Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0022403

Physical Location & Seq

Genomic Coordinates Reverse (-)

25181784 .. 25183109

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1171000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGAGTGCTCTTTCAAGATATTTTTTTAATAACTTTCAGGACGGCATTCAGCAGGATGCTATGGATCTTATCAGCGGCCGCTATACATATCTACCGGCGGCATCAGCTTTGCTAATCGGAGGGTTGACACTGACATCAGTCACACTTAACAAGTATATGTCTTCTGTTCTTTGTGCTGGAGTGACTGCTGGAGTAGCGGCAGCGGTTAAAGCTCACGGAAGGCAATTCTGTTCGAGACCTCACTTGTGCAGACTCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0031984 GO:0034596 GO:0042175 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043812 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052744 GO:0052866 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Syja_N

Protein Analysis

87

Amino Acids

9.23

Weight (kDa)

9.3

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022403)

Species	Orthologous Gene IDs
malus_domestica	MD04G1157300.v1.1 MD12G1169200.v1.1 MD12G1171000.v1.1
pyrus_communis	pycom12g11000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	75, 79, 98, 197, 203
AclWI	GGATC	1 cut(s)	72
AcoI	YGGCCR	1 cut(s)	76
AgsI	TTSAA	1 cut(s)	15
AluBI	AGCT	2 cut(s)	107, 212
AluI	AGCT	2 cut(s)	107, 212
Alw21I	GWGCWC	1 cut(s)	10
Alw26I	GTCTC	1 cut(s)	229
AlwI	GGATC	1 cut(s)	72
AoxI	GGCC	1 cut(s)	76
ApeKI	GCWGC	1 cut(s)	200
BauI	CACGAG	1 cut(s)	254
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	1 cut(s)	212
BceAI	ACGGC	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	229
BisI	GCNGC	5 cut(s)	76, 79, 99, 198, 201
BlsI	GCNGC	5 cut(s)	77, 80, 100, 199, 202
BmsI	GCATC	2 cut(s)	46, 110
BoxI	GACNNNNGTC	1 cut(s)	137
BpiI	GAAGAC	1 cut(s)	153
BpmI	CTGGAG	2 cut(s)	198, 210
BsaI	GGTCTC	1 cut(s)	229
Bse118I	RCCGGY	1 cut(s)	94
BseGI	GGATG	1 cut(s)	61
BseX3I	CGGCCG	1 cut(s)	76
BseXI	GCAGC	1 cut(s)	212
Bsh1285I	CGRYCG	1 cut(s)	79
BshFI	GGCC	1 cut(s)	78
BsiEI	CGRYCG	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	10
BsiSI	CCGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	229
BsmI	GAATGC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	78
Bso31I	GGTCTC	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	5 cut(s)	75, 79, 98, 197, 203
BspANI	GGCC	1 cut(s)	78
BspPI	GGATC	1 cut(s)	72
BspTNI	GGTCTC	1 cut(s)	229
BsrFI	RCCGGY	1 cut(s)	94
BssAI	RCCGGY	1 cut(s)	94
BssMI	GATC	1 cut(s)	64
BssSI	CACGAG	1 cut(s)	254
Bst2BI	CACGAG	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	64
BstMCI	CGRYCG	1 cut(s)	79
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 194, 209
BstPAI	GACNNNNGTC	1 cut(s)	137
BstV1I	GCAGC	1 cut(s)	212
BstV2I	GAAGAC	1 cut(s)	153
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BstZI	CGGCCG	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	128
CciNI	GCGGCCGC	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	94
CviJI	RGCY	3 cut(s)	78, 107, 212
CviKI_1	RGCY	3 cut(s)	78, 107, 212
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	76
EagI	CGGCCG	1 cut(s)	76
EclXI	CGGCCG	1 cut(s)	76
Eco31I	GGTCTC	1 cut(s)	229
Eco52I	CGGCCG	1 cut(s)	76
FaiI	YATR	5 cut(s)	62, 84, 88, 156, 158
Fnu4HI	GCNGC	5 cut(s)	76, 79, 99, 198, 201
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	5 cut(s)	76, 79, 99, 198, 201
GluI	GCNGC	5 cut(s)	76, 79, 99, 198, 201
GsuI	CTGGAG	2 cut(s)	198, 210
HaeIII	GGCC	1 cut(s)	78
HapII	CCGG	1 cut(s)	95
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HinfI	GANTC	1 cut(s)	252
HpaII	CCGG	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	1 cut(s)	119
Hpy188III	TCNNGA	3 cut(s)	15, 38, 234
Hpy8I	GTNNAC	1 cut(s)	126
HpyAV	CCTTC	1 cut(s)	213
HpyCH4V	TGCA	1 cut(s)	249
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 194, 209
Kzo9I	GATC	1 cut(s)	64
LpnPI	CCDG	5 cut(s)	23, 38, 108, 162, 174
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	2 cut(s)	46, 110
MaeIII	GTNAC	2 cut(s)	139, 181
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	1 cut(s)	153
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	1 cut(s)	224
MlyI	GAGTC	1 cut(s)	246
MnlI	CCTC	2 cut(s)	113, 249
MseI	TTAA	3 cut(s)	27, 147, 207
MspA1I	CMGCKG	2 cut(s)	75, 203
MspI	CCGG	1 cut(s)	95
Mva1269I	GAATGC	1 cut(s)	45
MwoI	GCNNNNNNNGC	3 cut(s)	104, 194, 209
NdeII	GATC	1 cut(s)	64
NmuCI	GTSAC	2 cut(s)	139, 181
NotI	GCGGCCGC	1 cut(s)	76
PctI	GAATGC	1 cut(s)	45
PkrI	GCNGC	5 cut(s)	77, 80, 100, 199, 202
PleI	GAGTC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	246
PshAI	GACNNNNGTC	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	64
SaqAI	TTAA	3 cut(s)	27, 147, 207
SatI	GCNGC	5 cut(s)	76, 79, 99, 198, 201
Sau3AI	GATC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	246
SduI	GDGCHC	1 cut(s)	10
SetI	ASST	3 cut(s)	109, 214, 241
SfaNI	GCATC	2 cut(s)	46, 110
Sse9I	AATT	1 cut(s)	224
SsiI	CCGC	5 cut(s)	75, 79, 98, 197, 203
TaqI	TCGA	1 cut(s)	233
TasI	AATT	1 cut(s)	224
TauI	GCSGC	4 cut(s)	78, 81, 101, 200
Tru1I	TTAA	3 cut(s)	27, 147, 207
Tru9I	TTAA	3 cut(s)	27, 147, 207
TscAI	CASTG	1 cut(s)	135
TseFI	GTSAC	2 cut(s)	139, 181
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	2 cut(s)	139, 181
TspGWI	ACGGA	1 cut(s)	231
TspRI	CASTG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.