Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0020358

Physical Location & Seq

Genomic Coordinates Reverse (-)

32895163 .. 32897161

Gene Structure 1999 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1194100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGTTCGTATGCGGTTACCGGGAGGGACAAAGAGAGAGACAACTAGTCGTGGGGAAGAAATTGGCGACCAAGTTGATTTACTCGACTTACAACGTGAAATTGGTCAAGATGAGAAGGAAAAGCATAAGATTGGGGATCAAACCGATGGCTTTGCTACAGTCTCAGTTCAAAGTTTCCATGAGGAAAACATGAAGCTCATCCAACTTGTTTCCGAAACCAAAAACGCGAAGAACACCGAGATCTTGCTTAAACTTTTGGAAGACAGGACTAAATGTGTGGAAAACCTTGTGGAGTTGGAAAAAATCAGAGAGGCGAACAAGGCGCTTGGTAAGGAGGACGACAGGGATGTGAAGGATAAGAAGCCGGAAATTCAGAAGCGGGATGCAAAGAGGAAGAGGCCAGCTGAGAAGAAGCAAGAACTTCAGAAGAAGGATGGCAAAGAGGAAGCTTCCTCGTCCAGACCTGCTTTGCAGCCTAGTGGTGATGAAATAGTCCGAGCTAGAGAGAAGGCACAGAAGAAGATACTCCCCTGCCCCCGTTGTGATAGCAGGAACACAATATTTGACAAGTTCAGTCGTAACAATCTCAGTAAACCGGTACGTTCATGCAAAGATTGCAAAAGAAGCTGGGTTGCACGCGGGAACTTGGGAAGAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008746 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010033 GO:0010154 GO:0010319 GO:0016020 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016651 GO:0016652 GO:0022414 GO:0030060 GO:0031090 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055114 GO:0061458 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

220

Amino Acids

25.07

Weight (kDa)

9.43

Isoelectric Point (pI)

55.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	174 - 216	2e-10	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0020358)

