MD09G1264200.v1.1

Protein of unknown function, DUF573

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0024302
Physical Location & Seq
Reverse (-)
33722756 .. 33724266
1511 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1264200.v1.1.491

Sequence Viewer

Length: 1020 bp
ATGGACTCCACCCCTACCCCTACCCCTACCCCTACCTTTCTTCGCCATTCCCAATCCCAATGCAGCAGCCCACTCCTCTACCCTCCACCCTCCTCCGCTACCAAGCTCCCCATCAAACGCAAAAACCCCGACTCCATTAACCCTAACCCTAACCTCTTCTCTCCCCAACTCCTCAGTGACTTCAACGACGTCGTCCTCGTCCCAACCCCACCAGATTCATATGCCCAAACCCTCAGCACCGCCAGAACGCCCCCGTTTAAGTACCACCGAGTCTGGACCGAGCCCGACGAGCTTCTCTTCCTCCAAGGCCTCCTCGACTGCGCCTCCCATGGTGGCTTCTCCTTCCCCAAAGACCTCCGCCTCTTCTACGGCCGCTTCTCCGCCACCGTCTCTCACTCCTACACCAAATCCCAGCTCTCCGAGAAGCTCCGCCGCCTCCGGAAAAAGTTCCGAGTCGTCTCGTCCCGCCTCACTCGCGGCCTCTGCGAGTCCCAGCTCTCGCCTCACGATCGCGCCCTGTACGACCTCTCCAGGAAGCTCTGGAGCCCCGAGTGCTGGTCCACTTCCCCGTTCGGTAACAGAGAAAAGAGCGACGCCGGAGAGTCTGATAATTTGGCGGCGGCGGATGAGAATCTGAATCAGAATAAGAACCAGAGCGTTTCGGATGATCTCGATGTCGAAAATGATAGCGGCGATGAGGTGAAGACGACGAGCGAGTTGGCACGGCCCATTGCTGCGCTGGCGGCGAATAGTGTTCTGGACGTGTTTGATCAGTCTCTCAATGAGGTTCGGATGCTTCTTGTTCAACAGGGTGTGCTCTGTTCTGACCCGGTTCGTTTGGCTTCGGGTTCGGGTTCTTCGAATGAGGGGAAGACTGCAATGGACTTCGAGACGCAGTGGCAGCTCCAACGCCTTGCTGAATTGGATGTGTTGGCTCAGAGATTGAGGTTGGTTCTCGAAGACTCGAATCGATATCACGAGGGCGAGCCTTGGCGCAACAGAAAGGTTGCTCCTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF573

Protein Analysis

340

Amino Acids

37.96

Weight (kDa)

6.12

Isoelectric Point (pI)

51.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GeBP-like_DBD PF04504 89 - 182 8.3e-22 Glabrous-enhancer-binding protein-like family, DBD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024302)

