Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0022403

Physical Location & Seq

Genomic Coordinates Reverse (-)

25063341 .. 25064422

Gene Structure 1082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1169200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGATCTTATCAGTGGCCGCTATACAGTTAGAAGGGATATTTCACCATCCCGGGCTGAATCTTTTTCTTATCTACCGGTGGCATCAGCTTTGCTAATCGGAAGGTTGACACTGACATCCGTCACACTTCAGCAAGCAGGTCGTAATGCCCAACAGTATATGTCTTCTGTTCTTTGTGCTGGAGTCACTGCTGGAGTAGCGGCAGCGGTTAAAGCAAACGGAAGGCAATTCTGTTCGAGACCTCGCTTGTGCAAGACTCGTTTAACATTATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0031984 GO:0034596 GO:0042175 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043812 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052744 GO:0052866 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Syja_N

Protein Analysis

92

Amino Acids

9.84

Weight (kDa)

10.85

Isoelectric Point (pI)

50.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022403)

Species	Orthologous Gene IDs
malus_domestica	MD04G1157300.v1.1 MD12G1169200.v1.1 MD12G1171000.v1.1
pyrus_communis	pycom12g11000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	128
AciI	CCGC	3 cut(s)	19, 200, 206
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	16
AcuI	CTGAAG	1 cut(s)	113
AgeI	ACCGGT	1 cut(s)	76
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	51
AoxI	GGCC	1 cut(s)	16
ApeKI	GCWGC	1 cut(s)	203
AsiGI	ACCGGT	1 cut(s)	76
AsuC2I	CCSGG	2 cut(s)	52, 53
AsuHPI	GGTGA	1 cut(s)	36
AvaI	CYCGRG	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	215
BccI	CCATC	1 cut(s)	55
BcgI	CGANNNNNNTGC	2 cut(s)	122, 156
BcnI	CCSGG	2 cut(s)	52, 53
BcoDI	GTCTC	1 cut(s)	232
BfuAI	ACCTGC	1 cut(s)	128
BisI	GCNGC	3 cut(s)	19, 201, 204
BlsI	GCNGC	3 cut(s)	20, 202, 205
Bme1390I	CCNGG	2 cut(s)	52, 53
BmeT110I	CYCGRG	1 cut(s)	51
BmrFI	CCNGG	2 cut(s)	52, 53
BmsI	GCATC	1 cut(s)	92
BoxI	GACNNNNGTC	1 cut(s)	119
BpiI	GAAGAC	1 cut(s)	156
BpmI	CTGGAG	2 cut(s)	201, 213
BpuMI	CCSGG	2 cut(s)	52, 53
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	76
Bse118I	RCCGGY	1 cut(s)	76
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	2 cut(s)	47, 116
BseXI	GCAGC	1 cut(s)	215
BshFI	GGCC	1 cut(s)	18
BshTI	ACCGGT	1 cut(s)	76
BsiHKCI	CYCGRG	1 cut(s)	51
BsiSI	CCGG	2 cut(s)	52, 77
BsmAI	GTCTC	1 cut(s)	232
BsnI	GGCC	1 cut(s)	18
Bso31I	GGTCTC	1 cut(s)	232
BsoBI	CYCGRG	1 cut(s)	51
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	3 cut(s)	19, 200, 206
BspANI	GGCC	1 cut(s)	18
BspMI	ACCTGC	1 cut(s)	128
BspPI	GGATC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	232
BsrFI	RCCGGY	1 cut(s)	76
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	1 cut(s)	4
Bst4CI	ACNGT	2 cut(s)	28, 156
BstC8I	GCNNGC	1 cut(s)	135
BstF5I	GGATG	2 cut(s)	47, 116
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 212
BstPAI	GACNNNNGTC	1 cut(s)	119
