Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0022402

Physical Location & Seq

Genomic Coordinates Reverse (-)

77069743 .. 77073695

Gene Structure 3953 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG449000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGGAGAAGATGATGTGTACACAAAAGATGGGAGGGTTGTACCCATTGCAGAAGATGAGGAAGTCACCAAAGATGGGACAGTGGATTACAAAGGAAACCCAGCTAACAAAAAAGTCACAGGAACCTGGAAAGCCTGCCCTTTTATCCTGGGGACTGAATGCTGTGAAAGATTGGCATACTATGGGATGAGCTCAAATCTGATCACTTATTTCAAGGGACATCTGCACCAAAGCAGTGCTAAAGCAGCTAAGAGCAACTCAAATTGGAGTGGAACATGTTATCTCACTCCCTTACTTGGAGCATTTTTGGCTGATGCTTATTTGGGAAGATATAAGACTATTGCCTTTTTCTCAGTCATCTATGTCATTGGGATGACACTTTTGACATTGTCAGCATCAATCCCAGGCATGAAGCCAACCTGTGTTTCAAAAGATGATTGCTATGCAAACAGTGGACAAACTGCAGCATGCTTCATAGCTCTTTACCTTATAGCATTGGGGACTGGTGGAATTAAGCCTTGTGTCTCATCCTATGGAGCAGACCAGTTTGATGATGATGATGAGGTTGAGAAGAAGCACAAAGGTTCTTTCTTCAACTGGTTCTATTTTTCCATCAATGTTGGTGCTTTGATTGCGAGTTCTGTGCTGGTGTGGGTTCAAATGAATGAAGGTTGGTCATGGGGTTTTGGCATACCAGCAGTTGCCATGGCAATTGCTGTAGTGAGTTTCTTTTCGGGTACTCGGTTATATAGGAATCAGCAGCCAGGAGGTAGCCCGCTGACCCGAATAATTCAGGTGCTGGTGGCATCTGTGAGAAAACACAAAGTCATAGTACCCGAAGACAAGTCCCTTTTGTATGAGATCGCCGATGCAGAGTCTGTCATCAAAGGAAGCCGCAAGCTGGATCACACAAATGAATTTAGTTTCTTTGACAAAGCAGCTGTTGAGGAACCAACAGACCATATAAAGGACTCGATAGACCCATGGAGACTTGCTACAGTTACCCAAGTGGAGGAGCTAAAGTCAATTATAAGGTTACTTCCTGTTTGGGCCACTGGTTACCAAGCGGCGAAATCGTTGAATGCCCAGAAGTTCCTGAAGAAAATAGGATGCGGTAAAGAGGACTATCACTGGAAAAAAAATCGGCAAGGCTTTACTGTGCACGTACACGCTGGGTGGAGTAGCTTGGCTCTACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006807 GO:0006810 GO:0006857 GO:0008150 GO:0008152 GO:0009506 GO:0015833 GO:0016020 GO:0022857 GO:0030054 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

399

Amino Acids

44.02

Weight (kDa)

7.96

Isoelectric Point (pI)

24.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	63 - 259	5.7e-10	Major Facilitator Superfamily
PTR2	PF00854	111 - 352	4e-66	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022402)

