Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0024407

Physical Location & Seq

Genomic Coordinates Reverse (-)

25760771 .. 25764604

Gene Structure 3834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1167400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGATTGTGATCCCTTATTTAACCGCATTAACCACGTACTTCAGCTATGGATTGCTCTTCATTTTCGGCCAAGTCAGAGATTTCTTCCGCAAAATAATCGACTGGTGGAGTGCTAGCAATTTGCAGGTTCCGCCTATTGCAAGTGCTCCTGATGCTTGGTTTGATGTGGTTGAACGCTACTCCAATGACTACAACAAAACACTCAAGCTAACCAAAAAAACCAGTAGATGCCTTAACTTGGGATCTTACAATTACCTTGGCTTTGCTGCATCTGATGAGTACTGCACACCTCGCGCTGTTGAGACGTTGAAAAAATATTCTCCCAGTACCTGTAGTAGCCGAGTTGATGGCGGCACCACAGATTTGCATAATGAGCTGGAAGAGTGTGTTGCAAATTTTGTTGGGAAACCTGCTGCTATAGTTTTCGGAATGGGTTATGTCACAAACTCTGTTATCCTTCCTATTCTGATGGGGATGGGAGGCTTGATTGTTAGTGATTCTTTGAACCACAACTCCATAGTCAATGGCGCAAGAGGATCTGGAGTTAGAGTTTGTGTTTTCCAACACAATAGTCGATTACCAAAAGGAGCTCATCAAGTATTCTACAAGCACGATCGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002178 GO:0003674 GO:0003824 GO:0004758 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010506 GO:0010508 GO:0012505 GO:0016020 GO:0016239 GO:0016241 GO:0016408 GO:0016409 GO:0016454 GO:0016740 GO:0016746 GO:0016747 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

208

Amino Acids

23.02

Weight (kDa)

8.77

Isoelectric Point (pI)

26.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	77 - 188	5.4e-12	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024407)

