Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0020358

Physical Location & Seq

Genomic Coordinates Reverse (-)

29029745 .. 29030691

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1201300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTTGTCAGGAAAACATGAAGCTCATCCAACTTGTTTCCGAAACCAAAAATGCAAATGTTGTCGCTGCATCAATCTGAACACCGAGATCTTGCTTAAACTCTTGGAAGACAGGACGTATCCTTTCGCTTCTAAATGTGTGGAAAACCTTGTGGAGTTGGAAAAAATCAGAGAGGCGAGCAAGGCGCTTGTTAAGGAGGACGACAGGGATGTGAAGGAGAAGCCGGGAATTCAGAAGCGGGATGTAAAGAGGAAGAGGCCTGCTGAGAAGAAGCTTCAGAAGAAGGATGGGAGAGAGGAAGCTTGCTCCTCTAGACCTGCTTTGCAGCCTTGTGGTGATGAAATAGTCCGAGCCAGAGAGGAGGCATACAAGAAGATACTCCCCTGCCCTCGTTGTGATAGCAGGAACACAACATTTGACAAGTTCAGTCGTAACAATCCCAGTAAACCAGTACGTGCATGCAAAGATTGCAAAAGAAGCTGGGTTGCACGCGGGAACTTGGGAAGGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008746 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010033 GO:0010154 GO:0010319 GO:0016020 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016651 GO:0016652 GO:0022414 GO:0030060 GO:0031090 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

171

Amino Acids

19.58

Weight (kDa)

9.55

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	125 - 167	2.2e-10	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020358)