BstSCI	CCNGG	2 cut(s)	50, 51
BstV1I	GCAGC	1 cut(s)	215
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	18
BtsCI	GGATG	2 cut(s)	47, 116
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	3 cut(s)	19, 110, 186
BveI	ACCTGC	1 cut(s)	128
Cac8I	GCNNGC	1 cut(s)	135
Cfr10I	RCCGGY	1 cut(s)	76
Cfr9I	CCCGGG	1 cut(s)	51
CspAI	ACCGGT	1 cut(s)	76
CviJI	RGCY	3 cut(s)	18, 56, 89
CviKI_1	RGCY	3 cut(s)	18, 56, 89
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
EaeI	YGGCCR	1 cut(s)	16
Eco31I	GGTCTC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	113
Eco88I	CYCGRG	1 cut(s)	51
FaiI	YATR	3 cut(s)	24, 159, 161
Fnu4HI	GCNGC	3 cut(s)	19, 201, 204
FokI	GGATG	2 cut(s)	34, 103
Fsp4HI	GCNGC	3 cut(s)	19, 201, 204
GluI	GCNGC	3 cut(s)	19, 201, 204
GsuI	CTGGAG	2 cut(s)	201, 213
HaeIII	GGCC	1 cut(s)	18
HapII	CCGG	2 cut(s)	52, 77
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HinfI	GANTC	3 cut(s)	59, 183, 256
HpaII	CCGG	2 cut(s)	52, 77
HphI	GGTGA	1 cut(s)	36
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188I	TCNGA	2 cut(s)	101, 275
Hpy188III	TCNNGA	1 cut(s)	237
Hpy8I	GTNNAC	1 cut(s)	108
HpyAV	CCTTC	3 cut(s)	27, 96, 216
HpyCH4III	ACNGT	2 cut(s)	28, 156
HpyCH4V	TGCA	1 cut(s)	252
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 212
Kzo9I	GATC	1 cut(s)	4
LpnPI	CCDG	5 cut(s)	65, 90, 123, 165, 177
Lsp1109I	GCAGC	1 cut(s)	215
LweI	GCATC	1 cut(s)	92
MaeIII	GTNAC	2 cut(s)	121, 184
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	1 cut(s)	156
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	1 cut(s)	227
MlyI	GAGTC	2 cut(s)	192, 250
MnlI	CCTC	1 cut(s)	252
MseI	TTAA	2 cut(s)	210, 263
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	2 cut(s)	52, 77
MspR9I	CCNGG	2 cut(s)	52, 53
MwoI	GCNNNNNNNGC	2 cut(s)	197, 212
NciI	CCSGG	2 cut(s)	52, 53
NdeII	GATC	1 cut(s)	4
NmuCI	GTSAC	2 cut(s)	121, 184
PfeI	GAWTC	1 cut(s)	59
PinAI	ACCGGT	1 cut(s)	76
PkrI	GCNGC	3 cut(s)	20, 202, 205
PleI	GAGTC	2 cut(s)	191, 250
PpsI	GAGTC	2 cut(s)	191, 250
PshAI	GACNNNNGTC	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	210, 263
SatI	GCNGC	3 cut(s)	19, 201, 204
Sau3AI	GATC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	192, 250
ScrFI	CCNGG	2 cut(s)	52, 53
SetI	ASST	4 cut(s)	91, 107, 142, 244
SfaNI	GCATC	1 cut(s)	92
SmaI	CCCGGG	1 cut(s)	53
Sse9I	AATT	1 cut(s)	227
SsiI	CCGC	3 cut(s)	19, 200, 206
StyD4I	CCNGG	2 cut(s)	50, 51
TaaI	ACNGT	2 cut(s)	28, 156
TaqI	TCGA	1 cut(s)	236
TasI	AATT	1 cut(s)	227
TauI	GCSGC	2 cut(s)	21, 203
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	2 cut(s)	210, 263
Tru9I	TTAA	2 cut(s)	210, 263
TscAI	CASTG	3 cut(s)	19, 117, 193
TseFI	GTSAC	2 cut(s)	121, 184
TseI	GCWGC	1 cut(s)	203
Tsp45I	GTSAC	2 cut(s)	121, 184
TspGWI	ACGGA	2 cut(s)	109, 234
TspMI	CCCGGG	1 cut(s)	51
TspRI	CASTG	3 cut(s)	19, 117, 193
XmaI	CCCGGG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.