Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0024407

Physical Location & Seq

Genomic Coordinates Reverse (-)

835240 .. 838389

Gene Structure 3150 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1011200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCATGCTAACAAAAAAAAAACCAGTGGATGCCTTAACTTGGGATCTTACAATTACCTTGGCTTTGCTGCATCTGATGAGTACTGCACACCTCACGCTATTGAGACGTTGAAAAAATATTCTCCCAGTACCTGTAGTAGCCGAGTTAATGGCGGCACCATGGATTTGCATAATGAGCTGGAAGAGTGTGTTGCAAATTTTGTTGGGAAACCTGCTGCTATAGTTTTCGGAATGGGTTATGTCACAAACTCTGTTATCCTTCCTATTCTGATGGGGAAGGGAGACTTGATTGTTAGTGATTCTTTGAACCATAACTCCATTGTCAATGGCGCAAGAGGATCTGGAACTAGAGTTTGTGTTTTCCAACACAATAGTGGATTACCAAAAGGAGCTCATCAAGTATTCTGCGAGCAAGATCGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002178 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010506 GO:0010508 GO:0012505 GO:0016020 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

142

Amino Acids

15.11

Weight (kDa)

7.65

Isoelectric Point (pI)

36.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	11 - 122	1.7e-14	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0024407)

Species	Orthologous Gene IDs
malus_domestica	MD04G1167400.v1.1 MD11G1011200.v1.1
pyrus_communis	pycom01g08110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	220
AccB1I	GGYRCC	1 cut(s)	155
AciI	CCGC	1 cut(s)	153
AclWI	GGATC	2 cut(s)	52, 346
AcsI	RAATTY	1 cut(s)	196
AfaI	GTAC	2 cut(s)	83, 130
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	2 cut(s)	112, 307
AleI	CACNNNNGTG	1 cut(s)	372
AloI	GAACNNNNNNTCC	2 cut(s)	299, 331
AluBI	AGCT	2 cut(s)	178, 392
AluI	AGCT	2 cut(s)	178, 392
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	2 cut(s)	98, 276
AlwI	GGATC	2 cut(s)	52, 346
AlwNI	CAGNNNCTG	1 cut(s)	132
ApeKI	GCWGC	2 cut(s)	68, 215
ApoI	RAATTY	1 cut(s)	196
AspLEI	GCGC	1 cut(s)	332
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	394
Bbv12I	GWGCWC	1 cut(s)	394
BbvI	GCAGC	2 cut(s)	55, 202
BccI	CCATC	1 cut(s)	265
BcoDI	GTCTC	2 cut(s)	98, 276
BfaI	CTAG	1 cut(s)	348
BfmI	CTRYAG	2 cut(s)	133, 219
BfuAI	ACCTGC	1 cut(s)	220
BisI	GCNGC	3 cut(s)	69, 154, 216
BlsI	GCNGC	3 cut(s)	70, 155, 217
BmcAI	AGTACT	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	157
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	2 cut(s)	20, 80
BmuI	ACTGGG	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	58, 159
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	2 cut(s)	24, 126
BseDI	CCNNGG	2 cut(s)	58, 159
BseGI	GGATG	1 cut(s)	35
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseNI	ACTGG	2 cut(s)	24, 126
BseXI	GCAGC	2 cut(s)	55, 202
BsgI	GTGCAG	1 cut(s)	70
BshNI	GGYRCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	394
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	2 cut(s)	98, 276
BsmBI	CGTCTC	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp143I	GATC	3 cut(s)	44, 338, 415
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	157
BspMI	ACCTGC	1 cut(s)	220
BspPI	GGATC	2 cut(s)	52, 346
BspT107I	GGYRCC	1 cut(s)	155
BsrI	ACTGG	2 cut(s)	24, 126
BssECI	CCNNGG	2 cut(s)	58, 159
BssMI	GATC	3 cut(s)	44, 338, 415
BssT1I	CCWWGG	2 cut(s)	58, 159
Bst6I	CTCTTC	1 cut(s)	177
BstC8I	GCNNGC	2 cut(s)	6, 410
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	3 cut(s)	47, 341, 418
BstMAI	GTCTC	2 cut(s)	98, 276
BstMBI	GATC	3 cut(s)	44, 338, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstNSI	RCATGY	1 cut(s)	8
BstSFI	CTRYAG	2 cut(s)	133, 219
BstV1I	GCAGC	2 cut(s)	55, 202
BstX2I	RGATCY	2 cut(s)	44, 338
BstYI	RGATCY	2 cut(s)	44, 338
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	31
BveI	ACCTGC	1 cut(s)	220
Cac8I	GCNNGC	2 cut(s)	6, 410
CaiI	CAGNNNCTG	1 cut(s)	132
CfoI	GCGC	1 cut(s)	332
Csp6I	GTAC	2 cut(s)	82, 129
