MD05G1034900.v1.1

Protein of unknown function, DUF573

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0024302
Physical Location & Seq
Forward (+)
5655351 .. 5656274
924 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1034900.v1.1.491

Sequence Viewer

Length: 924 bp
ATGCAGCAGCCCACTCCTCTACCCTCCACCCTCCTCCGCTACCAAGCTCCCCATCAAACGCAAAAAACCCCGACTCCATTAACCCTAACCCTAAACCTCTTCTCTCCCCAACTCCTCAGTGACTTCAACGACGTCGTCCTCGTCCCAACCCCACCAGATTCATATGCCCAAACCCTCAGCACCGCCAGAACGCCCCCGTTTAAGTACCACCGAGTCTGGACCGAGCCCGACGAGCTTCTCTTCCTCCAAGGCCTCCTCGACTGCGCCTCCCATGGTGGCTTCTCCTTCCCCAAAGACCTCCGCCTCTTCTACGGCCGCTTCTCCGCCACCGTCTCTCACTCCTACACCAAATCCCAGCTCTCCGAGAAGCTCCGCCGCCTCCGGAAAAAGTTCCGAGTCGTCTCGTCCCGCCTCACTCGCGGCCTCTGCGAGTCCCAGCTCTCGCCTCACGATCGCGCCCTGTACGACCTCTCCAGGAAGCTCTGGAGCCCCGAGTGCTGGTCCACTTCCCCGTTCGGTAACAGAGAAAAGAGCGACGCCGGAGAGTCTGATAATTTGGCGGCGGCGGATGAGAATCTGAATCAGAATAAGAACCAGAGCGTTTCGGATGATCTCGATGTCGAAAATGATAGCGGCGATGAGGTGAAGACGACGAGCGAGTTGGCACGGCCCATTGCTGCGCTGGCGGCGAATAGTGTTCTGGACGTGTTTGATCAGTCTCTCAATGAGGTTCGGATGCTTCTTGTTCAACAGGGTGTGCTCTGTTCTGACCCGGTTCGTTTGGCTTCGGGTTCGGGTTCTTCGAATGAGGGGAAGACTGCAATGGACTTCGAGACGCAGTGGCAGCTCCAACGCCTTGCTGAATTGGATGTGTTGGCTCAGAGATTGAGGTTGGTTCTCGAAGACTCGAATCGGTGGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF573

Protein Analysis

308

Amino Acids

34.5

Weight (kDa)

5.63

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GeBP-like_DBD PF04504 70 - 163 6.8e-22 Glabrous-enhancer-binding protein-like family, DBD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024302)