Species Orthologous Gene IDs
malus_domestica MD05G1034900.v1.1 MD09G1264200.v1.1
prunus_persica Prupe.3G161700_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 192
AccII CGCG 2 cut(s) 477, 513
AccIII TCCGGA 1 cut(s) 438
AcoI YGGCCR 1 cut(s) 370
AcyI GRCGYC 2 cut(s) 189, 594
AfaI GTAC 2 cut(s) 263, 521
AfiI CCNNNNNNNGG 1 cut(s) 555
AflIII ACRYGT 1 cut(s) 762
AgsI TTSAA 2 cut(s) 184, 806
AjiI CACGTC 1 cut(s) 763
AjnI CCWGG 1 cut(s) 530
AluBI AGCT 7 cut(s) 106, 292, 415, 427, 496, 538, 904
AluI AGCT 7 cut(s) 106, 292, 415, 427, 496, 538, 904
Alw21I GWGCWC 1 cut(s) 819
Alw26I GTCTC 4 cut(s) 394, 463, 780, 884
Ama87I CYCGRG 1 cut(s) 548
Aor13HI TCCGGA 1 cut(s) 438
AoxI GGCC 4 cut(s) 307, 370, 478, 725
ApeKI GCWGC 4 cut(s) 63, 66, 734, 901
Asp700I GAANNNNTTC 1 cut(s) 446
AspLEI GCGC 4 cut(s) 323, 515, 739, 996
AspS9I GGNCC 3 cut(s) 276, 558, 726
AsuC2I CCSGG 1 cut(s) 830
AsuHPI GGTGA 1 cut(s) 712
AsuII TTCGAA 1 cut(s) 860
AvaI CYCGRG 1 cut(s) 548
AvaII GGWCC 2 cut(s) 276, 558
BanII GRGCYC 2 cut(s) 285, 548
BauI CACGAG 1 cut(s) 977
BbsI GAAGAC 3 cut(s) 710, 878, 966
Bbv12I GWGCWC 1 cut(s) 819
BbvCI CCTCAGC 1 cut(s) 233
BbvI GCAGC 4 cut(s) 75, 78, 721, 913
BccI CCATC 1 cut(s) 119
BceAI ACGGC 2 cut(s) 385, 740
BciT130I CCWGG 1 cut(s) 532
BclI TGATCA 1 cut(s) 769
BcnI CCSGG 1 cut(s) 830
BcoDI GTCTC 4 cut(s) 394, 463, 780, 884
Bme1390I CCNGG 2 cut(s) 532, 830
Bme18I GGWCC 2 cut(s) 276, 558
BmeT110I CYCGRG 1 cut(s) 548
BmgBI CACGTC 1 cut(s) 763
BmgT120I GGNCC 3 cut(s) 276, 558, 726
BmiI GGNNCC 1 cut(s) 545
BmrFI CCNGG 2 cut(s) 532, 830
BmsI GCATC 1 cut(s) 783
BpiI GAAGAC 3 cut(s) 710, 878, 966
BpmI CTGGAG 2 cut(s) 514, 562
Bpu10I CCTNAGC 1 cut(s) 233
Bpu14I TTCGAA 1 cut(s) 860
BpuMI CCSGG 1 cut(s) 830
Bsa29I ATCGAT 1 cut(s) 970
BsaBI GATNNNNATC 1 cut(s) 630
BsaHI GRCGYC 2 cut(s) 189, 594
BsaJI CCNNGG 3 cut(s) 304, 328, 989
BsaWI WCCGGW 1 cut(s) 438
BsaXI ACNNNNNCTCC 6 cut(s) 116, 146, 308, 338, 512, 542
Bsc4I CCNNNNNNNGG 1 cut(s) 555
Bse3DI GCAATG 2 cut(s) 729, 885
Bse8I GATNNNNATC 1 cut(s) 630
BseAI TCCGGA 1 cut(s) 438
BseBI CCWGG 1 cut(s) 532
BseCI ATCGAT 1 cut(s) 970
BseDI CCNNGG 3 cut(s) 304, 328, 989
BseGI GGATG 4 cut(s) 631, 670, 798, 931
BseJI GATNNNNATC 1 cut(s) 630
BseLI CCNNNNNNNGG 1 cut(s) 555
BseMI GCAATG 2 cut(s) 729, 885
BseMII CTCAG 3 cut(s) 187, 247, 950
BseRI GAGGAG 4 cut(s) 65, 82, 161, 302
BseX3I CGGCCG 1 cut(s) 370