Species	Orthologous Gene IDs
malus_domestica	MD05G1023800.v1.1 MD06G1194100.v1.1 MD14G1201300.v1.1 MD14G1201400.v1.1
pyrus_communis	pycom06g17210 pycom14g16680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	472
AccII	CGCG	2 cut(s)	227, 639
AciI	CCGC	3 cut(s)	13, 379, 639
AclWI	GGATC	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	369
AcuI	CTGAAG	1 cut(s)	407
AfaI	GTAC	1 cut(s)	600
AgeI	ACCGGT	1 cut(s)	595
AgsI	TTSAA	1 cut(s)	170
AhdI	GACNNNNNGTC	1 cut(s)	45
AhlI	ACTAGT	1 cut(s)	44
AluBI	AGCT	5 cut(s)	196, 404, 449, 500, 627
AluI	AGCT	5 cut(s)	196, 404, 449, 500, 627
Alw26I	GTCTC	2 cut(s)	32, 166
AlwI	GGATC	1 cut(s)	144
AoxI	GGCC	1 cut(s)	398
ApeKI	GCWGC	1 cut(s)	472
ApoI	RAATTY	1 cut(s)	369
AsiGI	ACCGGT	1 cut(s)	595
AspLEI	GCGC	1 cut(s)	325
AsuC2I	CCSGG	1 cut(s)	21
AsuHPI	GGTGA	1 cut(s)	494
BbsI	GAAGAC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	484
BccI	CCATC	2 cut(s)	140, 428
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BcnI	CCSGG	1 cut(s)	21
BcoDI	GTCTC	2 cut(s)	32, 166
BcuI	ACTAGT	1 cut(s)	44
BfaI	CTAG	4 cut(s)	45, 477, 501, 658
BfmI	CTRYAG	1 cut(s)	156
BfoI	RGCGCY	1 cut(s)	326
BfuAI	ACCTGC	1 cut(s)	472
BglII	AGATCT	1 cut(s)	240
BisI	GCNGC	1 cut(s)	473
BlsI	GCNGC	1 cut(s)	474
Bme1390I	CCNGG	1 cut(s)	21
BmeRI	GACNNNNNGTC	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	21
BmsI	GCATC	1 cut(s)	373
BpiI	GAAGAC	1 cut(s)	267
BpuMI	CCSGG	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	595
Bse118I	RCCGGY	1 cut(s)	595
BseGI	GGATG	4 cut(s)	198, 352, 388, 439
BseMII	CTCAG	3 cut(s)	177, 396, 601
BseXI	GCAGC	1 cut(s)	484
BseYI	CCCAGC	1 cut(s)	627
Bsh1236I	CGCG	2 cut(s)	227, 639
BshFI	GGCC	1 cut(s)	400
BshTI	ACCGGT	1 cut(s)	595
BsiSI	CCGG	3 cut(s)	20, 365, 596
BslFI	GGGAC	1 cut(s)	40
BsmAI	GTCTC	2 cut(s)	32, 166
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	400
Bsp143I	GATC	2 cut(s)	136, 240
BspACI	CCGC	3 cut(s)	13, 379, 639
BspANI	GGCC	1 cut(s)	400
BspCNI	CTCAG	3 cut(s)	176, 397, 600
BspFNI	CGCG	2 cut(s)	227, 639
BspMI	ACCTGC	1 cut(s)	472
BspPI	GGATC	1 cut(s)	144
BsrFI	RCCGGY	1 cut(s)	595
BssAI	RCCGGY	1 cut(s)	595
BssMI	GATC	2 cut(s)	136, 240
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	2 cut(s)	389, 646
BstAPI	GCANNNNNTGC	1 cut(s)	615
BstC8I	GCNNGC	2 cut(s)	402, 637
BstDEI	CTNAG	3 cut(s)	163, 405, 587
BstEII	GGTNACC	1 cut(s)	15
BstF5I	GGATG	4 cut(s)	198, 352, 388, 439
BstFNI	CGCG	2 cut(s)	227, 639
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	2 cut(s)	139, 243
BstMAI	GTCTC	2 cut(s)	32, 166
BstMBI	GATC	2 cut(s)	136, 240
BstMWI	GCNNNNNNNGC	3 cut(s)	320, 615, 624
BstPI	GGTNACC	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	19
BstSFI	CTRYAG	1 cut(s)	156
BstUI	CGCG	2 cut(s)	227, 639
BstV1I	GCAGC	1 cut(s)	484
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	1 cut(s)	240
BstYI	RGATCY	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	400
BtsCI	GGATG	4 cut(s)	198, 352, 388, 439
BveI	ACCTGC	1 cut(s)	472
Cac8I	GCNNGC	2 cut(s)	402, 637
CfoI	GCGC	1 cut(s)	325
Cfr10I	RCCGGY	1 cut(s)	595
Csp6I	GTAC	1 cut(s)	599
CspAI	ACCGGT	1 cut(s)	595
CviAII	CATG	3 cut(s)	179, 190, 606
CviQI	GTAC	1 cut(s)	599