Species	Orthologous Gene IDs
malus_domestica	MD05G1023800.v1.1 MD06G1194100.v1.1 MD14G1201300.v1.1 MD14G1201400.v1.1
pyrus_communis	pycom06g17210 pycom14g16680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	325
AccII	CGCG	1 cut(s)	492
AciI	CCGC	2 cut(s)	238, 492
AcsI	RAATTY	1 cut(s)	228
AcuI	CTGAAG	1 cut(s)	260
AfaI	GTAC	1 cut(s)	453
AluBI	AGCT	4 cut(s)	23, 274, 302, 480
AluI	AGCT	4 cut(s)	23, 274, 302, 480
AoxI	GGCC	1 cut(s)	257
ApeKI	GCWGC	2 cut(s)	66, 325
ApoI	RAATTY	1 cut(s)	228
AspLEI	GCGC	1 cut(s)	187
AsuC2I	CCSGG	1 cut(s)	225
AsuHPI	GGTGA	1 cut(s)	347
BbsI	GAAGAC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	53, 337
BccI	CCATC	1 cut(s)	281
BciVI	GTATCC	1 cut(s)	129
BcnI	CCSGG	1 cut(s)	225
BfaI	CTAG	2 cut(s)	312, 511
BfoI	RGCGCY	1 cut(s)	188
BfuAI	ACCTGC	1 cut(s)	325
BfuI	GTATCC	1 cut(s)	129
BglII	AGATCT	1 cut(s)	87
BisI	GCNGC	2 cut(s)	67, 326
BlsI	GCNGC	2 cut(s)	68, 327
Bme1390I	CCNGG	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	225
BmrI	ACTGGG	1 cut(s)	435
BmsI	GCATC	1 cut(s)	78
BmuI	ACTGGG	1 cut(s)	435
BpiI	GAAGAC	1 cut(s)	114
BpuMI	CCSGG	1 cut(s)	225
BsaAI	YACGTR	1 cut(s)	455
Bse1I	ACTGG	2 cut(s)	441, 449
BseGI	GGATG	4 cut(s)	25, 214, 247, 292
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	2 cut(s)	441, 449
BseRI	GAGGAG	2 cut(s)	298, 374
BseXI	GCAGC	2 cut(s)	53, 337
BseYI	CCCAGC	1 cut(s)	480
Bsh1236I	CGCG	1 cut(s)	492
BshFI	GGCC	1 cut(s)	259
BsiSI	CCGG	1 cut(s)	224
BsnI	GGCC	1 cut(s)	259
Bsp143I	GATC	1 cut(s)	87
BspACI	CCGC	2 cut(s)	238, 492
BspANI	GGCC	1 cut(s)	259
BspCNI	CTCAG	1 cut(s)	256
BspFNI	CGCG	1 cut(s)	492
BspMI	ACCTGC	1 cut(s)	325
BsrI	ACTGG	2 cut(s)	441, 449
BssMI	GATC	1 cut(s)	87
Bst6I	CTCTTC	1 cut(s)	248
BstAPI	GCANNNNNTGC	1 cut(s)	468
BstBAI	YACGTR	1 cut(s)	455
BstC8I	GCNNGC	5 cut(s)	178, 261, 304, 460, 490
BstDEI	CTNAG	1 cut(s)	264
BstF5I	GGATG	4 cut(s)	25, 214, 247, 292
BstFNI	CGCG	1 cut(s)	492
BstH2I	RGCGCY	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	1 cut(s)	90
BstMBI	GATC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 468, 477
BstNSI	RCATGY	1 cut(s)	462
BstSCI	CCNGG	1 cut(s)	223
BstUI	CGCG	1 cut(s)	492
BstV1I	GCAGC	2 cut(s)	53, 337
BstV2I	GAAGAC	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BsuI	GTATCC	1 cut(s)	129
BsuRI	GGCC	1 cut(s)	259
BtsCI	GGATG	4 cut(s)	25, 214, 247, 292
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	5 cut(s)	178, 261, 304, 460, 490
CfoI	GCGC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	452
CviAII	CATG	2 cut(s)	17, 459
CviJI	RGCY	9 cut(s)	23, 223, 259, 274, 302, 328, 353, 480, 510
CviKI_1	RGCY	9 cut(s)	23, 223, 259, 274, 302, 328, 353, 480, 510
CviQI	GTAC	1 cut(s)	452
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
Eco147I	AGGCCT	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	260
EcoRI	GAATTC	1 cut(s)	228
FaeI	CATG	2 cut(s)	20, 462
FaiI	YATR	3 cut(s)	18, 367, 460
FatI	CATG	2 cut(s)	16, 458
FauI	CCCGC	2 cut(s)	231, 485
Fnu4HI	GCNGC	2 cut(s)	67, 326
FokI	GGATG	4 cut(s)	12, 221, 254, 299
Fsp4HI	GCNGC	2 cut(s)	67, 326
FspBI	CTAG	2 cut(s)	312, 511
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	2 cut(s)	67, 326
GsaI	CCCAGC	1 cut(s)	484
HaeII	RGCGCY	1 cut(s)	188
HaeIII	GGCC	1 cut(s)	259
HapII	CCGG	1 cut(s)	224
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	2 cut(s)	20, 462
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HindIII	AAGCTT	2 cut(s)	272, 300
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	1 cut(s)	446
Hpy188I	TCNGA	6 cut(s)	41, 78, 170, 234, 279, 350
Hpy188III	TCNNGA	2 cut(s)	9, 312
Hpy8I	GTNNAC	1 cut(s)	446
HpyAV	CCTTC	3 cut(s)	208, 277, 498
HpyCH4IV	ACGT	2 cut(s)	116, 454
HpyCH4V	TGCA	7 cut(s)	54, 69, 325, 458, 462, 471, 488
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 468, 477
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	2 cut(s)	116, 454
Hsp92II	CATG	2 cut(s)	20, 462
HspAI	GCGC	1 cut(s)	185
Kzo9I	GATC	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	311
Lsp1109I	GCAGC	2 cut(s)	53, 337
LweI	GCATC	1 cut(s)	78
MaeI	CTAG	2 cut(s)	312, 511
MaeII	ACGT	2 cut(s)	116, 454
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MboII	GAAGA	5 cut(s)	119, 265, 280, 292, 385
MflI	RGATCY	1 cut(s)	87
MluCI	AATT	1 cut(s)	228
MmeI	TCCRAC	2 cut(s)	53, 138
MnlI	CCTC	9 cut(s)	166, 190, 243, 249, 289, 319, 352, 355, 399
MseI	TTAA	2 cut(s)	96, 192
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	225
MvnI	CGCG	1 cut(s)	492
MwoI	GCNNNNNNNGC	3 cut(s)	182, 468, 477
NciI	CCSGG	1 cut(s)	225
NdeII	GATC	1 cut(s)	87
NlaIII	CATG	2 cut(s)	20, 462
NspI	RCATGY	1 cut(s)	462
PaeI	GCATGC	1 cut(s)	462
PceI	AGGCCT	1 cut(s)	259
PkrI	GCNGC	2 cut(s)	68, 327
Ppu21I	YACGTR	1 cut(s)	455
PspFI	CCCAGC	1 cut(s)	480
PsuI	RGATCY	1 cut(s)	87
RsaI	GTAC	1 cut(s)	453
RsaNI	GTAC	1 cut(s)	452
SaqAI	TTAA	2 cut(s)	96, 192
SatI	GCNGC	2 cut(s)	67, 326
Sau3AI	GATC	1 cut(s)	87
ScrFI	CCNGG	1 cut(s)	225
SetI	ASST	8 cut(s)	25, 119, 150, 276, 304, 319, 457, 482
SfaNI	GCATC	1 cut(s)	78
SphI	GCATGC	1 cut(s)	462
Sse9I	AATT	1 cut(s)	228
SseBI	AGGCCT	1 cut(s)	259
SsiI	CCGC	2 cut(s)	238, 492
SspMI	CTAG	2 cut(s)	312, 511
StuI	AGGCCT	1 cut(s)	259
StyD4I	CCNGG	1 cut(s)	223
TaiI	ACGT	2 cut(s)	119, 457
TasI	AATT	1 cut(s)	228
Tru1I	TTAA	2 cut(s)	96, 192
Tru9I	TTAA	2 cut(s)	96, 192
TseI	GCWGC	2 cut(s)	66, 325
TspDTI	ATGAA	2 cut(s)	33, 354
XapI	RAATTY	1 cut(s)	228
XbaI	TCTAGA	1 cut(s)	311
XceI	RCATGY	1 cut(s)	462
XspI	CTAG	2 cut(s)	312, 511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.