Species	Orthologous Gene IDs
malus_domestica	MD04G1147600.v1.1
pyrus_communis	pycom04g13320
rosa_samantha	Rh5AG448900 Rh5AG449000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1031
AciI	CCGC	4 cut(s)	776, 895, 1067, 1113
AclWI	GGATC	1 cut(s)	912
AcsI	RAATTY	1 cut(s)	917
AcuI	CTGAAG	1 cut(s)	1118
AfaI	GTAC	5 cut(s)	20, 42, 739, 834, 1167
AfiI	CCNNNNNNNGG	5 cut(s)	75, 296, 901, 967, 1012
AflIII	ACRYGT	1 cut(s)	275
AgsI	TTSAA	5 cut(s)	214, 429, 595, 659, 1081
AjnI	CCWGG	4 cut(s)	125, 147, 403, 763
AjuI	GAANNNNNNNTTGG	2 cut(s)	409, 441
AluBI	AGCT	8 cut(s)	104, 192, 248, 479, 901, 941, 1018, 1185
AluI	AGCT	8 cut(s)	104, 192, 248, 479, 901, 941, 1018, 1185
Alw21I	GWGCWC	2 cut(s)	194, 1164
Alw26I	GTCTC	2 cut(s)	529, 982
Alw44I	GTGCAC	1 cut(s)	1160
AlwI	GGATC	1 cut(s)	912
AlwNI	CAGNNNCTG	2 cut(s)	799, 878
AoxI	GGCC	1 cut(s)	1050
ApaLI	GTGCAC	1 cut(s)	1160
ApeKI	GCWGC	4 cut(s)	245, 464, 760, 938
ApoI	RAATTY	1 cut(s)	917
AspS9I	GGNCC	1 cut(s)	1050
AsuHPI	GGTGA	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	1164
BanII	GRGCYC	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	846
Bbv12I	GWGCWC	2 cut(s)	194, 1164
BbvI	GCAGC	4 cut(s)	257, 476, 772, 950
BccI	CCATC	3 cut(s)	23, 68, 620
BcgI	CGANNNNNNTGC	2 cut(s)	625, 659
BciT130I	CCWGG	4 cut(s)	127, 149, 405, 765
BclI	TGATCA	1 cut(s)	201
BcoDI	GTCTC	2 cut(s)	529, 982
BfmI	CTRYAG	3 cut(s)	462, 717, 996
BisI	GCNGC	6 cut(s)	246, 465, 761, 895, 939, 1068
BlsI	GCNGC	6 cut(s)	247, 466, 762, 896, 940, 1069
Bme1390I	CCNGG	4 cut(s)	127, 149, 405, 765
BmgT120I	GGNCC	1 cut(s)	1050
BmiI	GGNNCC	2 cut(s)	124, 951
BmrFI	CCNGG	4 cut(s)	127, 149, 405, 765
BmsI	GCATC	5 cut(s)	304, 404, 815, 859, 1100
BpiI	GAAGAC	1 cut(s)	846
BsaAI	YACGTR	1 cut(s)	1165
BsaJI	CCNNGG	4 cut(s)	148, 403, 705, 983
BsaXI	ACNNNNNCTCC	2 cut(s)	1007, 1037
Bsc4I	CCNNNNNNNGG	5 cut(s)	75, 296, 901, 967, 1012
Bse1I	ACTGG	5 cut(s)	508, 544, 602, 1060, 1136
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	4 cut(s)	127, 149, 405, 765
BseDI	CCNNGG	4 cut(s)	148, 403, 705, 983
BseGI	GGATG	4 cut(s)	192, 378, 527, 1115
BseLI	CCNNNNNNNGG	5 cut(s)	75, 296, 901, 967, 1012
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	5 cut(s)	508, 544, 602, 1060, 1136
BseRI	GAGGAG	1 cut(s)	1028
BseSI	GKGCMC	1 cut(s)	1164
