Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0020358

Physical Location & Seq

Genomic Coordinates Reverse (-)

3917444 .. 3919374

Gene Structure 1931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1023800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCTAGCCAGAGAGCTCGTTTTATCCATCTGGAAAAAATGATGCTCATGCAACTTTATTCCACAACCAGGAGTGAAAAGAATGCCAAGATGCTGCTTAAAATTTTGGGAGACAGCGCTAAATCTCTGAACAACATTGGTGAGTTGGAAAGAATTAGAGAGGAGAACAAGGTGCATGTTAAGGAGGAAAGGGCTGTTGAGGCCAAGAAGCCAGAGACTCAGAAGAAGGACGTAGAGAGGAAGCCAAGAAGCCAGCCAGAAACTCAGAAGGACGTAGAGAGGAAGAAGAAGCCAGAAGTTGTAAACAAGAATGGAAGAGAGGAAGCCGGCTCCTCCAGACCTGCTTTGCATCCTGCTGCTGATGAAAGAGACCGAGCTGGAGAGGAGGCTCGCAAGAAGACAATTCCCTGCGCTCGCTGTGGTGGCACGAACACAACGTTTCGTTACTTCAATCAAGGGGATCTCAGGAAGGACACACGTAAGTGTCATGATTGTAACAGAGCGTGGGTTGTAGGTGCAAAATTGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008746 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010033 GO:0010154 GO:0010319 GO:0016020 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016651 GO:0016652 GO:0022414 GO:0030060 GO:0031090 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

177

Amino Acids

20.27

Weight (kDa)

9.88

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	133 - 176	2e-07	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020358)

