Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0022402

Physical Location & Seq

Genomic Coordinates Reverse (-)

77040443 .. 77042856

Gene Structure 2414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG448900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGGAGAAGATGATGTGTATACAAAAGATGGGAGGGTTGAACCCATTGCAGAAGATGATGATGTATACACCAAAGATGGGACAGTGGATTACAAAGGAAACCCAACTAATAAAAAAGTCACAGGAACCTGGAGAGCCTGCCCTTTTATCTTAGGGACTGAATGCTGTGAAAGATTGGCATTCTATGGGATGAGCTCAAATCTGGTCTATTATTTCAAGTATCATCTGAAGCAAAGCAGTGCTAAAGCAGCTAAGAGCAACTCAAATTGGAATGGAACATGTTATCTCACTCCCTTACTTGGAGCATTTTTGGCTGATGCCTATTTGGGAAGATATAAGACTATTGCCTCTTTCTCAATCATCTATATCATTGGGATGACACTTTTGACATTGTCAGCATCAATCCCAGGCATGAAGCCAACCTGTGTTTCAAAAGATGATTGCTATGCAAACAGTGGACAAACTGCGGCATGCTTCATAGCTCTTTACCTTATAGCTTTGGGGACTGGTGGAATTAAGCCTTGTGTCTCATCCTATGGAGCAGACCAGTTTGATGATGACGATGAGGTTGAGAAGAAGCACAAAGGTTCTTTCTTCAACTGGTTCTATTTTTCCATCAATGTCGGTGCTTTGATTGCGAGTTCTTTGCTGGTGTGGGTTCAAATGAACGAAGGTTGGTCATGGGGTTTTGGCATACCAGCAGTTGCCATGGCAATTGCTGTAGTGAGTTTCTTTTCGGGTACTCGGTTATATAGGAATCAGAAGCCAGGAGGTAGCCCGCTGACCCGAATAATTCAGGTGCTGGTGGCATCTGTGAGAAAATACAAAGTCATAGTACCTGAAGACAAGTCTCTTTTGTATGAAATCGCTGATGCAGAGTCTGTCATCAAAGGAAGCCGCAAGCTGGATCACACAAATGAATTTAGATTCTTTGACAAAGCAGCTGTTGAGGAACCAACAGACCATATAAAGGACTCGATAGACCCATGGAGACTTGCTACAGTTACCCAAGTGGAGGAGCTAAAGTCAATTATAAGTGCTGAGTATTCTCAACCTTGGAGCTTTTCTATTGATTGCCCAGTGGTACACATACAAAAAGACGGTGGGATCTATCCGTTGATGGCTAAGAAGGAAATGACTGGTCCTTACAGGCTTATAGCTTTTACTTGGTGGTTTGAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006807 GO:0006810 GO:0006857 GO:0008150 GO:0008152 GO:0009506 GO:0015833 GO:0016020 GO:0022857 GO:0030054 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

394

Amino Acids

43.95

Weight (kDa)

5.84

Isoelectric Point (pI)

23.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_2	PF13347	45 - 220	3.4e-06	MFS/sugar transport protein
MFS_1	PF07690	94 - 257	1.8e-09	Major Facilitator Superfamily
PTR2	PF00854	112 - 346	6.3e-64	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022402)