BseXI	GCAGC	4 cut(s)	257, 476, 772, 950
BseYI	CCCAGC	2 cut(s)	100, 1172
BsgI	GTGCAG	1 cut(s)	209
BshFI	GGCC	1 cut(s)	1052
BsiHKAI	GWGCWC	2 cut(s)	194, 1164
BslFI	GGGAC	5 cut(s)	91, 166, 231, 514, 832
BslI	CCNNNNNNNGG	5 cut(s)	75, 296, 901, 967, 1012
BsmAI	GTCTC	2 cut(s)	529, 982
BsmFI	GGGAC	5 cut(s)	91, 166, 231, 514, 832
BsmI	GAATGC	2 cut(s)	164, 1087
BsnI	GGCC	1 cut(s)	1052
Bsp1286I	GDGCHC	2 cut(s)	194, 1164
Bsp1407I	TGTACA	1 cut(s)	18
Bsp143I	GATC	3 cut(s)	201, 861, 904
Bsp19I	CCATGG	2 cut(s)	705, 983
BspACI	CCGC	4 cut(s)	776, 895, 1067, 1113
BspANI	GGCC	1 cut(s)	1052
BspCNI	CTCAG	1 cut(s)	365
BspLI	GGNNCC	2 cut(s)	124, 951
BspMAI	CTGCAG	1 cut(s)	466
BspPI	GGATC	1 cut(s)	912
BsrDI	GCAATG	1 cut(s)	45
BsrGI	TGTACA	1 cut(s)	18
BsrI	ACTGG	5 cut(s)	508, 544, 602, 1060, 1136
BssECI	CCNNGG	4 cut(s)	148, 403, 705, 983
BssMI	GATC	3 cut(s)	201, 861, 904
BssT1I	CCWWGG	2 cut(s)	705, 983
Bst2UI	CCWGG	4 cut(s)	127, 149, 405, 765
Bst4CI	ACNGT	4 cut(s)	82, 452, 1000, 1159
BstAUI	TGTACA	1 cut(s)	18
BstBAI	YACGTR	1 cut(s)	1165
BstC8I	GCNNGC	4 cut(s)	136, 469, 776, 899
BstDEI	CTNAG	2 cut(s)	249, 352
BstDSI	CCRYGG	2 cut(s)	705, 983
BstEII	GGTNACC	1 cut(s)	1058
BstF5I	GGATG	4 cut(s)	192, 378, 527, 1115
BstKTI	GATC	3 cut(s)	204, 864, 907
BstMAI	GTCTC	2 cut(s)	529, 982
BstMBI	GATC	3 cut(s)	201, 861, 904
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 308, 632
BstNI	CCWGG	4 cut(s)	127, 149, 405, 765
BstNSI	RCATGY	2 cut(s)	279, 471
BstPI	GGTNACC	1 cut(s)	1058
BstSCI	CCNGG	4 cut(s)	125, 147, 403, 763
BstSFI	CTRYAG	3 cut(s)	462, 717, 996
BstSLI	GKGCMC	1 cut(s)	1164
BstV1I	GCAGC	4 cut(s)	257, 476, 772, 950
BstV2I	GAAGAC	1 cut(s)	846
BsuRI	GGCC	1 cut(s)	1052
BtgI	CCRYGG	2 cut(s)	705, 983
BtsCI	GGATG	4 cut(s)	192, 378, 527, 1115
BtsI	GCAGTG	1 cut(s)	241
BtsIMutI	CAGTG	5 cut(s)	87, 241, 457, 1053, 1129
Cac8I	GCNNGC	4 cut(s)	136, 469, 776, 899
CaiI	CAGNNNCTG	2 cut(s)	799, 878
Cfr13I	GGNCC	1 cut(s)	1050
Csp6I	GTAC	5 cut(s)	19, 41, 738, 833, 1166
CviAII	CATG	6 cut(s)	276, 409, 468, 678, 706, 984
CviQI	GTAC	5 cut(s)	19, 41, 738, 833, 1166
DdeI	CTNAG	2 cut(s)	249, 352
DpnI	GATC	3 cut(s)	203, 863, 906
DpnII	GATC	3 cut(s)	201, 861, 904
Ecl136II	GAGCTC	1 cut(s)	192
Eco130I	CCWWGG	2 cut(s)	705, 983
Eco24I	GRGCYC	1 cut(s)	194
