Prupe.3G161700_v2.0.a1

Protein of unknown function, DUF573

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0024302
Physical Location & Seq
Reverse (-)
18073582 .. 18078536
4955 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G161700.1

Sequence Viewer

Length: 894 bp
ATGGACTCAATTAAACCGTCCTTCGCTACTAAGCTCCCCATTAAACGCAAAAACCCCGATCCCATCCCCAACCTTAACCCTAACCCTAATCTTCTACCCCCCACCCTCGAATCCACCGCCATATACGACTACAACGCCGTCGGTTTTTCCGGAGAAGATGGGCAGAGAATCCCGCCGTTCAAGTACCACCGAATCTGGACCGAACCCGACGAGCTTCTCTTCCTCCAAGGCCTCCTTGACTGCGCCTCAGATAGCTTCTCGTTCCCCAAAGACCTTCACCTCTTCTACGCTCGATTCTCCACCACCGTGTCTCAGCACTACACCAAATCCCAGCTCTCTGAGAAGCTCCGCCGCTTCCGGAAAAAGTTCCGAGTCGTCTCGGCTCGGCTCGCTCGCGGCCTCCACGAGTCGCAGCTTTCGCCGCATGATCGCGCCTTGTACGACCTCTCGAGGAAGCTTTGGAGCTCCGAGTGCTGGTCCACTTCGCCTTTTGGTAACAAAGCCAAGAGCGACGAGGGTGATGATAATTTAATGGTGAATCAGAATCAGAGTGTTTTGGATGATCTTTTTGTGGAAAATGATTATGGCGATGACGTGAAGATCAATTTGTCTAGGGCCATTGCTGGGCAGGCGGCGAAGACTGTTTTGGACGTGTTCGATCAGTCTTTGAATGAGGTTCGGAGGGTTCTTGTTCAACGTTGTCTGCTCTGCTCCGACCATGTTGGTTCGGTCTCGGGCTCAGGCTCTGGCTTTGGCTCTGGCTCATGTTCCTCCAATAAGGGCAAGACTGCACTGGACTTCGAGCAGCAATGGCAGCTCCAACGGCTTGCTGAGTTGGATGTATTGTCTCAGAGATTGAGGTTGGTTCTCGACAACACCATTCGGGGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF573

Protein Analysis

298

Amino Acids

33.46

Weight (kDa)

7.65

Isoelectric Point (pI)

45.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024302)