DdeI	CTNAG	3 cut(s)	163, 405, 587
DpnI	GATC	2 cut(s)	138, 242
DpnII	GATC	2 cut(s)	136, 240
DriI	GACNNNNNGTC	1 cut(s)	45
Eam1104I	CTCTTC	2 cut(s)	389, 646
Eam1105I	GACNNNNNGTC	1 cut(s)	45
EarI	CTCTTC	2 cut(s)	389, 646
Eco57I	CTGAAG	1 cut(s)	407
Eco91I	GGTNACC	1 cut(s)	15
EcoO65I	GGTNACC	1 cut(s)	15
FaeI	CATG	3 cut(s)	182, 193, 609
FaiI	YATR	5 cut(s)	11, 126, 180, 191, 607
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	3 cut(s)	178, 189, 605
FauI	CCCGC	2 cut(s)	372, 632
Fnu4HI	GCNGC	1 cut(s)	473
FokI	GGATG	4 cut(s)	185, 359, 395, 446
Fsp4HI	GCNGC	1 cut(s)	473
FspBI	CTAG	4 cut(s)	45, 477, 501, 658
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	1 cut(s)	473
GsaI	CCCAGC	1 cut(s)	631
HaeII	RGCGCY	1 cut(s)	326
HaeIII	GGCC	1 cut(s)	400
HapII	CCGG	3 cut(s)	20, 365, 596
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	3 cut(s)	182, 193, 609
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HindIII	AAGCTT	1 cut(s)	447
HpaII	CCGG	3 cut(s)	20, 365, 596
HphI	GGTGA	1 cut(s)	494
Hpy166II	GTNNAC	1 cut(s)	593
Hpy188I	TCNGA	5 cut(s)	214, 308, 375, 426, 497
Hpy188III	TCNNGA	2 cut(s)	107, 459
Hpy8I	GTNNAC	1 cut(s)	593
HpyAV	CCTTC	4 cut(s)	109, 346, 424, 502
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	2 cut(s)	94, 601
HpyCH4V	TGCA	5 cut(s)	386, 472, 609, 618, 635
HpyF10VI	GCNNNNNNNGC	3 cut(s)	320, 615, 624
HpyF3I	CTNAG	3 cut(s)	163, 405, 587
HpySE526I	ACGT	2 cut(s)	94, 601
Hsp92II	CATG	3 cut(s)	182, 193, 609
HspAI	GCGC	1 cut(s)	323
Kzo9I	GATC	2 cut(s)	136, 240
Lsp1109I	GCAGC	1 cut(s)	484
LweI	GCATC	1 cut(s)	373
MaeI	CTAG	4 cut(s)	45, 477, 501, 658
MaeII	ACGT	2 cut(s)	94, 601
MaeIII	GTNAC	2 cut(s)	15, 578
MalI	GATC	2 cut(s)	138, 242
MboI	GATC	2 cut(s)	136, 240
MboII	GAAGA	8 cut(s)	68, 241, 272, 406, 421, 439, 529, 532
MflI	RGATCY	1 cut(s)	240
MluCI	AATT	3 cut(s)	60, 99, 369
MmeI	TCCRAC	2 cut(s)	226, 276
MnlI	CCTC	9 cut(s)	17, 175, 304, 328, 384, 390, 436, 463, 647
MseI	TTAA	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	3 cut(s)	20, 365, 596
MspR9I	CCNGG	1 cut(s)	21
MvnI	CGCG	2 cut(s)	227, 639
MwoI	GCNNNNNNNGC	3 cut(s)	320, 615, 624
NciI	CCSGG	1 cut(s)	21
NdeII	GATC	2 cut(s)	136, 240
NlaIII	CATG	3 cut(s)	182, 193, 609
PinAI	ACCGGT	1 cut(s)	595
PkrI	GCNGC	1 cut(s)	474
PspEI	GGTNACC	1 cut(s)	15
PspFI	CCCAGC	1 cut(s)	627
PsuI	RGATCY	1 cut(s)	240
PvuII	CAGCTG	1 cut(s)	404
RsaI	GTAC	1 cut(s)	600
RsaNI	GTAC	1 cut(s)	599
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	1 cut(s)	473
Sau3AI	GATC	2 cut(s)	136, 240
ScrFI	CCNGG	1 cut(s)	21
SetI	ASST	9 cut(s)	97, 198, 288, 406, 451, 466, 502, 604, 629
SfaNI	GCATC	1 cut(s)	373
SfcI	CTRYAG	1 cut(s)	156
SpeI	ACTAGT	1 cut(s)	44
Sse9I	AATT	3 cut(s)	60, 99, 369
SsiI	CCGC	3 cut(s)	13, 379, 639
SspI	AATATT	1 cut(s)	561
SspMI	CTAG	4 cut(s)	45, 477, 501, 658
StyD4I	CCNGG	1 cut(s)	19
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	2 cut(s)	97, 604
TaqI	TCGA	1 cut(s)	84
TasI	AATT	3 cut(s)	60, 99, 369
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TseI	GCWGC	1 cut(s)	472
TspDTI	ATGAA	3 cut(s)	206, 501, 594
XapI	RAATTY	1 cut(s)	369
XspI	CTAG	4 cut(s)	45, 477, 501, 658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.