Species	Orthologous Gene IDs
malus_domestica	MD04G1167400.v1.1 MD11G1011200.v1.1
pyrus_communis	pycom01g08110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	115, 418
AccB1I	GGYRCC	1 cut(s)	353
AccII	CGCG	1 cut(s)	294
AciI	CCGC	4 cut(s)	24, 88, 131, 351
AclWI	GGATC	3 cut(s)	4, 250, 544
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	1 cut(s)	394
AcuI	CTGAAG	1 cut(s)	25
AfaI	GTAC	3 cut(s)	38, 281, 328
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	3 cut(s)	173, 310, 505
AloI	GAACNNNNNNTCC	2 cut(s)	497, 529
AluBI	AGCT	4 cut(s)	45, 208, 376, 590
AluI	AGCT	4 cut(s)	45, 208, 376, 590
Alw21I	GWGCWC	2 cut(s)	148, 592
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	3 cut(s)	4, 250, 544
AlwNI	CAGNNNCTG	1 cut(s)	330
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	2 cut(s)	266, 413
ApoI	RAATTY	1 cut(s)	394
AspLEI	GCGC	2 cut(s)	296, 530
AsuNHI	GCTAGC	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	353
BanII	GRGCYC	1 cut(s)	592
Bbv12I	GWGCWC	2 cut(s)	148, 592
BbvI	GCAGC	2 cut(s)	253, 400
BccI	CCATC	3 cut(s)	341, 463, 469
BcgI	CGANNNNNNTGC	2 cut(s)	79, 113
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	2 cut(s)	331, 417
BfuAI	ACCTGC	2 cut(s)	115, 418
BisI	GCNGC	3 cut(s)	267, 352, 414
BlsI	GCNGC	3 cut(s)	268, 353, 415
BmcAI	AGTACT	1 cut(s)	281
BmiI	GGNNCC	2 cut(s)	129, 355
BmrI	ACTGGG	1 cut(s)	318
BmsI	GCATC	3 cut(s)	142, 218, 278
BmtI	GCTAGC	1 cut(s)	117
BmuI	ACTGGG	1 cut(s)	318
BpmI	CTGGAG	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	188
BsaAI	YACGTR	1 cut(s)	36
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	256
BsaXI	ACNNNNNCTCC	4 cut(s)	497, 527, 534, 564
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse1I	ACTGG	3 cut(s)	107, 222, 324
Bse8I	GATNNNNATC	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	1 cut(s)	480
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseNI	ACTGG	3 cut(s)	107, 222, 324
BseXI	GCAGC	2 cut(s)	253, 400
BsgI	GTGCAG	1 cut(s)	268
Bsh1236I	CGCG	1 cut(s)	294
Bsh1285I	CGRYCG	1 cut(s)	616
BshFI	GGCC	1 cut(s)	69
BshNI	GGYRCC	1 cut(s)	353
BsiEI	CGRYCG	1 cut(s)	616
BsiHKAI	GWGCWC	2 cut(s)	148, 592
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	296
BsmBI	CGTCTC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	69
Bsp1286I	GDGCHC	2 cut(s)	148, 592
Bsp143I	GATC	4 cut(s)	9, 242, 536, 613
BspACI	CCGC	4 cut(s)	24, 88, 131, 351
BspANI	GGCC	1 cut(s)	69
BspFNI	CGCG	1 cut(s)	294
BspLI	GGNNCC	2 cut(s)	129, 355
BspMI	ACCTGC	2 cut(s)	115, 418
BspOI	GCTAGC	1 cut(s)	117
BspPI	GGATC	3 cut(s)	4, 250, 544
BspQI	GCTCTTC	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	353
BsrI	ACTGG	3 cut(s)	107, 222, 324
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	4 cut(s)	9, 242, 536, 613
BssT1I	CCWWGG	1 cut(s)	256
Bst6I	CTCTTC	2 cut(s)	62, 375
BstBAI	YACGTR	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	480
BstFNI	CGCG	1 cut(s)	294
BstHHI	GCGC	2 cut(s)	296, 530
BstKTI	GATC	4 cut(s)	12, 245, 539, 616
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	4 cut(s)	9, 242, 536, 613
BstMCI	CGRYCG	1 cut(s)	616
BstMWI	GCNNNNNNNGC	4 cut(s)	130, 152, 291, 373
BstSFI	CTRYAG	2 cut(s)	331, 417
BstUI	CGCG	1 cut(s)	294
BstV1I	GCAGC	2 cut(s)	253, 400
BstX2I	RGATCY	2 cut(s)	242, 536
BstYI	RGATCY	2 cut(s)	242, 536
BsuRI	GGCC	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	480
BveI	ACCTGC	2 cut(s)	115, 418
Cac8I	GCNNGC	1 cut(s)	115
CaiI	CAGNNNCTG	1 cut(s)	330
CfoI	GCGC	2 cut(s)	296, 530
Csp6I	GTAC	3 cut(s)	37, 280, 327
CviJI	RGCY	8 cut(s)	45, 69, 208, 261, 339, 376, 483, 590