Eco53kI	GAGCTC	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	1118
Eco91I	GGTNACC	1 cut(s)	1058
EcoICRI	GAGCTC	1 cut(s)	192
EcoO65I	GGTNACC	1 cut(s)	1058
EcoRII	CCWGG	4 cut(s)	125, 147, 403, 763
EcoT14I	CCWWGG	2 cut(s)	705, 983
EcoT38I	GRGCYC	1 cut(s)	194
ErhI	CCWWGG	2 cut(s)	705, 983
FaeI	CATG	6 cut(s)	279, 412, 471, 681, 709, 987
FaqI	GGGAC	5 cut(s)	91, 166, 231, 514, 832
FatI	CATG	6 cut(s)	275, 408, 467, 677, 705, 983
FauI	CCCGC	1 cut(s)	783
FbaI	TGATCA	1 cut(s)	201
Fnu4HI	GCNGC	6 cut(s)	246, 465, 761, 895, 939, 1068
FokI	GGATG	4 cut(s)	199, 385, 514, 1122
FriOI	GRGCYC	1 cut(s)	194
Fsp4HI	GCNGC	6 cut(s)	246, 465, 761, 895, 939, 1068
GluI	GCNGC	6 cut(s)	246, 465, 761, 895, 939, 1068
GsaI	CCCAGC	2 cut(s)	104, 1176
HaeIII	GGCC	1 cut(s)	1052
Hin1II	CATG	6 cut(s)	279, 412, 471, 681, 709, 987
HinfI	GANTC	3 cut(s)	754, 875, 971
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	5 cut(s)	19, 21, 455, 1162, 1168
Hpy188I	TCNGA	1 cut(s)	201
Hpy188III	TCNNGA	1 cut(s)	1096
Hpy8I	GTNNAC	5 cut(s)	19, 21, 455, 1162, 1168
HpyAV	CCTTC	1 cut(s)	662
HpyCH4III	ACNGT	4 cut(s)	82, 452, 1000, 1159
HpyCH4IV	ACGT	1 cut(s)	1164
HpyCH4V	TGCA	6 cut(s)	50, 226, 446, 464, 872, 1162
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 308, 632
HpyF3I	CTNAG	2 cut(s)	249, 352
HpySE526I	ACGT	1 cut(s)	1164
Hsp92II	CATG	6 cut(s)	279, 412, 471, 681, 709, 987
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	3 cut(s)	201, 861, 904
LmnI	GCTCC	3 cut(s)	299, 536, 1015
Lsp1109I	GCAGC	4 cut(s)	257, 476, 772, 950
LweI	GCATC	5 cut(s)	304, 404, 815, 859, 1100
MaeII	ACGT	1 cut(s)	1164
MaeIII	GTNAC	5 cut(s)	64, 115, 1000, 1035, 1058
MalI	GATC	3 cut(s)	203, 863, 906
MboI	GATC	3 cut(s)	201, 861, 904
MboII	GAAGA	7 cut(s)	20, 65, 339, 583, 583, 851, 1111
MfeI	CAATTG	1 cut(s)	711
MhlI	GDGCHC	2 cut(s)	194, 1164
MluCI	AATT	6 cut(s)	262, 510, 711, 789, 917, 1026
MlyI	GAGTC	2 cut(s)	884, 965
MnlI	CCTC	7 cut(s)	27, 52, 556, 761, 940, 1006, 1114
MseI	TTAA	1 cut(s)	513
MslI	CAYNNNNRTG	2 cut(s)	371, 912
MspA1I	CMGCKG	2 cut(s)	778, 941
MspR9I	CCNGG	4 cut(s)	127, 149, 405, 765
MunI	CAATTG	1 cut(s)	711
Mva1269I	GAATGC	2 cut(s)	164, 1087
MvaI	CCWGG	4 cut(s)	127, 149, 405, 765
MwoI	GCNNNNNNNGC	3 cut(s)	245, 308, 632
NcoI	CCATGG	2 cut(s)	705, 983
