:0008152 GO:0009506 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015833 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022857 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0035672 GO:0035673 GO:0040007 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055044 GO:0055085 GO:0060560 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

142

Amino Acids

15.88

Weight (kDa)

10.1

Isoelectric Point (pI)

12.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	83 - 134	2.7e-11	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022402)

Species	Orthologous Gene IDs
malus_domestica	MD04G1147600.v1.1
pyrus_communis	pycom04g13320
rosa_samantha	Rh5AG448900 Rh5AG449000

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	27, 173
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	364
AfaI	GTAC	2 cut(s)	151, 317
AfiI	CCNNNNNNNGG	4 cut(s)	27, 173, 268, 309
AgsI	TTSAA	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	360
AluBI	AGCT	2 cut(s)	188, 294
AluI	AGCT	2 cut(s)	188, 294
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	1 cut(s)	92
AspA2I	CCTAGG	1 cut(s)	199
AsuC2I	CCSGG	1 cut(s)	333
AvrII	CCTAGG	1 cut(s)	199
BauI	CACGAG	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	1 cut(s)	239
BceAI	ACGGC	1 cut(s)	251
BciT130I	CCWGG	1 cut(s)	362
BcnI	CCSGG	1 cut(s)	333
BfaI	CTAG	2 cut(s)	185, 200
BisI	GCNGC	1 cut(s)	222
BlnI	CCTAGG	1 cut(s)	199
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	2 cut(s)	333, 362
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	2 cut(s)	333, 362
BmsI	GCATC	3 cut(s)	181, 267, 383
BpuMI	CCSGG	1 cut(s)	333
BsaJI	CCNNGG	2 cut(s)	199, 267
Bsc4I	CCNNNNNNNGG	4 cut(s)	27, 173, 268, 309
Bse1I	ACTGG	1 cut(s)	54
Bse3DI	GCAATG	1 cut(s)	163
BseBI	CCWGG	1 cut(s)	362
BseDI	CCNNGG	2 cut(s)	199, 267
BseGI	GGATG	3 cut(s)	17, 258, 374
BseLI	CCNNNNNNNGG	4 cut(s)	27, 173, 268, 309
BseMI	GCAATG	1 cut(s)	163
BseNI	ACTGG	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	208
BseYI	CCCAGC	1 cut(s)	262
BsiSI	CCGG	2 cut(s)	303, 333
BslFI	GGGAC	1 cut(s)	327
BslI	CCNNNNNNNGG	4 cut(s)	27, 173, 268, 309
BsmFI	GGGAC	1 cut(s)	327
BsmI	GAATGC	1 cut(s)	41
Bsp1407I	TGTACA	1 cut(s)	315
BspLI	GGNNCC	1 cut(s)	178
BsrDI	GCAATG	1 cut(s)	163
BsrGI	TGTACA	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	54
BssECI	CCNNGG	2 cut(s)	199, 267
BssSI	CACGAG	1 cut(s)	405
BssT1I	CCWWGG	1 cut(s)	199
Bst2BI	CACGAG	1 cut(s)	405
Bst2UI	CCWGG	1 cut(s)	362
BstAUI	TGTACA	1 cut(s)	315
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	3 cut(s)	17, 258, 374
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNI	CCWGG	1 cut(s)	362
BstNSI	RCATGY	1 cut(s)	156
BstSCI	CCNGG	2 cut(s)	331, 360
BstV1I	GCAGC	1 cut(s)	208
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	3 cut(s)	17, 258, 374
Csp6I	GTAC	2 cut(s)	150, 316
CviAII	CATG	1 cut(s)	153
CviJI	RGCY	7 cut(s)	53, 179, 188, 252, 266, 272, 294
CviKI_1	RGCY	7 cut(s)	53, 179, 188, 252, 266, 272, 294
CviQI	GTAC	2 cut(s)	150, 316