Species	Orthologous Gene IDs
malus_domestica	MD05G1023800.v1.1 MD06G1194100.v1.1 MD14G1201300.v1.1 MD14G1201400.v1.1
pyrus_communis	pycom06g17210 pycom14g16680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	349
AclI	AACGTT	1 cut(s)	437
AclWI	GGATC	1 cut(s)	468
AcsI	RAATTY	1 cut(s)	102
AfeI	AGCGCT	1 cut(s)	118
AfiI	CCNNNNNNNGG	1 cut(s)	69
AflIII	ACRYGT	1 cut(s)	476
AgsI	TTSAA	1 cut(s)	451
AjnI	CCWGG	1 cut(s)	68
AleI	CACNNNNGTG	1 cut(s)	481
AluBI	AGCT	2 cut(s)	17, 377
AluI	AGCT	2 cut(s)	17, 377
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	3 cut(s)	105, 209, 363
AlwI	GGATC	1 cut(s)	468
Aor51HI	AGCGCT	1 cut(s)	118
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	2 cut(s)	94, 356
ApoI	RAATTY	1 cut(s)	102
AspLEI	GCGC	2 cut(s)	119, 413
AsuHPI	GGTGA	1 cut(s)	152
AsuNHI	GCTAGC	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	2 cut(s)	81, 343
BccI	CCATC	1 cut(s)	36
BciT130I	CCWGG	1 cut(s)	70
BcoDI	GTCTC	3 cut(s)	105, 209, 363
BfaI	CTAG	1 cut(s)	6
BfoI	RGCGCY	1 cut(s)	120
BfuAI	ACCTGC	1 cut(s)	349
BisI	GCNGC	2 cut(s)	95, 357
BlsI	GCNGC	2 cut(s)	96, 358
Bme1390I	CCNGG	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	331
BmrFI	CCNGG	1 cut(s)	70
BmsI	GCATC	3 cut(s)	33, 81, 358
BmtI	GCTAGC	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	404
BpmI	CTGGAG	2 cut(s)	319, 399
BsaAI	YACGTR	1 cut(s)	479
BsaI	GGTCTC	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse118I	RCCGGY	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	70
BseGI	GGATG	1 cut(s)	349
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMII	CTCAG	3 cut(s)	233, 278, 478
BseRI	GAGGAG	3 cut(s)	176, 322, 398
BseXI	GCAGC	2 cut(s)	81, 343
BshFI	GGCC	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	327
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	3 cut(s)	105, 209, 363
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	203
Bso31I	GGTCTC	1 cut(s)	363
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	1 cut(s)	460
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	3 cut(s)	232, 277, 477
BspHI	TCATGA	1 cut(s)	487
BspLI	GGNNCC	1 cut(s)	331
BspMI	ACCTGC	1 cut(s)	349
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	468
BspTNI	GGTCTC	1 cut(s)	363
BsrFI	RCCGGY	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	326
BssMI	GATC	1 cut(s)	460
Bst2UI	CCWGG	1 cut(s)	70
Bst6I	CTCTTC	1 cut(s)	310
BstBAI	YACGTR	1 cut(s)	479
BstC8I	GCNNGC	5 cut(s)	7, 254, 328, 391, 415
BstDEI	CTNAG	3 cut(s)	219, 264, 464
BstF5I	GGATG	1 cut(s)	349
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	2 cut(s)	119, 413
BstKTI	GATC	1 cut(s)	463
BstMAI	GTCTC	3 cut(s)	105, 209, 363
BstMBI	GATC	1 cut(s)	460
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 423
BstNI	CCWGG	1 cut(s)	70
BstNSI	RCATGY	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	68
BstV1I	GCAGC	2 cut(s)	81, 343
BstV2I	GAAGAC	1 cut(s)	404
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
BsuRI	GGCC	1 cut(s)	203
BtsCI	GGATG	1 cut(s)	349
BveI	ACCTGC	1 cut(s)	349
Cac8I	GCNNGC	5 cut(s)	7, 254, 328, 391, 415
CciI	TCATGA	1 cut(s)	487
CfoI	GCGC	2 cut(s)	119, 413
Cfr10I	RCCGGY	1 cut(s)	326
CviAII	CATG	3 cut(s)	49, 176, 488
DdeI	CTNAG	3 cut(s)	219, 264, 464
DpnI	GATC	1 cut(s)	462
DpnII	GATC	1 cut(s)	460
Eam1104I	CTCTTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	310
Ecl136II	GAGCTC	1 cut(s)	17
Eco24I	GRGCYC	1 cut(s)	19
Eco31I	GGTCTC	1 cut(s)	363
Eco47III	AGCGCT	1 cut(s)	118
Eco53kI	GAGCTC	1 cut(s)	17
EcoICRI	GAGCTC	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	19
FaeI	CATG	3 cut(s)	52, 179, 491
FaiI	YATR	3 cut(s)	50, 177, 489
FatI	CATG	3 cut(s)	48, 175, 487
Fnu4HI	GCNGC	2 cut(s)	95, 357
FokI	GGATG	1 cut(s)	336
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	2 cut(s)	95, 357
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	2 cut(s)	118, 412
GluI	GCNGC	2 cut(s)	95, 357
GsuI	CTGGAG	2 cut(s)	319, 399
HaeII	RGCGCY	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	1 cut(s)	327
HhaI	GCGC	2 cut(s)	119, 413
Hin1II	CATG	3 cut(s)	52, 179, 491
Hin6I	GCGC	2 cut(s)	117, 411
HinP1I	GCGC	2 cut(s)	117, 411
HinfI	GANTC	1 cut(s)	217
HpaII	CCGG	1 cut(s)	327
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	3 cut(s)	129, 222, 267
Hpy188III	TCNNGA	4 cut(s)	32, 336, 466, 488
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	3 cut(s)	220, 262, 463
HpyCH4IV	ACGT	4 cut(s)	231, 273, 437, 478
HpyCH4V	TGCA	4 cut(s)	52, 175, 349, 518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 423
HpyF3I	CTNAG	3 cut(s)	219, 264, 464
HpySE526I	ACGT	4 cut(s)	231, 273, 437, 478
Hsp92II	CATG	3 cut(s)	52, 179, 491
HspAI	GCGC	2 cut(s)	117, 411
KroI	GCCGGC	1 cut(s)	326
KroNI	GCCGGC	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	460
LmnI	GCTCC	1 cut(s)	335
Lsp1109I	GCAGC	2 cut(s)	81, 343
LweI	GCATC	3 cut(s)	33, 81, 358
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	4 cut(s)	231, 273, 437, 478
MaeIII	GTNAC	2 cut(s)	443, 494
MalI	GATC	1 cut(s)	462
MboI	GATC	1 cut(s)	460
MboII	GAAGA	5 cut(s)	235, 295, 298, 327, 409
MflI	RGATCY	1 cut(s)	460
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	4 cut(s)	102, 153, 402, 521
MlyI	GAGTC	1 cut(s)	211
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	9 cut(s)	154, 178, 193, 231, 273, 313, 343, 376, 379
MroNI	GCCGGC	1 cut(s)	326
MseI	TTAA	2 cut(s)	99, 180
MslI	CAYNNNNRTG	1 cut(s)	481
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	1 cut(s)	70
Mva1269I	GAATGC	1 cut(s)	88
MvaI	CCWGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	2 cut(s)	200, 423
NaeI	GCCGGC	1 cut(s)	328
NdeII	GATC	1 cut(s)	460
NgoMIV	GCCGGC	1 cut(s)	326
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	3 cut(s)	52, 179, 491
NlaIV	GGNNCC	1 cut(s)	331
NspI	RCATGY	1 cut(s)	179
OliI	CACNNNNGTG	1 cut(s)	481
PagI	TCATGA	1 cut(s)	487
PcsI	WCGNNNNNNNCGW	1 cut(s)	434
PctI	GAATGC	1 cut(s)	88
PdiI	GCCGGC	1 cut(s)	328
PkrI	GCNGC	2 cut(s)	96, 358
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Ppu21I	YACGTR	1 cut(s)	479
Psp124BI	GAGCTC	1 cut(s)	19
Psp1406I	AACGTT	1 cut(s)	437
Psp6I	CCWGG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	460
RseI	CAYNNNNRTG	1 cut(s)	481
SacI	GAGCTC	1 cut(s)	19
SaqAI	TTAA	2 cut(s)	99, 180
SatI	GCNGC	2 cut(s)	95, 357
Sau3AI	GATC	1 cut(s)	460
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	9 cut(s)	19, 174, 234, 276, 343, 379, 440, 481, 517
SfaNI	GCATC	3 cut(s)	33, 81, 358
SmiMI	CAYNNNNRTG	1 cut(s)	481
Sse9I	AATT	4 cut(s)	102, 153, 402, 521
SspMI	CTAG	1 cut(s)	6
SstI	GAGCTC	1 cut(s)	19
StyD4I	CCNGG	1 cut(s)	68
TaiI	ACGT	4 cut(s)	234, 276, 440, 481
TaqII	GACCGA	1 cut(s)	387
TasI	AATT	4 cut(s)	102, 153, 402, 521
Tru1I	TTAA	2 cut(s)	99, 180
Tru9I	TTAA	2 cut(s)	99, 180
TseI	GCWGC	2 cut(s)	94, 356
TspDTI	ATGAA	1 cut(s)	378
XapI	RAATTY	1 cut(s)	102
XceI	RCATGY	1 cut(s)	179
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.