Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0024407

Physical Location & Seq

Genomic Coordinates Reverse (-)

9096014 .. 9097192

Gene Structure 1179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g08110.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGATTGCGATCCCTTATTTAACCGCGTTAACCACGTACTTTGGCTATGGATTGCTTTTCGTTTTCGGCCAAGTCAGAGATTTCTTCCGCAAAATCATCGACTGGTGGAGTGCATTCCGATGTTTCAATAGGCTTATTGCAAGTGCTCCTGACGCTTGGTTTGATGTGGTTGAACGCTACTCCAATGACTACAACAAAACACTCAAGCTAACCAAAAAAACCAGTAGATGCCATAACTCGGGATCTTACAATTACTTTGGCTTTGCTGCATCTGATGAGTACTGCACACCTCGCTCTATTGAGACGTTGAAAAAATATTCCCCCAATACTTGTAGTAGCCGAGTTAATGGCTGCACCACGGATTTGCATAATGAGCTGGAAGAGTGTGTTGCAAATTTTGTTGGGAAACCTGCTGCTATAGTTTTCGGAATGGGTTATGTCACAAACTCTGCTATCTTTCCTGTTCTGATGGGGAAGGTTTGCATTTTTCTCAAATGCTTGATTGTTAGTGATTCTTTGAACCACAACTCCATTGTCAATGGCGCAAGAGGATATGGACCTAGAGTTTGTGTTTTCCAACACAATAGTAAGTTCATTAGTTACTATATTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002178 GO:0003674 GO:0003824 GO:0004758 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010506 GO:0010508 GO:0012505 GO:0016020 GO:0016239 GO:0016241 GO:0016408 GO:0016409 GO:0016454 GO:0016740 GO:0016746 GO:0016747 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

205

Amino Acids

23.12

Weight (kDa)

8.93

Isoelectric Point (pI)

24.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024407)