Species Orthologous Gene IDs
malus_domestica MD05G1034900.v1.1 MD09G1264200.v1.1
prunus_persica Prupe.3G161700_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 396, 432
AccIII TCCGGA 2 cut(s) 149, 357
AciI CCGC 7 cut(s) 117, 173, 349, 352, 396, 422, 632
AclI AACGTT 1 cut(s) 697
AclWI GGATC 1 cut(s) 53
AfaI GTAC 2 cut(s) 185, 440
AfiI CCNNNNNNNGG 2 cut(s) 474, 624
AflIII ACRYGT 1 cut(s) 651
AgsI TTSAA 3 cut(s) 181, 670, 695
AjiI CACGTC 2 cut(s) 595, 652
AjuI GAANNNNNNNTTGG 2 cut(s) 629, 661
AleI CACNNNNGTG 1 cut(s) 305
AluBI AGCT 9 cut(s) 34, 214, 255, 334, 346, 415, 457, 465, 817
AluI AGCT 9 cut(s) 34, 214, 255, 334, 346, 415, 457, 465, 817
Alw21I GWGCWC 1 cut(s) 467
Alw26I GTCTC 4 cut(s) 315, 382, 736, 852
AlwI GGATC 1 cut(s) 53
AlwNI CAGNNNCTG 1 cut(s) 746
Ama87I CYCGRG 2 cut(s) 448, 733
Aor13HI TCCGGA 2 cut(s) 149, 357
AoxI GGCC 4 cut(s) 229, 397, 615, 886
ApeKI GCWGC 3 cut(s) 412, 805, 814
Asp700I GAANNNNTTC 1 cut(s) 365
AspLEI GCGC 2 cut(s) 245, 434
AspS9I GGNCC 4 cut(s) 198, 477, 615, 886
AsuHPI GGTGA 3 cut(s) 269, 530, 547
AvaI CYCGRG 2 cut(s) 448, 733
AvaII GGWCC 2 cut(s) 198, 477
BanII GRGCYC 2 cut(s) 467, 740
BauI CACGAG 1 cut(s) 404
BbsI GAAGAC 1 cut(s) 644
Bbv12I GWGCWC 1 cut(s) 467
BbvI GCAGC 3 cut(s) 424, 817, 826
BccI CCATC 2 cut(s) 71, 152
BceAI ACGGC 3 cut(s) 122, 160, 839
BcoDI GTCTC 4 cut(s) 315, 382, 736, 852
BfaI CTAG 1 cut(s) 612
BisI GCNGC 7 cut(s) 352, 397, 413, 422, 633, 806, 815
BlsI GCNGC 7 cut(s) 353, 398, 414, 423, 634, 807, 816
Bme18I GGWCC 2 cut(s) 198, 477
BmeT110I CYCGRG 2 cut(s) 448, 733
BmgBI CACGTC 2 cut(s) 595, 652
BmgT120I GGNCC 4 cut(s) 198, 477, 615, 886
BmiI GGNNCC 1 cut(s) 887
BpiI GAAGAC 1 cut(s) 644
Bpu10I CCTNAGC 1 cut(s) 739
BsaI GGTCTC 1 cut(s) 736
BsaJI CCNNGG 1 cut(s) 226
BsaWI WCCGGW 2 cut(s) 149, 357
Bsc4I CCNNNNNNNGG 2 cut(s) 474, 624
Bse1I ACTGG 1 cut(s) 798
Bse3DI GCAATG 2 cut(s) 618, 815
BseAI TCCGGA 2 cut(s) 149, 357
BseDI CCNNGG 1 cut(s) 226
BseGI GGATG 3 cut(s) 63, 565, 844
BseLI CCNNNNNNNGG 2 cut(s) 474, 624
BseMI GCAATG 2 cut(s) 618, 815
BseMII CTCAG 6 cut(s) 261, 326, 330, 753, 822, 863
BseNI ACTGG 1 cut(s) 798
BseXI GCAGC 3 cut(s) 424, 817, 826
BseYI CCCAGC 2 cut(s) 330, 623
BsgI GTGCAG 1 cut(s) 774
Bsh1236I CGCG 2 cut(s) 396, 432
BshFI GGCC 4 cut(s) 231, 399, 617, 888
BsiHKAI GWGCWC 1 cut(s) 467
BsiHKCI CYCGRG 2 cut(s) 448, 733