Species	Orthologous Gene IDs
malus_domestica	MD04G1147600.v1.1
pyrus_communis	pycom04g13320
rosa_samantha	Rh5AG448900 Rh5AG449000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1034
AccI	GTMKAC	2 cut(s)	20, 66
AciI	CCGC	3 cut(s)	467, 779, 898
AclWI	GGATC	2 cut(s)	915, 1115
AcsI	RAATTY	1 cut(s)	920
AcuI	CTGAAG	2 cut(s)	248, 861
AfaI	GTAC	3 cut(s)	742, 837, 1086
AfiI	CCNNNNNNNGG	5 cut(s)	78, 299, 904, 970, 1015
AflIII	ACRYGT	1 cut(s)	278
AgsI	TTSAA	6 cut(s)	41, 217, 432, 598, 662, 1178
AjnI	CCWGG	3 cut(s)	128, 406, 766
AjuI	GAANNNNNNNTTGG	2 cut(s)	412, 444
AluBI	AGCT	9 cut(s)	195, 251, 482, 497, 904, 944, 1021, 1062, 1160
AluI	AGCT	9 cut(s)	195, 251, 482, 497, 904, 944, 1021, 1062, 1160
Alw21I	GWGCWC	1 cut(s)	197
Alw26I	GTCTC	3 cut(s)	532, 855, 985
AlwI	GGATC	2 cut(s)	915, 1115
AlwNI	CAGNNNCTG	2 cut(s)	802, 881
ApeKI	GCWGC	2 cut(s)	248, 941
ApoI	RAATTY	1 cut(s)	920
AspS9I	GGNCC	1 cut(s)	1142
AvaII	GGWCC	1 cut(s)	1142
BanII	GRGCYC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	849
Bbv12I	GWGCWC	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	260, 953
BccI	CCATC	4 cut(s)	23, 71, 623, 1114
BcgI	CGANNNNNNTGC	2 cut(s)	628, 662
BciT130I	CCWGG	3 cut(s)	130, 408, 768
BcoDI	GTCTC	3 cut(s)	532, 855, 985
BfmI	CTRYAG	2 cut(s)	720, 999
BisI	GCNGC	4 cut(s)	249, 468, 898, 942
BlsI	GCNGC	4 cut(s)	250, 469, 899, 943
Bme1390I	CCNGG	3 cut(s)	130, 408, 768
Bme18I	GGWCC	1 cut(s)	1142
BmgT120I	GGNCC	1 cut(s)	1142
BmiI	GGNNCC	2 cut(s)	127, 954
BmrFI	CCNGG	3 cut(s)	130, 408, 768
BmrI	ACTGGG	1 cut(s)	1073
BmsI	GCATC	4 cut(s)	307, 407, 818, 862
BmuI	ACTGGG	1 cut(s)	1073
BpiI	GAAGAC	1 cut(s)	849
BpmI	CTGGAG	1 cut(s)	151
BsaJI	CCNNGG	4 cut(s)	406, 708, 986, 1055
BsaXI	ACNNNNNCTCC	2 cut(s)	1010, 1040
Bsc4I	CCNNNNNNNGG	5 cut(s)	78, 299, 904, 970, 1015
Bse1I	ACTGG	5 cut(s)	511, 547, 605, 1079, 1144
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	3 cut(s)	130, 408, 768
BseDI	CCNNGG	4 cut(s)	406, 708, 986, 1055
BseGI	GGATG	3 cut(s)	195, 381, 530
BseLI	CCNNNNNNNGG	5 cut(s)	78, 299, 904, 970, 1015
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	1032
BseNI	ACTGG	5 cut(s)	511, 547, 605, 1079, 1144
BseRI	GAGGAG	1 cut(s)	1031
BseXI	GCAGC	2 cut(s)	260, 953
BsiHKAI	GWGCWC	1 cut(s)	197
BslFI	GGGAC	3 cut(s)	94, 169, 517
BslI	CCNNNNNNNGG	5 cut(s)	78, 299, 904, 970, 1015
BsmAI	GTCTC	3 cut(s)	532, 855, 985
BsmFI	GGGAC	3 cut(s)	94, 169, 517
BsmI	GAATGC	2 cut(s)	167, 179
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	2 cut(s)	907, 1107
Bsp19I	CCATGG	2 cut(s)	708, 986
BspACI	CCGC	3 cut(s)	467, 779, 898
BspCNI	CTCAG	1 cut(s)	1033
BspLI	GGNNCC	2 cut(s)	127, 954
BspPI	GGATC	2 cut(s)	915, 1115
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	5 cut(s)	511, 547, 605, 1079, 1144
