Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0022403

Physical Location & Seq

Genomic Coordinates Reverse (-)

24552640 .. 24554834

Gene Structure 2195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1157300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGCATTCGGCAGTCTCAAATTTGTTCAGGATGCTATGGATCTTATCATTGGCTGCTATACAGTCAGAAGGGACACTTCAACATTCCGGGCTGAATCTTTTTCTTTTCTACCGGTGGCATCAGCTTTGCTAATTGGAGGGTTGACACTGACATCTGTCACACTTCAGCAAGCTGGTCGAAATGCCCAGCAATATATGTCTTCTGTCCTTTTGGCTCGTGTGACTGCTGGAGTAGCGGCAGTGGTGAAAGTTAACGGAAGGCAATTCTGTTCGAGACCTCGCTTGTGCAGAGTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0031984 GO:0034596 GO:0042175 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043812 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052744 GO:0052866 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Syja_N

Protein Analysis

100

Amino Acids

10.7

Weight (kDa)

10.41

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022403)

Species	Orthologous Gene IDs
malus_domestica	MD04G1157300.v1.1 MD12G1169200.v1.1 MD12G1171000.v1.1
pyrus_communis	pycom12g11000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	236
AclWI	GGATC	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	20
AcuI	CTGAAG	1 cut(s)	149
AgeI	ACCGGT	1 cut(s)	112
AgsI	TTSAA	1 cut(s)	81
AluBI	AGCT	2 cut(s)	125, 173
AluI	AGCT	2 cut(s)	125, 173
Alw26I	GTCTC	2 cut(s)	20, 268
AlwI	GGATC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	54
ApoI	RAATTY	1 cut(s)	20
AsiGI	ACCGGT	1 cut(s)	112
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	256
BauI	CACGAG	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	41
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BcnI	CCSGG	1 cut(s)	89
BcoDI	GTCTC	2 cut(s)	20, 268
BisI	GCNGC	2 cut(s)	55, 237
BlsI	GCNGC	2 cut(s)	56, 238
Bme1390I	CCNGG	1 cut(s)	89
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	2 cut(s)	22, 128
BoxI	GACNNNNGTC	1 cut(s)	155
BpiI	GAAGAC	1 cut(s)	192
BpmI	CTGGAG	1 cut(s)	249
BpuMI	CCSGG	1 cut(s)	89
BsaI	GGTCTC	1 cut(s)	268
BsaWI	WCCGGW	1 cut(s)	112
Bse118I	RCCGGY	1 cut(s)	112
BseGI	GGATG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	41
BseYI	CCCAGC	1 cut(s)	186
BshTI	ACCGGT	1 cut(s)	112
BsiSI	CCGG	2 cut(s)	88, 113
BslFI	GGGAC	1 cut(s)	86
BsmAI	GTCTC	2 cut(s)	20, 268
BsmFI	GGGAC	1 cut(s)	86
BsmI	GAATGC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	268
Bsp143I	GATC	1 cut(s)	40
BspACI	CCGC	1 cut(s)	236
BspPI	GGATC	1 cut(s)	48
BspTNI	GGTCTC	1 cut(s)	268
BsrFI	RCCGGY	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	112
BssMI	GATC	1 cut(s)	40
BssSI	CACGAG	1 cut(s)	216
Bst2BI	CACGAG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	1 cut(s)	43
BstMAI	GTCTC	2 cut(s)	20, 268
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstPAI	GACNNNNGTC	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	41
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	37
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	2 cut(s)	146, 246
Cac8I	GCNNGC	1 cut(s)	171
Cfr10I	RCCGGY	1 cut(s)	112
CspAI	ACCGGT	1 cut(s)	112
CviJI	RGCY	5 cut(s)	54, 92, 125, 173, 215
CviKI_1	RGCY	5 cut(s)	54, 92, 125, 173, 215
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
Eco31I	GGTCTC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	149
FaiI	YATR	4 cut(s)	38, 60, 195, 197
FalI	AAGNNNNNCTT	2 cut(s)	61, 93
FaqI	GGGAC	1 cut(s)	86
Fnu4HI	GCNGC	2 cut(s)	55, 237
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	2 cut(s)	55, 237
GluI	GCNGC	2 cut(s)	55, 237
GsaI	CCCAGC	1 cut(s)	190
GsuI	CTGGAG	1 cut(s)	249
HapII	CCGG	2 cut(s)	88, 113
HincII	GTYRAC	2 cut(s)	144, 253
HindII	GTYRAC	2 cut(s)	144, 253
HinfI	GANTC	1 cut(s)	95
HpaI	GTTAAC	1 cut(s)	253
HpaII	CCGG	2 cut(s)	88, 113
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	2 cut(s)	144, 253
Hpy188I	TCNGA	1 cut(s)	68
Hpy188III	TCNNGA	2 cut(s)	29, 273
Hpy8I	GTNNAC	2 cut(s)	144, 253
HpyAV	CCTTC	2 cut(s)	63, 252
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4V	TGCA	1 cut(s)	288
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
KspAI	GTTAAC	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	40
LpnPI	CCDG	6 cut(s)	14, 101, 126, 159, 200, 213
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	2 cut(s)	22, 128
MaeIII	GTNAC	2 cut(s)	157, 220
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	1 cut(s)	192
MflI	RGATCY	1 cut(s)	40
MluCI	AATT	3 cut(s)	20, 132, 263
MnlI	CCTC	2 cut(s)	131, 288
MseI	TTAA	1 cut(s)	252
MspI	CCGG	2 cut(s)	88, 113
MspR9I	CCNGG	1 cut(s)	89
Mva1269I	GAATGC	1 cut(s)	5
MwoI	GCNNNNNNNGC	1 cut(s)	233
NciI	CCSGG	1 cut(s)	89
NdeII	GATC	1 cut(s)	40
NmuCI	GTSAC	2 cut(s)	157, 220
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	1 cut(s)	95
PinAI	ACCGGT	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	56, 238
PshAI	GACNNNNGTC	1 cut(s)	155
PspFI	CCCAGC	1 cut(s)	186
PsuI	RGATCY	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	2 cut(s)	55, 237
Sau3AI	GATC	1 cut(s)	40
ScrFI	CCNGG	1 cut(s)	89
SetI	ASST	3 cut(s)	127, 175, 280
SfaNI	GCATC	2 cut(s)	22, 128
Sse9I	AATT	3 cut(s)	20, 132, 263
SsiI	CCGC	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	64
TaqI	TCGA	2 cut(s)	178, 272
TasI	AATT	3 cut(s)	20, 132, 263
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	2 cut(s)	153, 246
TseFI	GTSAC	2 cut(s)	157, 220
TseI	GCWGC	1 cut(s)	54
Tsp45I	GTSAC	2 cut(s)	157, 220
TspGWI	ACGGA	1 cut(s)	270
TspRI	CASTG	2 cut(s)	153, 246
XapI	RAATTY	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.