CviAII	CATG	2 cut(s)	5, 160
CviJI	RGCY	4 cut(s)	63, 141, 178, 392
CviKI_1	RGCY	4 cut(s)	63, 141, 178, 392
CviQI	GTAC	2 cut(s)	82, 129
DpnI	GATC	3 cut(s)	46, 340, 417
DpnII	GATC	3 cut(s)	44, 338, 415
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Ecl136II	GAGCTC	1 cut(s)	392
Eco130I	CCWWGG	2 cut(s)	58, 159
Eco24I	GRGCYC	1 cut(s)	394
Eco53kI	GAGCTC	1 cut(s)	392
EcoICRI	GAGCTC	1 cut(s)	392
EcoT14I	CCWWGG	2 cut(s)	58, 159
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	394
ErhI	CCWWGG	2 cut(s)	58, 159
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	2 cut(s)	8, 163
FaiI	YATR	6 cut(s)	6, 161, 171, 221, 240, 312
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FatI	CATG	2 cut(s)	4, 159
Fnu4HI	GCNGC	3 cut(s)	69, 154, 216
FokI	GGATG	1 cut(s)	42
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	3 cut(s)	69, 154, 216
FspBI	CTAG	1 cut(s)	348
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	3 cut(s)	69, 154, 216
HhaI	GCGC	1 cut(s)	332
Hin1II	CATG	2 cut(s)	8, 163
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HinfI	GANTC	1 cut(s)	299
Hpy188I	TCNGA	3 cut(s)	76, 230, 270
Hpy188III	TCNNGA	1 cut(s)	342
HpyAV	CCTTC	2 cut(s)	269, 271
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	5 cut(s)	4, 71, 87, 169, 194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpySE526I	ACGT	1 cut(s)	107
Hsp92II	CATG	2 cut(s)	8, 163
HspAI	GCGC	1 cut(s)	330
Kzo9I	GATC	3 cut(s)	44, 338, 415
LmnI	GCTCC	1 cut(s)	389
LpnPI	CCDG	6 cut(s)	37, 139, 145, 164, 225, 327
Lsp1109I	GCAGC	2 cut(s)	55, 202
LweI	GCATC	2 cut(s)	20, 80
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	1 cut(s)	107
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	3 cut(s)	46, 340, 417
MboI	GATC	3 cut(s)	44, 338, 415
MboII	GAAGA	1 cut(s)	194
MflI	RGATCY	2 cut(s)	44, 338
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	2 cut(s)	52, 196
MmeI	TCCRAC	1 cut(s)	388
MnlI	CCTC	2 cut(s)	102, 329
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	36, 147
MslI	CAYNNNNRTG	1 cut(s)	372
MwoI	GCNNNNNNNGC	1 cut(s)	175
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	3 cut(s)	44, 338, 415
NlaIII	CATG	2 cut(s)	8, 163
NlaIV	GGNNCC	1 cut(s)	157
NmeAIII	GCCGAG	1 cut(s)	167
NmuCI	GTSAC	1 cut(s)	241
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
OliI	CACNNNNGTG	1 cut(s)	372
PaeI	GCATGC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	299
PkrI	GCNGC	3 cut(s)	70, 155, 217
Psp124BI	GAGCTC	1 cut(s)	394
PspN4I	GGNNCC	1 cut(s)	157
PstNI	CAGNNNCTG	1 cut(s)	132
PsuI	RGATCY	2 cut(s)	44, 338
RsaI	GTAC	2 cut(s)	83, 130
RsaNI	GTAC	2 cut(s)	82, 129
RseI	CAYNNNNRTG	1 cut(s)	372
SacI	GAGCTC	1 cut(s)	394
SaqAI	TTAA	2 cut(s)	36, 147
SatI	GCNGC	3 cut(s)	69, 154, 216
Sau3AI	GATC	3 cut(s)	44, 338, 415
ScaI	AGTACT	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	394
SetI	ASST	8 cut(s)	60, 94, 110, 134, 180, 214, 394, 424
SfaNI	GCATC	2 cut(s)	20, 80
SfcI	CTRYAG	2 cut(s)	133, 219
SmiMI	CAYNNNNRTG	1 cut(s)	372
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	2 cut(s)	52, 196
SsiI	CCGC	1 cut(s)	153
SspI	AATATT	1 cut(s)	119
SspMI	CTAG	1 cut(s)	348
SstI	GAGCTC	1 cut(s)	394
StyI	CCWWGG	2 cut(s)	58, 159
TaiI	ACGT	1 cut(s)	110
TaqI	TCGA	1 cut(s)	418
TasI	AATT	2 cut(s)	52, 196
TatI	WGTACW	1 cut(s)	81
TauI	GCSGC	1 cut(s)	156
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	2 cut(s)	36, 147
Tru9I	TTAA	2 cut(s)	36, 147
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	2 cut(s)	68, 215
Tsp45I	GTSAC	1 cut(s)	241
TspRI	CASTG	1 cut(s)	31
XapI	RAATTY	1 cut(s)	196
XceI	RCATGY	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	371
XspI	CTAG	1 cut(s)	348
ZrmI	AGTACT	1 cut(s)	83
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.