NdeII	GATC	3 cut(s)	201, 861, 904
NlaIII	CATG	6 cut(s)	279, 412, 471, 681, 709, 987
NlaIV	GGNNCC	2 cut(s)	124, 951
NmuCI	GTSAC	2 cut(s)	64, 115
NspI	RCATGY	2 cut(s)	279, 471
PaeI	GCATGC	1 cut(s)	471
PciI	ACATGT	1 cut(s)	275
PctI	GAATGC	2 cut(s)	164, 1087
PfeI	GAWTC	1 cut(s)	754
PflFI	GACNNNGTC	1 cut(s)	388
PkrI	GCNGC	6 cut(s)	247, 466, 762, 896, 940, 1069
PleI	GAGTC	2 cut(s)	883, 965
PpsI	GAGTC	2 cut(s)	883, 965
Ppu21I	YACGTR	1 cut(s)	1165
PscI	ACATGT	1 cut(s)	275
PsiI	TTATAA	1 cut(s)	1031
Psp124BI	GAGCTC	1 cut(s)	194
Psp6I	CCWGG	4 cut(s)	125, 147, 403, 763
PspEI	GGTNACC	1 cut(s)	1058
PspFI	CCCAGC	2 cut(s)	100, 1172
PspGI	CCWGG	4 cut(s)	125, 147, 403, 763
PspN4I	GGNNCC	2 cut(s)	124, 951
PspPI	GGNCC	1 cut(s)	1050
PstI	CTGCAG	1 cut(s)	466
PstNI	CAGNNNCTG	2 cut(s)	799, 878
PsyI	GACNNNGTC	1 cut(s)	388
PvuII	CAGCTG	1 cut(s)	941
RsaI	GTAC	5 cut(s)	20, 42, 739, 834, 1167
RsaNI	GTAC	5 cut(s)	19, 41, 738, 833, 1166
RseI	CAYNNNNRTG	2 cut(s)	371, 912
SacI	GAGCTC	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	513
SatI	GCNGC	6 cut(s)	246, 465, 761, 895, 939, 1068
Sau3AI	GATC	3 cut(s)	201, 861, 904
Sau96I	GGNCC	1 cut(s)	1050
SchI	GAGTC	2 cut(s)	884, 965
ScrFI	CCNGG	4 cut(s)	127, 149, 405, 765
SduI	GDGCHC	2 cut(s)	194, 1164
SfaNI	GCATC	5 cut(s)	304, 404, 815, 859, 1100
SfcI	CTRYAG	3 cut(s)	462, 717, 996
SmiMI	CAYNNNNRTG	2 cut(s)	371, 912
SphI	GCATGC	1 cut(s)	471
Sse9I	AATT	6 cut(s)	262, 510, 711, 789, 917, 1026
SsiI	CCGC	4 cut(s)	776, 895, 1067, 1113
SstI	GAGCTC	1 cut(s)	194
StyD4I	CCNGG	4 cut(s)	125, 147, 403, 763
StyI	CCWWGG	2 cut(s)	705, 983
TaaI	ACNGT	4 cut(s)	82, 452, 1000, 1159
TaiI	ACGT	1 cut(s)	1167
TaqI	TCGA	1 cut(s)	974
TasI	AATT	6 cut(s)	262, 510, 711, 789, 917, 1026
TatI	WGTACW	1 cut(s)	18
TauI	GCSGC	2 cut(s)	897, 1070
TfiI	GAWTC	1 cut(s)	754
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TscAI	CASTG	5 cut(s)	87, 241, 457, 1060, 1136
TseFI	GTSAC	2 cut(s)	64, 115
TseI	GCWGC	4 cut(s)	245, 464, 760, 938
Tsp45I	GTSAC	2 cut(s)	64, 115
TspDTI	ATGAA	5 cut(s)	425, 463, 677, 681, 930
TspRI	CASTG	5 cut(s)	87, 241, 457, 1060, 1136
Tth111I	GACNNNGTC	1 cut(s)	388
VneI	GTGCAC	1 cut(s)	1160
XapI	RAATTY	1 cut(s)	917
XceI	RCATGY	2 cut(s)	279, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.