BseXI GCAGC 4 cut(s) 75, 78, 721, 913
BseYI CCCAGC 2 cut(s) 411, 492
Bsh1236I CGCG 2 cut(s) 477, 513
Bsh1285I CGRYCG 2 cut(s) 373, 511
BshFI GGCC 4 cut(s) 309, 372, 480, 727
BshVI ATCGAT 1 cut(s) 970
BsiEI CGRYCG 2 cut(s) 373, 511
BsiHKAI GWGCWC 1 cut(s) 819
BsiHKCI CYCGRG 1 cut(s) 548
BsiSI CCGG 3 cut(s) 439, 597, 830
BslFI GGGAC 3 cut(s) 185, 448, 475
BslI CCNNNNNNNGG 1 cut(s) 555
BsmAI GTCTC 4 cut(s) 394, 463, 780, 884
BsmBI CGTCTC 3 cut(s) 394, 463, 884
BsmFI GGGAC 3 cut(s) 185, 448, 475
BsnI GGCC 4 cut(s) 309, 372, 480, 727
BsoBI CYCGRG 1 cut(s) 548
Bsp119I TTCGAA 1 cut(s) 860
Bsp1286I GDGCHC 3 cut(s) 285, 548, 819
Bsp13I TCCGGA 1 cut(s) 438
Bsp143I GATC 3 cut(s) 508, 667, 769
Bsp19I CCATGG 1 cut(s) 328
BspANI GGCC 4 cut(s) 309, 372, 480, 727
BspCNI CTCAG 3 cut(s) 186, 246, 949
BspDI ATCGAT 1 cut(s) 970
BspEI TCCGGA 1 cut(s) 438
BspFNI CGCG 2 cut(s) 477, 513
BspLI GGNNCC 1 cut(s) 545
BspT104I TTCGAA 1 cut(s) 860
BsrDI GCAATG 2 cut(s) 729, 885
BssECI CCNNGG 3 cut(s) 304, 328, 989
BssMI GATC 3 cut(s) 508, 667, 769
BssNI GRCGYC 2 cut(s) 189, 594
BssSI CACGAG 1 cut(s) 977
BssT1I CCWWGG 3 cut(s) 304, 328, 989
Bst2BI CACGAG 1 cut(s) 977
Bst2UI CCWGG 1 cut(s) 532
Bst4CI ACNGT 1 cut(s) 388
Bst6I CTCTTC 3 cut(s) 161, 302, 368
BstACI GRCGYC 2 cut(s) 189, 594
BstBI TTCGAA 1 cut(s) 860
BstC8I GCNNGC 2 cut(s) 741, 986
BstDEI CTNAG 3 cut(s) 173, 233, 936
BstDSI CCRYGG 1 cut(s) 328
BstF5I GGATG 4 cut(s) 631, 670, 798, 931
BstFNI CGCG 2 cut(s) 477, 513
BstHHI GCGC 4 cut(s) 323, 515, 739, 996
BstKTI GATC 3 cut(s) 511, 670, 772
BstMAI GTCTC 4 cut(s) 394, 463, 780, 884
BstMBI GATC 3 cut(s) 508, 667, 769
BstMCI CGRYCG 2 cut(s) 373, 511
BstMWI GCNNNNNNNGC 7 cut(s) 289, 474, 483, 552, 740, 743, 901
BstNI CCWGG 1 cut(s) 532
BstSCI CCNGG 2 cut(s) 530, 828
BstUI CGCG 2 cut(s) 477, 513
BstV1I GCAGC 4 cut(s) 75, 78, 721, 913
BstV2I GAAGAC 3 cut(s) 710, 878, 966
BstZI CGGCCG 1 cut(s) 370
Bsu15I ATCGAT 1 cut(s) 970
BsuRI GGCC 4 cut(s) 309, 372, 480, 727
BsuTUI ATCGAT 1 cut(s) 970
BtgI CCRYGG 1 cut(s) 328
BtgZI GCGATG 1 cut(s) 708
BtrI CACGTC 1 cut(s) 763
BtsCI GGATG 4 cut(s) 631, 670, 798, 931
BtsI GCAGTG 1 cut(s) 902
BtsIMutI CAGTG 2 cut(s) 181, 902
Cac8I GCNNGC 2 cut(s) 741, 986
CfoI GCGC 4 cut(s) 323, 515, 739, 996
Cfr13I GGNCC 3 cut(s) 276, 558, 726
ClaI ATCGAT 1 cut(s) 970
CseI GACGC 2 cut(s) 602, 901
Csp6I GTAC 2 cut(s) 262, 520