Species	Orthologous Gene IDs
malus_domestica	MD04G1167400.v1.1 MD11G1011200.v1.1
pyrus_communis	pycom01g08110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	418
AccII	CGCG	1 cut(s)	26
AciI	CCGC	2 cut(s)	24, 88
AclWI	GGATC	2 cut(s)	4, 250
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	1 cut(s)	394
AfaI	GTAC	2 cut(s)	38, 281
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	4 cut(s)	127, 173, 310, 520
AloI	GAACNNNNNNTCC	2 cut(s)	512, 544
AluBI	AGCT	2 cut(s)	208, 376
AluI	AGCT	2 cut(s)	208, 376
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	2 cut(s)	4, 250
Ama87I	CYCGRG	1 cut(s)	238
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	3 cut(s)	266, 351, 413
ApoI	RAATTY	1 cut(s)	394
ArsI	GACNNNNNNTTYG	4 cut(s)	143, 175, 549, 581
AspLEI	GCGC	1 cut(s)	545
AspS9I	GGNCC	1 cut(s)	557
AvaI	CYCGRG	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	557
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	3 cut(s)	253, 338, 400
BccI	CCATC	1 cut(s)	463
BcgI	CGANNNNNNTGC	2 cut(s)	79, 113
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	1 cut(s)	561
BfmI	CTRYAG	1 cut(s)	417
BfuAI	ACCTGC	1 cut(s)	418
BisI	GCNGC	3 cut(s)	267, 352, 414
BlsI	GCNGC	3 cut(s)	268, 353, 415
BmcAI	AGTACT	1 cut(s)	281
Bme18I	GGWCC	1 cut(s)	557
BmeT110I	CYCGRG	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	557
BmsI	GCATC	2 cut(s)	218, 278
BpuEI	CTTGAG	1 cut(s)	188
BsaAI	YACGTR	1 cut(s)	36
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	357
BsaXI	ACNNNNNCTCC	2 cut(s)	512, 542
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse1I	ACTGG	2 cut(s)	107, 222
Bse8I	GATNNNNATC	1 cut(s)	8
BseDI	CCNNGG	1 cut(s)	357
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseNI	ACTGG	2 cut(s)	107, 222
BseXI	GCAGC	3 cut(s)	253, 338, 400
BsgI	GTGCAG	2 cut(s)	268, 337
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	238
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	296
BsmBI	CGTCTC	1 cut(s)	296
BsmI	GAATGC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	238
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	9, 242
BspACI	CCGC	2 cut(s)	24, 88
BspANI	GGCC	1 cut(s)	69
BspFNI	CGCG	1 cut(s)	26
BspMI	ACCTGC	1 cut(s)	418
BspPI	GGATC	2 cut(s)	4, 250
BsrI	ACTGG	2 cut(s)	107, 222
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	2 cut(s)	9, 242
Bst6I	CTCTTC	1 cut(s)	375
BstBAI	YACGTR	1 cut(s)	36
BstDSI	CCRYGG	1 cut(s)	357
BstFNI	CGCG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	545
BstKTI	GATC	2 cut(s)	12, 245
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	2 cut(s)	9, 242
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 291, 373
BstSFI	CTRYAG	1 cut(s)	417
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	3 cut(s)	253, 338, 400
BstX2I	RGATCY	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	242
BsuRI	GGCC	1 cut(s)	69
BtgI	CCRYGG	1 cut(s)	357
BveI	ACCTGC	1 cut(s)	418
CfoI	GCGC	1 cut(s)	545
Cfr13I	GGNCC	1 cut(s)	557
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	2 cut(s)	37, 280
CspCI	CAANNNNNGTGG	2 cut(s)	22, 57
CviJI	RGCY	8 cut(s)	45, 69, 133, 208, 261, 339, 351, 376
CviKI_1	RGCY	8 cut(s)	45, 69, 133, 208, 261, 339, 351, 376
CviQI	GTAC	2 cut(s)	37, 280
DpnI	GATC	2 cut(s)	11, 244
DpnII	GATC	2 cut(s)	9, 242
EaeI	YGGCCR	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	557
Eco88I	CYCGRG	1 cut(s)	238
Esp3I	CGTCTC	1 cut(s)	296
FaiI	YATR	8 cut(s)	48, 234, 369, 419, 438, 555, 606, 613
Fnu4HI	GCNGC	3 cut(s)	267, 352, 414
Fsp4HI	GCNGC	3 cut(s)	267, 352, 414
FspBI	CTAG	1 cut(s)	561
GlaI	GCGC	1 cut(s)	544
GluI	GCNGC	3 cut(s)	267, 352, 414
HaeIII	GGCC	1 cut(s)	69
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	1 cut(s)	545
Hin6I	GCGC	1 cut(s)	543
HinP1I	GCGC	1 cut(s)	543
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	1 cut(s)	512
HpaI	GTTAAC	1 cut(s)	30
Hpy166II	GTNNAC	1 cut(s)	30
Hpy188I	TCNGA	5 cut(s)	77, 119, 274, 428, 468
Hpy188III	TCNNGA	2 cut(s)	149, 240
Hpy8I	GTNNAC	1 cut(s)	30
HpyAV	CCTTC	1 cut(s)	469
HpyCH4IV	ACGT	2 cut(s)	35, 305
HpyCH4V	TGCA	8 cut(s)	113, 140, 269, 285, 354, 367, 392, 483
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 291, 373
HpySE526I	ACGT	2 cut(s)	35, 305
HspAI	GCGC	1 cut(s)	543
KspAI	GTTAAC	1 cut(s)	30
Kzo9I	GATC	2 cut(s)	9, 242
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	6 cut(s)	88, 162, 235, 362, 423, 474
Lsp1109I	GCAGC	3 cut(s)	253, 338, 400
LweI	GCATC	2 cut(s)	218, 278
MaeI	CTAG	1 cut(s)	561
MaeII	ACGT	2 cut(s)	35, 305
MaeIII	GTNAC	2 cut(s)	439, 599
MalI	GATC	2 cut(s)	11, 244
MboI	GATC	2 cut(s)	9, 242
MboII	GAAGA	2 cut(s)	76, 392
MflI	RGATCY	1 cut(s)	242
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	2 cut(s)	250, 394
MmeI	TCCRAC	1 cut(s)	601
MnlI	CCTC	2 cut(s)	300, 542
MseI	TTAA	3 cut(s)	20, 29, 345
MslI	CAYNNNNRTG	1 cut(s)	118
Mva1269I	GAATGC	1 cut(s)	113
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	3 cut(s)	152, 291, 373
NdeII	GATC	2 cut(s)	9, 242
NmeAIII	GCCGAG	1 cut(s)	365
NmuCI	GTSAC	1 cut(s)	439
PctI	GAATGC	1 cut(s)	113
PfeI	GAWTC	1 cut(s)	512
PkrI	GCNGC	3 cut(s)	268, 353, 415
Ppu21I	YACGTR	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	557
PsuI	RGATCY	1 cut(s)	242
RsaI	GTAC	2 cut(s)	38, 281
RsaNI	GTAC	2 cut(s)	37, 280
RseI	CAYNNNNRTG	1 cut(s)	118
SaqAI	TTAA	3 cut(s)	20, 29, 345
SatI	GCNGC	3 cut(s)	267, 352, 414
Sau3AI	GATC	2 cut(s)	9, 242
Sau96I	GGNCC	1 cut(s)	557
ScaI	AGTACT	1 cut(s)	281
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	8 cut(s)	38, 210, 292, 308, 378, 412, 480, 562
SfaNI	GCATC	2 cut(s)	218, 278
SfcI	CTRYAG	1 cut(s)	417
SinI	GGWCC	1 cut(s)	557
SmiMI	CAYNNNNRTG	1 cut(s)	118
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	2 cut(s)	250, 394
SsiI	CCGC	2 cut(s)	24, 88
SspI	AATATT	1 cut(s)	317
SspMI	CTAG	1 cut(s)	561
TaiI	ACGT	2 cut(s)	38, 308
TaqI	TCGA	1 cut(s)	99
TasI	AATT	2 cut(s)	250, 394
TatI	WGTACW	1 cut(s)	279
TfiI	GAWTC	1 cut(s)	512
Tru1I	TTAA	3 cut(s)	20, 29, 345
Tru9I	TTAA	3 cut(s)	20, 29, 345
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	3 cut(s)	266, 351, 413
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	1 cut(s)	583
TspGWI	ACGGA	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	557
XapI	RAATTY	1 cut(s)	394
XspI	CTAG	1 cut(s)	561
ZrmI	AGTACT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.