BsiSI CCGG 2 cut(s) 150, 358
BslI CCNNNNNNNGG 2 cut(s) 474, 624
BsmAI GTCTC 4 cut(s) 315, 382, 736, 852
BsmBI CGTCTC 1 cut(s) 382
BsnI GGCC 4 cut(s) 231, 399, 617, 888
Bso31I GGTCTC 1 cut(s) 736
BsoBI CYCGRG 2 cut(s) 448, 733
Bsp1286I GDGCHC 2 cut(s) 467, 740
Bsp13I TCCGGA 2 cut(s) 149, 357
Bsp143I GATC 5 cut(s) 58, 427, 562, 600, 658
BspACI CCGC 7 cut(s) 117, 173, 349, 352, 396, 422, 632
BspANI GGCC 4 cut(s) 231, 399, 617, 888
BspCNI CTCAG 6 cut(s) 260, 325, 331, 752, 823, 862
BspEI TCCGGA 2 cut(s) 149, 357
BspFNI CGCG 2 cut(s) 396, 432
BspLI GGNNCC 1 cut(s) 887
BspPI GGATC 1 cut(s) 53
BspTNI GGTCTC 1 cut(s) 736
BsrDI GCAATG 2 cut(s) 618, 815
BsrI ACTGG 1 cut(s) 798
BssECI CCNNGG 1 cut(s) 226
BssMI GATC 5 cut(s) 58, 427, 562, 600, 658
BssSI CACGAG 1 cut(s) 404
BssT1I CCWWGG 1 cut(s) 226
Bst2BI CACGAG 1 cut(s) 404
Bst4CI ACNGT 3 cut(s) 18, 307, 643
Bst6I CTCTTC 2 cut(s) 224, 287
BstC8I GCNNGC 4 cut(s) 390, 394, 630, 828
BstDEI CTNAG 7 cut(s) 30, 247, 312, 339, 739, 831, 849
BstF5I GGATG 3 cut(s) 63, 565, 844
BstFNI CGCG 2 cut(s) 396, 432
BstHHI GCGC 2 cut(s) 245, 434
BstKTI GATC 5 cut(s) 61, 430, 565, 603, 661
BstMAI GTCTC 4 cut(s) 315, 382, 736, 852
BstMBI GATC 5 cut(s) 58, 427, 562, 600, 658
BstMWI GCNNNNNNNGC 8 cut(s) 389, 418, 421, 471, 629, 811, 814, 823
BstUI CGCG 2 cut(s) 396, 432
BstV1I GCAGC 3 cut(s) 424, 817, 826
BstV2I GAAGAC 1 cut(s) 644
BsuRI GGCC 4 cut(s) 231, 399, 617, 888
BtgZI GCGATG 1 cut(s) 603
BtrI CACGTC 2 cut(s) 595, 652
BtsCI GGATG 3 cut(s) 63, 565, 844
BtsIMutI CAGTG 1 cut(s) 791
Cac8I GCNNGC 4 cut(s) 390, 394, 630, 828
CaiI CAGNNNCTG 1 cut(s) 746
CfoI GCGC 2 cut(s) 245, 434
Cfr13I GGNCC 4 cut(s) 198, 477, 615, 886
Csp6I GTAC 2 cut(s) 184, 439
CviAII CATG 3 cut(s) 425, 719, 765
CviQI GTAC 2 cut(s) 184, 439
DdeI CTNAG 7 cut(s) 30, 247, 312, 339, 739, 831, 849
DpnI GATC 5 cut(s) 60, 429, 564, 602, 660
DpnII GATC 5 cut(s) 58, 427, 562, 600, 658
Eam1104I CTCTTC 2 cut(s) 224, 287
EarI CTCTTC 2 cut(s) 224, 287
EciI GGCGGA 1 cut(s) 338
Ecl136II GAGCTC 1 cut(s) 465
Eco130I CCWWGG 1 cut(s) 226
Eco147I AGGCCT 1 cut(s) 231
Eco24I GRGCYC 2 cut(s) 467, 740
Eco31I GGTCTC 1 cut(s) 736
Eco47I GGWCC 2 cut(s) 198, 477
Eco53kI GAGCTC 1 cut(s) 465
Eco88I CYCGRG 2 cut(s) 448, 733
EcoICRI GAGCTC 1 cut(s) 465
EcoT14I CCWWGG 1 cut(s) 226
EcoT38I GRGCYC 2 cut(s) 467, 740
ErhI CCWWGG 1 cut(s) 226
Esp3I CGTCTC 1 cut(s) 382