CviAII CATG 1 cut(s) 329
CviQI GTAC 2 cut(s) 262, 520
DdeI CTNAG 3 cut(s) 173, 233, 936
DpnI GATC 3 cut(s) 510, 669, 771
DpnII GATC 3 cut(s) 508, 667, 769
EaeI YGGCCR 1 cut(s) 370
EagI CGGCCG 1 cut(s) 370
Eam1104I CTCTTC 3 cut(s) 161, 302, 368
EarI CTCTTC 3 cut(s) 161, 302, 368
EciI GGCGGA 4 cut(s) 347, 370, 419, 638
EclXI CGGCCG 1 cut(s) 370
Eco130I CCWWGG 3 cut(s) 304, 328, 989
Eco147I AGGCCT 1 cut(s) 309
Eco24I GRGCYC 2 cut(s) 285, 548
Eco32I GATATC 1 cut(s) 974
Eco47I GGWCC 2 cut(s) 276, 558
Eco52I CGGCCG 1 cut(s) 370
Eco88I CYCGRG 1 cut(s) 548
EcoRII CCWGG 1 cut(s) 530
EcoRV GATATC 1 cut(s) 974
EcoT14I CCWWGG 3 cut(s) 304, 328, 989
EcoT38I GRGCYC 2 cut(s) 285, 548
ErhI CCWWGG 3 cut(s) 304, 328, 989
Esp3I CGTCTC 3 cut(s) 394, 463, 884
FaeI CATG 1 cut(s) 332
FaiI YATR 3 cut(s) 220, 222, 330
FaqI GGGAC 3 cut(s) 185, 448, 475
FatI CATG 1 cut(s) 328
FauI CCCGC 1 cut(s) 473
FauNDI CATATG 1 cut(s) 220
FbaI TGATCA 1 cut(s) 769
FokI GGATG 4 cut(s) 638, 677, 805, 938
FriOI GRGCYC 2 cut(s) 285, 548
GlaI GCGC 4 cut(s) 322, 514, 738, 995
GsaI CCCAGC 2 cut(s) 415, 496
GsuI CTGGAG 2 cut(s) 514, 562
HaeIII GGCC 4 cut(s) 309, 372, 480, 727
HapII CCGG 3 cut(s) 439, 597, 830
HgaI GACGC 2 cut(s) 602, 901
HhaI GCGC 4 cut(s) 323, 515, 739, 996
Hin1I GRCGYC 2 cut(s) 189, 594
Hin1II CATG 1 cut(s) 332
Hin6I GCGC 4 cut(s) 321, 513, 737, 994
HinP1I GCGC 4 cut(s) 321, 513, 737, 994
HpaII CCGG 3 cut(s) 439, 597, 830
HphI GGTGA 1 cut(s) 712
Hpy166II GTNNAC 1 cut(s) 561
Hpy188I TCNGA 9 cut(s) 421, 452, 607, 636, 642, 664, 792, 826, 939
Hpy188III TCNNGA 9 cut(s) 274, 439, 506, 541, 671, 758, 889, 956, 977
Hpy8I GTNNAC 1 cut(s) 561
Hpy99I CGWCG 5 cut(s) 191, 194, 290, 596, 712
HpyAV CCTTC 1 cut(s) 352
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4IV ACGT 2 cut(s) 189, 762
HpyCH4V TGCA 2 cut(s) 63, 878
HpyF10VI GCNNNNNNNGC 7 cut(s) 289, 474, 483, 552, 740, 743, 901
HpyF3I CTNAG 3 cut(s) 173, 233, 936
HpySE526I ACGT 2 cut(s) 189, 762
Hsp92I GRCGYC 2 cut(s) 189, 594
Hsp92II CATG 1 cut(s) 332
HspAI GCGC 4 cut(s) 321, 513, 737, 994
Kpn2I TCCGGA 1 cut(s) 438
Ksp22I TGATCA 1 cut(s) 769
Kzo9I GATC 3 cut(s) 508, 667, 769
LmnI GCTCC 5 cut(s) 111, 432, 543, 909, 1015
Lsp1109I GCAGC 4 cut(s) 75, 78, 721, 913
LweI GCATC 1 cut(s) 783
MaeII ACGT 2 cut(s) 189, 762
MaeIII GTNAC 2 cut(s) 176, 575
MalI GATC 3 cut(s) 510, 669, 771
MboI GATC 3 cut(s) 508, 667, 769