Species Orthologous Gene IDs
malus_domestica MD05G1034900.v1.1 MD09G1264200.v1.1
prunus_persica Prupe.3G161700_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 135
AccII CGCG 2 cut(s) 420, 456
AccIII TCCGGA 1 cut(s) 381
AcoI YGGCCR 1 cut(s) 313
AcyI GRCGYC 2 cut(s) 132, 537
AfaI GTAC 2 cut(s) 206, 464
AfiI CCNNNNNNNGG 1 cut(s) 498
AflIII ACRYGT 1 cut(s) 705
AgsI TTSAA 2 cut(s) 127, 749
AjiI CACGTC 1 cut(s) 706
AjnI CCWGG 1 cut(s) 473
AluBI AGCT 7 cut(s) 47, 235, 358, 370, 439, 481, 847
AluI AGCT 7 cut(s) 47, 235, 358, 370, 439, 481, 847
Alw21I GWGCWC 1 cut(s) 762
Alw26I GTCTC 4 cut(s) 337, 406, 723, 827
Ama87I CYCGRG 1 cut(s) 491
Aor13HI TCCGGA 1 cut(s) 381
AoxI GGCC 4 cut(s) 250, 313, 421, 668
ApeKI GCWGC 4 cut(s) 4, 7, 677, 844
Asp700I GAANNNNTTC 1 cut(s) 389
AspLEI GCGC 3 cut(s) 266, 458, 682
AspS9I GGNCC 3 cut(s) 219, 501, 669
AsuC2I CCSGG 1 cut(s) 773
AsuHPI GGTGA 1 cut(s) 655
AsuII TTCGAA 1 cut(s) 803
AvaI CYCGRG 1 cut(s) 491
AvaII GGWCC 2 cut(s) 219, 501
BanII GRGCYC 2 cut(s) 228, 491
BbsI GAAGAC 3 cut(s) 653, 821, 909
Bbv12I GWGCWC 1 cut(s) 762
BbvCI CCTCAGC 1 cut(s) 176
BbvI GCAGC 4 cut(s) 16, 19, 664, 856
BccI CCATC 1 cut(s) 60
BceAI ACGGC 2 cut(s) 328, 683
BciT130I CCWGG 1 cut(s) 475
BclI TGATCA 1 cut(s) 712
BcnI CCSGG 1 cut(s) 773
BcoDI GTCTC 4 cut(s) 337, 406, 723, 827
Bme1390I CCNGG 2 cut(s) 475, 773
Bme18I GGWCC 2 cut(s) 219, 501
BmeT110I CYCGRG 1 cut(s) 491
BmgBI CACGTC 1 cut(s) 706
BmgT120I GGNCC 3 cut(s) 219, 501, 669
BmiI GGNNCC 1 cut(s) 488
BmrFI CCNGG 2 cut(s) 475, 773
BmsI GCATC 1 cut(s) 726
BpiI GAAGAC 3 cut(s) 653, 821, 909
BpmI CTGGAG 2 cut(s) 457, 505
Bpu10I CCTNAGC 1 cut(s) 176
Bpu14I TTCGAA 1 cut(s) 803
BpuMI CCSGG 1 cut(s) 773
BsaBI GATNNNNATC 1 cut(s) 573
BsaHI GRCGYC 2 cut(s) 132, 537
BsaJI CCNNGG 2 cut(s) 247, 271
BsaWI WCCGGW 1 cut(s) 381
BsaXI ACNNNNNCTCC 6 cut(s) 58, 88, 251, 281, 455, 485
Bsc4I CCNNNNNNNGG 1 cut(s) 498
Bse3DI GCAATG 2 cut(s) 672, 828
Bse8I GATNNNNATC 1 cut(s) 573
BseAI TCCGGA 1 cut(s) 381
BseBI CCWGG 1 cut(s) 475
BseDI CCNNGG 2 cut(s) 247, 271
BseGI GGATG 4 cut(s) 574, 613, 741, 874
BseJI GATNNNNATC 1 cut(s) 573
BseLI CCNNNNNNNGG 1 cut(s) 498
BseMI GCAATG 2 cut(s) 672, 828
BseMII CTCAG 3 cut(s) 130, 190, 893
BseRI GAGGAG 4 cut(s) 6, 23, 104, 245