BssECI	CCNNGG	4 cut(s)	406, 708, 986, 1055
BssMI	GATC	2 cut(s)	907, 1107
BssNAI	GTATAC	2 cut(s)	21, 67
BssT1I	CCWWGG	3 cut(s)	708, 986, 1055
Bst1107I	GTATAC	2 cut(s)	21, 67
Bst2UI	CCWGG	3 cut(s)	130, 408, 768
Bst4CI	ACNGT	4 cut(s)	85, 455, 1003, 1103
BstC8I	GCNNGC	4 cut(s)	139, 472, 779, 902
BstDEI	CTNAG	4 cut(s)	151, 252, 1041, 1125
BstDSI	CCRYGG	2 cut(s)	708, 986
BstF5I	GGATG	3 cut(s)	195, 381, 530
BstKTI	GATC	2 cut(s)	910, 1110
BstMAI	GTCTC	3 cut(s)	532, 855, 985
BstMBI	GATC	2 cut(s)	907, 1107
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 311, 635
BstNI	CCWGG	3 cut(s)	130, 408, 768
BstNSI	RCATGY	2 cut(s)	282, 474
BstSCI	CCNGG	3 cut(s)	128, 406, 766
BstSFI	CTRYAG	2 cut(s)	720, 999
BstV1I	GCAGC	2 cut(s)	260, 953
BstV2I	GAAGAC	1 cut(s)	849
BstX2I	RGATCY	1 cut(s)	1107
BstYI	RGATCY	1 cut(s)	1107
BstZ17I	GTATAC	2 cut(s)	21, 67
BtgI	CCRYGG	2 cut(s)	708, 986
BtsCI	GGATG	3 cut(s)	195, 381, 530
BtsI	GCAGTG	1 cut(s)	244
BtsIMutI	CAGTG	4 cut(s)	90, 244, 460, 1086
Cac8I	GCNNGC	4 cut(s)	139, 472, 779, 902
CaiI	CAGNNNCTG	2 cut(s)	802, 881
Cfr13I	GGNCC	1 cut(s)	1142
Csp6I	GTAC	3 cut(s)	741, 836, 1085
CviAII	CATG	6 cut(s)	279, 412, 471, 681, 709, 987
CviQI	GTAC	3 cut(s)	741, 836, 1085
DdeI	CTNAG	4 cut(s)	151, 252, 1041, 1125
DpnI	GATC	2 cut(s)	909, 1109
DpnII	GATC	2 cut(s)	907, 1107
Ecl136II	GAGCTC	1 cut(s)	195
Eco130I	CCWWGG	3 cut(s)	708, 986, 1055
Eco24I	GRGCYC	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	1142
Eco53kI	GAGCTC	1 cut(s)	195
Eco57I	CTGAAG	2 cut(s)	248, 861
EcoICRI	GAGCTC	1 cut(s)	195
EcoRII	CCWGG	3 cut(s)	128, 406, 766
EcoT14I	CCWWGG	3 cut(s)	708, 986, 1055
EcoT38I	GRGCYC	1 cut(s)	197
ErhI	CCWWGG	3 cut(s)	708, 986, 1055
FaeI	CATG	6 cut(s)	282, 415, 474, 684, 712, 990
FaqI	GGGAC	3 cut(s)	94, 169, 517
FatI	CATG	6 cut(s)	278, 411, 470, 680, 708, 986
FauI	CCCGC	1 cut(s)	786
FblI	GTMKAC	2 cut(s)	20, 66
Fnu4HI	GCNGC	4 cut(s)	249, 468, 898, 942
FokI	GGATG	3 cut(s)	202, 388, 517
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	4 cut(s)	249, 468, 898, 942
GluI	GCNGC	4 cut(s)	249, 468, 898, 942
GsuI	CTGGAG	1 cut(s)	151
Hin1II	CATG	6 cut(s)	282, 415, 474, 684, 712, 990
HinfI	GANTC	4 cut(s)	757, 878, 927, 974
Hpy166II	GTNNAC	4 cut(s)	21, 67, 458, 1087
Hpy188I	TCNGA	2 cut(s)	228, 762
Hpy8I	GTNNAC	4 cut(s)	21, 67, 458, 1087
HpyAV	CCTTC	2 cut(s)	665, 1123
HpyCH4III	ACNGT	4 cut(s)	85, 455, 1003, 1103
HpyCH4V	TGCA	3 cut(s)	50, 449, 875
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 311, 635
HpyF3I	CTNAG	4 cut(s)	151, 252, 1041, 1125
Hsp92II	CATG	6 cut(s)	282, 415, 474, 684, 712, 990
Kzo9I	GATC	2 cut(s)	907, 1107
LmnI	GCTCC	4 cut(s)	302, 539, 1018, 1059
Lsp1109I	GCAGC	2 cut(s)	260, 953
LweI	GCATC	4 cut(s)	307, 407, 818, 862
MaeIII	GTNAC	2 cut(s)	118, 1003
MalI	GATC	2 cut(s)	909, 1109