Eco130I	CCWWGG	1 cut(s)	199
Eco32I	GATATC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	364
EcoRII	CCWGG	1 cut(s)	360
EcoRV	GATATC	1 cut(s)	209
EcoT14I	CCWWGG	1 cut(s)	199
EcoT22I	ATGCAT	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	199
FaeI	CATG	1 cut(s)	156
FaiI	YATR	5 cut(s)	60, 154, 196, 240, 275
FalI	AAGNNNNNCTT	3 cut(s)	37, 69, 404
FaqI	GGGAC	1 cut(s)	327
FatI	CATG	1 cut(s)	152
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	3 cut(s)	4, 245, 361
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	2 cut(s)	185, 200
GluI	GCNGC	1 cut(s)	222
GsaI	CCCAGC	1 cut(s)	266
HapII	CCGG	2 cut(s)	303, 333
Hin1II	CATG	1 cut(s)	156
HinfI	GANTC	2 cut(s)	328, 340
HpaII	CCGG	2 cut(s)	303, 333
Hpy188I	TCNGA	2 cut(s)	213, 392
Hpy188III	TCNNGA	2 cut(s)	382, 407
HpyAV	CCTTC	3 cut(s)	190, 235, 388
HpyCH4V	TGCA	3 cut(s)	156, 194, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
Hsp92II	CATG	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	176
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	3 cut(s)	181, 267, 383
MaeI	CTAG	2 cut(s)	185, 200
MaeIII	GTNAC	4 cut(s)	124, 133, 160, 407
MboII	GAAGA	1 cut(s)	216
MfeI	CAATTG	1 cut(s)	216
MluCI	AATT	4 cut(s)	82, 92, 139, 216
MlyI	GAGTC	1 cut(s)	349
MnlI	CCTC	4 cut(s)	98, 102, 356, 414
Mph1103I	ATGCAT	1 cut(s)	196
MseI	TTAA	3 cut(s)	24, 66, 81
MspI	CCGG	2 cut(s)	303, 333
MspR9I	CCNGG	2 cut(s)	333, 362
MunI	CAATTG	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	41
MvaI	CCWGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	1 cut(s)	185
NciI	CCSGG	1 cut(s)	333
NlaIII	CATG	1 cut(s)	156
NlaIV	GGNNCC	1 cut(s)	178
NmuCI	GTSAC	4 cut(s)	124, 133, 160, 407
NsiI	ATGCAT	1 cut(s)	196
NspI	RCATGY	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	1 cut(s)	403
PctI	GAATGC	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	328
PflMI	CCANNNNNTGG	2 cut(s)	27, 173
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	360
PspFI	CCCAGC	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	1 cut(s)	178
RsaI	GTAC	2 cut(s)	151, 317
RsaNI	GTAC	2 cut(s)	150, 316
SaqAI	TTAA	3 cut(s)	24, 66, 81
SatI	GCNGC	1 cut(s)	222
SchI	GAGTC	1 cut(s)	349
ScrFI	CCNGG	2 cut(s)	333, 362
SetI	ASST	6 cut(s)	90, 151, 190, 201, 296, 366
SfaNI	GCATC	3 cut(s)	181, 267, 383
Sse9I	AATT	4 cut(s)	82, 92, 139, 216
SspMI	CTAG	2 cut(s)	185, 200
StyD4I	CCNGG	2 cut(s)	331, 360
StyI	CCWWGG	1 cut(s)	199
TaqI	TCGA	1 cut(s)	397
TasI	AATT	4 cut(s)	82, 92, 139, 216
TatI	WGTACW	1 cut(s)	315
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	3 cut(s)	24, 66, 81
Tru9I	TTAA	3 cut(s)	24, 66, 81
TseFI	GTSAC	4 cut(s)	124, 133, 160, 407
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	4 cut(s)	124, 133, 160, 407
TspDTI	ATGAA	2 cut(s)	6, 48
Van91I	CCANNNNNTGG	2 cut(s)	27, 173
XapI	RAATTY	1 cut(s)	92
XceI	RCATGY	1 cut(s)	156
XcmI	CCANNNNNNNNNTGG	1 cut(s)	332
XmaJI	CCTAGG	1 cut(s)	199
XspI	CTAG	2 cut(s)	185, 200
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.