BseX3I CGGCCG 1 cut(s) 313
BseXI GCAGC 4 cut(s) 16, 19, 664, 856
BseYI CCCAGC 2 cut(s) 354, 435
Bsh1236I CGCG 2 cut(s) 420, 456
Bsh1285I CGRYCG 2 cut(s) 316, 454
BshFI GGCC 4 cut(s) 252, 315, 423, 670
BsiEI CGRYCG 2 cut(s) 316, 454
BsiHKAI GWGCWC 1 cut(s) 762
BsiHKCI CYCGRG 1 cut(s) 491
BsiSI CCGG 3 cut(s) 382, 540, 773
BslFI GGGAC 3 cut(s) 128, 391, 418
BslI CCNNNNNNNGG 1 cut(s) 498
BsmAI GTCTC 4 cut(s) 337, 406, 723, 827
BsmBI CGTCTC 3 cut(s) 337, 406, 827
BsmFI GGGAC 3 cut(s) 128, 391, 418
BsnI GGCC 4 cut(s) 252, 315, 423, 670
BsoBI CYCGRG 1 cut(s) 491
Bsp119I TTCGAA 1 cut(s) 803
Bsp1286I GDGCHC 3 cut(s) 228, 491, 762
Bsp13I TCCGGA 1 cut(s) 381
Bsp143I GATC 3 cut(s) 451, 610, 712
Bsp19I CCATGG 1 cut(s) 271
BspANI GGCC 4 cut(s) 252, 315, 423, 670
BspCNI CTCAG 3 cut(s) 129, 189, 892
BspEI TCCGGA 1 cut(s) 381
BspFNI CGCG 2 cut(s) 420, 456
BspLI GGNNCC 1 cut(s) 488
BspT104I TTCGAA 1 cut(s) 803
BsrDI GCAATG 2 cut(s) 672, 828
BssECI CCNNGG 2 cut(s) 247, 271
BssMI GATC 3 cut(s) 451, 610, 712
BssNI GRCGYC 2 cut(s) 132, 537
BssT1I CCWWGG 2 cut(s) 247, 271
Bst2UI CCWGG 1 cut(s) 475
Bst4CI ACNGT 1 cut(s) 331
Bst6I CTCTTC 3 cut(s) 104, 245, 311
BstACI GRCGYC 2 cut(s) 132, 537
BstBI TTCGAA 1 cut(s) 803
BstC8I GCNNGC 1 cut(s) 684
BstDEI CTNAG 3 cut(s) 116, 176, 879
BstDSI CCRYGG 1 cut(s) 271
BstF5I GGATG 4 cut(s) 574, 613, 741, 874
BstFNI CGCG 2 cut(s) 420, 456
BstHHI GCGC 3 cut(s) 266, 458, 682
BstKTI GATC 3 cut(s) 454, 613, 715
BstMAI GTCTC 4 cut(s) 337, 406, 723, 827
BstMBI GATC 3 cut(s) 451, 610, 712
BstMCI CGRYCG 2 cut(s) 316, 454
BstMWI GCNNNNNNNGC 7 cut(s) 232, 417, 426, 495, 683, 686, 844
BstNI CCWGG 1 cut(s) 475
BstSCI CCNGG 2 cut(s) 473, 771
BstUI CGCG 2 cut(s) 420, 456
BstV1I GCAGC 4 cut(s) 16, 19, 664, 856
BstV2I GAAGAC 3 cut(s) 653, 821, 909
BstZI CGGCCG 1 cut(s) 313
BsuRI GGCC 4 cut(s) 252, 315, 423, 670
BtgI CCRYGG 1 cut(s) 271
BtgZI GCGATG 1 cut(s) 651
BtrI CACGTC 1 cut(s) 706
BtsCI GGATG 4 cut(s) 574, 613, 741, 874
BtsI GCAGTG 1 cut(s) 845
BtsIMutI CAGTG 2 cut(s) 124, 845
Cac8I GCNNGC 1 cut(s) 684
CfoI GCGC 3 cut(s) 266, 458, 682
Cfr13I GGNCC 3 cut(s) 219, 501, 669
CseI GACGC 2 cut(s) 545, 844
Csp6I GTAC 2 cut(s) 205, 463
CviAII CATG 1 cut(s) 272
CviQI GTAC 2 cut(s) 205, 463
DdeI CTNAG 3 cut(s) 116, 176, 879