MboII GAAGA 8 cut(s) 32, 148, 289, 355, 715, 849, 883, 971
MhlI GDGCHC 3 cut(s) 285, 548, 819
MluCI AATT 2 cut(s) 610, 920
MlyI GAGTC 6 cut(s) 125, 279, 462, 497, 611, 956
MmeI TCCRAC 1 cut(s) 931
MroI TCCGGA 1 cut(s) 438
MroXI GAANNNNTTC 1 cut(s) 446
MseI TTAA 2 cut(s) 138, 258
MspI CCGG 3 cut(s) 439, 597, 830
MspR9I CCNGG 2 cut(s) 532, 830
MvaI CCWGG 1 cut(s) 532
MvnI CGCG 2 cut(s) 477, 513
MwoI GCNNNNNNNGC 7 cut(s) 289, 474, 483, 552, 740, 743, 901
NciI CCSGG 1 cut(s) 830
NcoI CCATGG 1 cut(s) 328
NdeI CATATG 1 cut(s) 220
NdeII GATC 3 cut(s) 508, 667, 769
NlaIII CATG 1 cut(s) 332
NlaIV GGNNCC 1 cut(s) 545
NmuCI GTSAC 1 cut(s) 176
NspV TTCGAA 1 cut(s) 860
PceI AGGCCT 1 cut(s) 309
PcsI WCGNNNNNNNCGW 2 cut(s) 195, 857
PdmI GAANNNNTTC 1 cut(s) 446
PfeI GAWTC 4 cut(s) 215, 631, 637, 967
PflFI GACNNNGTC 1 cut(s) 191
PfoI TCCNGGA 1 cut(s) 530
Ple19I CGATCG 1 cut(s) 511
PleI GAGTC 6 cut(s) 125, 278, 461, 496, 610, 956
PpsI GAGTC 6 cut(s) 125, 278, 461, 496, 610, 956
Psp6I CCWGG 1 cut(s) 530
PspFI CCCAGC 2 cut(s) 411, 492
PspGI CCWGG 1 cut(s) 530
PspN4I GGNNCC 1 cut(s) 545
PspPI GGNCC 3 cut(s) 276, 558, 726
PsyI GACNNNGTC 1 cut(s) 191
PvuI CGATCG 1 cut(s) 511
RsaI GTAC 2 cut(s) 263, 521
RsaNI GTAC 2 cut(s) 262, 520
SaqAI TTAA 2 cut(s) 138, 258
Sau3AI GATC 3 cut(s) 508, 667, 769
Sau96I GGNCC 3 cut(s) 276, 558, 726
SchI GAGTC 6 cut(s) 125, 279, 462, 497, 611, 956
ScrFI CCNGG 2 cut(s) 532, 830
SduI GDGCHC 3 cut(s) 285, 548, 819
SfaNI GCATC 1 cut(s) 783
SfuI TTCGAA 1 cut(s) 860
SinI GGWCC 2 cut(s) 276, 558
Sse9I AATT 2 cut(s) 610, 920
SseBI AGGCCT 1 cut(s) 309
StuI AGGCCT 1 cut(s) 309
StyD4I CCNGG 2 cut(s) 530, 828
StyI CCWWGG 3 cut(s) 304, 328, 989
TaaI ACNGT 1 cut(s) 388
TaiI ACGT 2 cut(s) 192, 765
TaqI TCGA 8 cut(s) 315, 672, 678, 860, 888, 957, 965, 970
TaqII GACCGA 1 cut(s) 293
TasI AATT 2 cut(s) 610, 920
TauI GCSGC 7 cut(s) 375, 435, 480, 620, 623, 693, 746
TfiI GAWTC 4 cut(s) 215, 631, 637, 967
Tru1I TTAA 2 cut(s) 138, 258
Tru9I TTAA 2 cut(s) 138, 258
TscAI CASTG 2 cut(s) 181, 902
TseFI GTSAC 1 cut(s) 176
TseI GCWGC 4 cut(s) 63, 66, 734, 901
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 1 cut(s) 207
TspRI CASTG 2 cut(s) 181, 902
Tth111I GACNNNGTC 1 cut(s) 191
VpaK11BI GGWCC 2 cut(s) 276, 558
XcmI CCANNNNNNNNNTGG 1 cut(s) 736
XmnI GAANNNNTTC 1 cut(s) 446
ZraI GACGTC 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.