CviKI_1	RGCY	8 cut(s)	45, 69, 208, 261, 339, 376, 483, 590
CviQI	GTAC	3 cut(s)	37, 280, 327
DpnI	GATC	4 cut(s)	11, 244, 538, 615
DpnII	GATC	4 cut(s)	9, 242, 536, 613
EaeI	YGGCCR	1 cut(s)	67
Eam1104I	CTCTTC	2 cut(s)	62, 375
EarI	CTCTTC	2 cut(s)	62, 375
EciI	GGCGGA	1 cut(s)	120
Ecl136II	GAGCTC	1 cut(s)	590
Eco130I	CCWWGG	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	592
Eco53kI	GAGCTC	1 cut(s)	590
Eco57I	CTGAAG	1 cut(s)	25
EcoICRI	GAGCTC	1 cut(s)	590
EcoT14I	CCWWGG	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	592
ErhI	CCWWGG	1 cut(s)	256
Esp3I	CGTCTC	1 cut(s)	296
FaiI	YATR	5 cut(s)	48, 369, 419, 438, 518
Fnu4HI	GCNGC	3 cut(s)	267, 352, 414
FokI	GGATG	1 cut(s)	487
FriOI	GRGCYC	1 cut(s)	592
Fsp4HI	GCNGC	3 cut(s)	267, 352, 414
FspBI	CTAG	1 cut(s)	114
GlaI	GCGC	2 cut(s)	295, 529
GluI	GCNGC	3 cut(s)	267, 352, 414
GsuI	CTGGAG	1 cut(s)	561
HaeIII	GGCC	1 cut(s)	69
HhaI	GCGC	2 cut(s)	296, 530
Hin6I	GCGC	2 cut(s)	294, 528
HinP1I	GCGC	2 cut(s)	294, 528
HinfI	GANTC	1 cut(s)	497
Hpy188I	TCNGA	4 cut(s)	77, 274, 428, 468
Hpy188III	TCNNGA	2 cut(s)	149, 540
HpyAV	CCTTC	1 cut(s)	467
HpyCH4IV	ACGT	2 cut(s)	35, 305
HpyCH4V	TGCA	6 cut(s)	124, 140, 269, 285, 367, 392
HpyF10VI	GCNNNNNNNGC	4 cut(s)	130, 152, 291, 373
HpySE526I	ACGT	2 cut(s)	35, 305
HspAI	GCGC	2 cut(s)	294, 528
Kzo9I	GATC	4 cut(s)	9, 242, 536, 613
LguI	GCTCTTC	1 cut(s)	62
LmnI	GCTCC	2 cut(s)	151, 587
LpnPI	CCDG	9 cut(s)	88, 110, 162, 235, 337, 343, 362, 423, 525
Lsp1109I	GCAGC	2 cut(s)	253, 400
LweI	GCATC	3 cut(s)	142, 218, 278
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	2 cut(s)	35, 305
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	4 cut(s)	11, 244, 538, 615
MboI	GATC	4 cut(s)	9, 242, 536, 613
MboII	GAAGA	3 cut(s)	49, 76, 392
MflI	RGATCY	2 cut(s)	242, 536
MhlI	GDGCHC	2 cut(s)	148, 592
MluCI	AATT	3 cut(s)	118, 250, 394
MmeI	TCCRAC	1 cut(s)	586
MnlI	CCTC	3 cut(s)	300, 473, 527
MseI	TTAA	3 cut(s)	20, 29, 234
MvnI	CGCG	1 cut(s)	294
MwoI	GCNNNNNNNGC	4 cut(s)	130, 152, 291, 373
NdeII	GATC	4 cut(s)	9, 242, 536, 613
NheI	GCTAGC	1 cut(s)	113
NlaIV	GGNNCC	2 cut(s)	129, 355
NmeAIII	GCCGAG	1 cut(s)	365
NmuCI	GTSAC	1 cut(s)	439
PciSI	GCTCTTC	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	497
PkrI	GCNGC	3 cut(s)	268, 353, 415
Ple19I	CGATCG	1 cut(s)	616
Ppu21I	YACGTR	1 cut(s)	36
Psp124BI	GAGCTC	1 cut(s)	592
PspN4I	GGNNCC	2 cut(s)	129, 355
PstNI	CAGNNNCTG	1 cut(s)	330
PsuI	RGATCY	2 cut(s)	242, 536
PvuI	CGATCG	1 cut(s)	616
RsaI	GTAC	3 cut(s)	38, 281, 328
RsaNI	GTAC	3 cut(s)	37, 280, 327
SacI	GAGCTC	1 cut(s)	592
SapI	GCTCTTC	1 cut(s)	62
SaqAI	TTAA	3 cut(s)	20, 29, 234
SatI	GCNGC	3 cut(s)	267, 352, 414
Sau3AI	GATC	4 cut(s)	9, 242, 536, 613
ScaI	AGTACT	1 cut(s)	281
SduI	GDGCHC	2 cut(s)	148, 592
SfaNI	GCATC	3 cut(s)	142, 218, 278
SfcI	CTRYAG	2 cut(s)	331, 417
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	3 cut(s)	118, 250, 394
SsiI	CCGC	4 cut(s)	24, 88, 131, 351
SspI	AATATT	1 cut(s)	317
SspMI	CTAG	1 cut(s)	114
SstI	GAGCTC	1 cut(s)	592
StyI	CCWWGG	1 cut(s)	256
TaiI	ACGT	2 cut(s)	38, 308
TaqI	TCGA	3 cut(s)	99, 574, 616
TasI	AATT	3 cut(s)	118, 250, 394
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	1 cut(s)	354
TfiI	GAWTC	1 cut(s)	497
Tru1I	TTAA	3 cut(s)	20, 29, 234
Tru9I	TTAA	3 cut(s)	20, 29, 234
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	2 cut(s)	266, 413
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	1 cut(s)	49
XapI	RAATTY	1 cut(s)	394
XspI	CTAG	1 cut(s)	114
ZrmI	AGTACT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.