DpnI GATC 3 cut(s) 453, 612, 714
DpnII GATC 3 cut(s) 451, 610, 712
EaeI YGGCCR 1 cut(s) 313
EagI CGGCCG 1 cut(s) 313
Eam1104I CTCTTC 3 cut(s) 104, 245, 311
EarI CTCTTC 3 cut(s) 104, 245, 311
EciI GGCGGA 4 cut(s) 290, 313, 362, 581
EclXI CGGCCG 1 cut(s) 313
Eco130I CCWWGG 2 cut(s) 247, 271
Eco147I AGGCCT 1 cut(s) 252
Eco24I GRGCYC 2 cut(s) 228, 491
Eco47I GGWCC 2 cut(s) 219, 501
Eco52I CGGCCG 1 cut(s) 313
Eco88I CYCGRG 1 cut(s) 491
EcoRII CCWGG 1 cut(s) 473
EcoT14I CCWWGG 2 cut(s) 247, 271
EcoT38I GRGCYC 2 cut(s) 228, 491
ErhI CCWWGG 2 cut(s) 247, 271
Esp3I CGTCTC 3 cut(s) 337, 406, 827
FaeI CATG 1 cut(s) 275
FaiI YATR 3 cut(s) 163, 165, 273
FaqI GGGAC 3 cut(s) 128, 391, 418
FatI CATG 1 cut(s) 271
FauI CCCGC 1 cut(s) 416
FauNDI CATATG 1 cut(s) 163
FbaI TGATCA 1 cut(s) 712
FokI GGATG 4 cut(s) 581, 620, 748, 881
FriOI GRGCYC 2 cut(s) 228, 491
GlaI GCGC 3 cut(s) 265, 457, 681
GsaI CCCAGC 2 cut(s) 358, 439
GsuI CTGGAG 2 cut(s) 457, 505
HaeIII GGCC 4 cut(s) 252, 315, 423, 670
HapII CCGG 3 cut(s) 382, 540, 773
HgaI GACGC 2 cut(s) 545, 844
HhaI GCGC 3 cut(s) 266, 458, 682
Hin1I GRCGYC 2 cut(s) 132, 537
Hin1II CATG 1 cut(s) 275
Hin6I GCGC 3 cut(s) 264, 456, 680
HinP1I GCGC 3 cut(s) 264, 456, 680
HpaII CCGG 3 cut(s) 382, 540, 773
HphI GGTGA 1 cut(s) 655
Hpy166II GTNNAC 1 cut(s) 504
Hpy188I TCNGA 9 cut(s) 364, 395, 550, 579, 585, 607, 735, 769, 882
Hpy188III TCNNGA 8 cut(s) 217, 382, 449, 484, 614, 701, 832, 899
Hpy8I GTNNAC 1 cut(s) 504
Hpy99I CGWCG 5 cut(s) 134, 137, 233, 539, 655
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4IV ACGT 2 cut(s) 132, 705
HpyCH4V TGCA 2 cut(s) 4, 821
HpyF10VI GCNNNNNNNGC 7 cut(s) 232, 417, 426, 495, 683, 686, 844
HpyF3I CTNAG 3 cut(s) 116, 176, 879
HpySE526I ACGT 2 cut(s) 132, 705
Hsp92I GRCGYC 2 cut(s) 132, 537
Hsp92II CATG 1 cut(s) 275
HspAI GCGC 3 cut(s) 264, 456, 680
Kpn2I TCCGGA 1 cut(s) 381
Ksp22I TGATCA 1 cut(s) 712
Kzo9I GATC 3 cut(s) 451, 610, 712
LmnI GCTCC 4 cut(s) 52, 375, 486, 852
Lsp1109I GCAGC 4 cut(s) 16, 19, 664, 856
LweI GCATC 1 cut(s) 726
MaeII ACGT 2 cut(s) 132, 705
MaeIII GTNAC 2 cut(s) 119, 518
MalI GATC 3 cut(s) 453, 612, 714
MboI GATC 3 cut(s) 451, 610, 712
MboII GAAGA 7 cut(s) 91, 232, 298, 658, 792, 826, 914
MhlI GDGCHC 3 cut(s) 228, 491, 762