MboI	GATC	2 cut(s)	907, 1107
MboII	GAAGA	6 cut(s)	20, 65, 342, 586, 586, 854
MfeI	CAATTG	1 cut(s)	714
MflI	RGATCY	1 cut(s)	1107
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	7 cut(s)	265, 513, 714, 792, 920, 1029, 1180
MlyI	GAGTC	2 cut(s)	887, 968
MnlI	CCTC	6 cut(s)	27, 358, 559, 764, 943, 1009
MseI	TTAA	1 cut(s)	516
MslI	CAYNNNNRTG	2 cut(s)	374, 915
MspA1I	CMGCKG	2 cut(s)	781, 944
MspR9I	CCNGG	3 cut(s)	130, 408, 768
MunI	CAATTG	1 cut(s)	714
Mva1269I	GAATGC	2 cut(s)	167, 179
MvaI	CCWGG	3 cut(s)	130, 408, 768
MwoI	GCNNNNNNNGC	3 cut(s)	248, 311, 635
NcoI	CCATGG	2 cut(s)	708, 986
NdeII	GATC	2 cut(s)	907, 1107
NlaIII	CATG	6 cut(s)	282, 415, 474, 684, 712, 990
NlaIV	GGNNCC	2 cut(s)	127, 954
NmuCI	GTSAC	1 cut(s)	118
NspI	RCATGY	2 cut(s)	282, 474
PaeI	GCATGC	1 cut(s)	474
PciI	ACATGT	1 cut(s)	278
PctI	GAATGC	2 cut(s)	167, 179
PfeI	GAWTC	2 cut(s)	757, 927
PflFI	GACNNNGTC	1 cut(s)	391
PkrI	GCNGC	4 cut(s)	250, 469, 899, 943
PleI	GAGTC	2 cut(s)	886, 968
PpsI	GAGTC	2 cut(s)	886, 968
PscI	ACATGT	1 cut(s)	278
PsiI	TTATAA	1 cut(s)	1034
Psp124BI	GAGCTC	1 cut(s)	197
Psp6I	CCWGG	3 cut(s)	128, 406, 766
PspGI	CCWGG	3 cut(s)	128, 406, 766
PspN4I	GGNNCC	2 cut(s)	127, 954
PspPI	GGNCC	1 cut(s)	1142
PstNI	CAGNNNCTG	2 cut(s)	802, 881
PsuI	RGATCY	1 cut(s)	1107
PsyI	GACNNNGTC	1 cut(s)	391
PvuII	CAGCTG	1 cut(s)	944
RsaI	GTAC	3 cut(s)	742, 837, 1086
RsaNI	GTAC	3 cut(s)	741, 836, 1085
RseI	CAYNNNNRTG	2 cut(s)	374, 915
SacI	GAGCTC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	4 cut(s)	249, 468, 898, 942
Sau3AI	GATC	2 cut(s)	907, 1107
Sau96I	GGNCC	1 cut(s)	1142
SchI	GAGTC	2 cut(s)	887, 968
ScrFI	CCNGG	3 cut(s)	130, 408, 768
SduI	GDGCHC	1 cut(s)	197
SfaNI	GCATC	4 cut(s)	307, 407, 818, 862
SfcI	CTRYAG	2 cut(s)	720, 999
SinI	GGWCC	1 cut(s)	1142
SmiMI	CAYNNNNRTG	2 cut(s)	374, 915
SphI	GCATGC	1 cut(s)	474
Sse9I	AATT	7 cut(s)	265, 513, 714, 792, 920, 1029, 1180
SsiI	CCGC	3 cut(s)	467, 779, 898
SstI	GAGCTC	1 cut(s)	197
StyD4I	CCNGG	3 cut(s)	128, 406, 766
StyI	CCWWGG	3 cut(s)	708, 986, 1055
TaaI	ACNGT	4 cut(s)	85, 455, 1003, 1103
TaqI	TCGA	1 cut(s)	977
TasI	AATT	7 cut(s)	265, 513, 714, 792, 920, 1029, 1180
TauI	GCSGC	2 cut(s)	470, 900
TfiI	GAWTC	2 cut(s)	757, 927
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TscAI	CASTG	4 cut(s)	90, 244, 460, 1086
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	2 cut(s)	248, 941
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	5 cut(s)	428, 466, 680, 876, 933
TspGWI	ACGGA	1 cut(s)	1104
TspRI	CASTG	4 cut(s)	90, 244, 460, 1086
Tth111I	GACNNNGTC	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	1142
XapI	RAATTY	1 cut(s)	920
XceI	RCATGY	2 cut(s)	282, 474
XmiI	GTMKAC	2 cut(s)	20, 66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.