MluCI AATT 2 cut(s) 553, 863
MlyI GAGTC 6 cut(s) 67, 222, 405, 440, 554, 899
MmeI TCCRAC 1 cut(s) 874
MroI TCCGGA 1 cut(s) 381
MroXI GAANNNNTTC 1 cut(s) 389
MseI TTAA 2 cut(s) 80, 201
MspI CCGG 3 cut(s) 382, 540, 773
MspR9I CCNGG 2 cut(s) 475, 773
MvaI CCWGG 1 cut(s) 475
MvnI CGCG 2 cut(s) 420, 456
MwoI GCNNNNNNNGC 7 cut(s) 232, 417, 426, 495, 683, 686, 844
NciI CCSGG 1 cut(s) 773
NcoI CCATGG 1 cut(s) 271
NdeI CATATG 1 cut(s) 163
NdeII GATC 3 cut(s) 451, 610, 712
NlaIII CATG 1 cut(s) 275
NlaIV GGNNCC 1 cut(s) 488
NmuCI GTSAC 1 cut(s) 119
NspV TTCGAA 1 cut(s) 803
PceI AGGCCT 1 cut(s) 252
PcsI WCGNNNNNNNCGW 2 cut(s) 138, 800
PdmI GAANNNNTTC 1 cut(s) 389
PfeI GAWTC 4 cut(s) 158, 574, 580, 910
PflFI GACNNNGTC 1 cut(s) 134
PfoI TCCNGGA 1 cut(s) 473
Ple19I CGATCG 1 cut(s) 454
PleI GAGTC 6 cut(s) 67, 221, 404, 439, 553, 899
PpsI GAGTC 6 cut(s) 67, 221, 404, 439, 553, 899
Psp6I CCWGG 1 cut(s) 473
PspFI CCCAGC 2 cut(s) 354, 435
PspGI CCWGG 1 cut(s) 473
PspN4I GGNNCC 1 cut(s) 488
PspPI GGNCC 3 cut(s) 219, 501, 669
PsyI GACNNNGTC 1 cut(s) 134
PvuI CGATCG 1 cut(s) 454
RsaI GTAC 2 cut(s) 206, 464
RsaNI GTAC 2 cut(s) 205, 463
SaqAI TTAA 2 cut(s) 80, 201
Sau3AI GATC 3 cut(s) 451, 610, 712
Sau96I GGNCC 3 cut(s) 219, 501, 669
SchI GAGTC 6 cut(s) 67, 222, 405, 440, 554, 899
ScrFI CCNGG 2 cut(s) 475, 773
SduI GDGCHC 3 cut(s) 228, 491, 762
SfaNI GCATC 1 cut(s) 726
SfuI TTCGAA 1 cut(s) 803
SinI GGWCC 2 cut(s) 219, 501
Sse9I AATT 2 cut(s) 553, 863
SseBI AGGCCT 1 cut(s) 252
StuI AGGCCT 1 cut(s) 252
StyD4I CCNGG 2 cut(s) 473, 771
StyI CCWWGG 2 cut(s) 247, 271
TaaI ACNGT 1 cut(s) 331
TaiI ACGT 2 cut(s) 135, 708
TaqI TCGA 7 cut(s) 258, 615, 621, 803, 831, 900, 908
TaqII GACCGA 1 cut(s) 236
TasI AATT 2 cut(s) 553, 863
TauI GCSGC 7 cut(s) 318, 378, 423, 563, 566, 636, 689
TfiI GAWTC 4 cut(s) 158, 574, 580, 910
Tru1I TTAA 2 cut(s) 80, 201
Tru9I TTAA 2 cut(s) 80, 201
TscAI CASTG 2 cut(s) 124, 845
TseFI GTSAC 1 cut(s) 119
TseI GCWGC 4 cut(s) 4, 7, 677, 844
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 1 cut(s) 150
TspRI CASTG 2 cut(s) 124, 845
Tth111I GACNNNGTC 1 cut(s) 134
VpaK11BI GGWCC 2 cut(s) 219, 501
XcmI CCANNNNNNNNNTGG 1 cut(s) 679
XmnI GAANNNNTTC 1 cut(s) 389
ZraI GACGTC 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.