FaeI CATG 3 cut(s) 428, 722, 768
FaiI YATR 6 cut(s) 122, 124, 426, 585, 720, 766
FalI AAGNNNNNCTT 2 cut(s) 219, 251
FatI CATG 3 cut(s) 424, 718, 764
FauI CCCGC 1 cut(s) 180
Fnu4HI GCNGC 7 cut(s) 352, 397, 413, 422, 633, 806, 815
FokI GGATG 3 cut(s) 50, 572, 851
FriOI GRGCYC 2 cut(s) 467, 740
Fsp4HI GCNGC 7 cut(s) 352, 397, 413, 422, 633, 806, 815
FspBI CTAG 1 cut(s) 612
GlaI GCGC 2 cut(s) 244, 433
GluI GCNGC 7 cut(s) 352, 397, 413, 422, 633, 806, 815
GsaI CCCAGC 2 cut(s) 334, 627
HaeIII GGCC 4 cut(s) 231, 399, 617, 888
HapII CCGG 2 cut(s) 150, 358
HhaI GCGC 2 cut(s) 245, 434
Hin1II CATG 3 cut(s) 428, 722, 768
Hin6I GCGC 2 cut(s) 243, 432
HinP1I GCGC 2 cut(s) 243, 432
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 9 cut(s) 5, 110, 168, 192, 294, 372, 407, 538, 544
HpaII CCGG 2 cut(s) 150, 358
HphI GGTGA 3 cut(s) 269, 530, 547
Hpy166II GTNNAC 1 cut(s) 480
Hpy188I TCNGA 9 cut(s) 250, 340, 371, 469, 543, 549, 681, 715, 852
Hpy188III TCNNGA 5 cut(s) 150, 196, 358, 448, 869
Hpy8I GTNNAC 1 cut(s) 480
Hpy99I CGWCG 3 cut(s) 143, 212, 515
HpyAV CCTTC 2 cut(s) 31, 284
HpyCH4III ACNGT 3 cut(s) 18, 307, 643
HpyCH4IV ACGT 3 cut(s) 594, 651, 697
HpyCH4V TGCA 1 cut(s) 791
HpyF10VI GCNNNNNNNGC 8 cut(s) 389, 418, 421, 471, 629, 811, 814, 823
HpyF3I CTNAG 7 cut(s) 30, 247, 312, 339, 739, 831, 849
HpySE526I ACGT 3 cut(s) 594, 651, 697
Hsp92II CATG 3 cut(s) 428, 722, 768
HspAI GCGC 2 cut(s) 243, 432
Kpn2I TCCGGA 2 cut(s) 149, 357
Kzo9I GATC 5 cut(s) 58, 427, 562, 600, 658
LmnI GCTCC 6 cut(s) 39, 351, 462, 470, 716, 822
Lsp1109I GCAGC 3 cut(s) 424, 817, 826
MaeI CTAG 1 cut(s) 612
MaeII ACGT 3 cut(s) 594, 651, 697
MaeIII GTNAC 1 cut(s) 494
MalI GATC 5 cut(s) 60, 429, 564, 602, 660
MboI GATC 5 cut(s) 58, 427, 562, 600, 658
MboII GAAGA 6 cut(s) 83, 167, 211, 274, 610, 649
MhlI GDGCHC 2 cut(s) 467, 740
MluCI AATT 3 cut(s) 9, 526, 604
MlyI GAGTC 2 cut(s) 381, 416
MmeI TCCRAC 3 cut(s) 738, 816, 844
MroI TCCGGA 2 cut(s) 149, 357
MroXI GAANNNNTTC 1 cut(s) 365
MseI TTAA 4 cut(s) 12, 42, 75, 530
MslI CAYNNNNRTG 1 cut(s) 305
MspI CCGG 2 cut(s) 150, 358
MvnI CGCG 2 cut(s) 396, 432
MwoI GCNNNNNNNGC 8 cut(s) 389, 418, 421, 471, 629, 811, 814, 823
NdeII GATC 5 cut(s) 58, 427, 562, 600, 658
NlaIII CATG 3 cut(s) 428, 722, 768
NlaIV GGNNCC 1 cut(s) 887
NmeAIII GCCGAG 2 cut(s) 359, 364
OliI CACNNNNGTG 1 cut(s) 305
PaeR7I CTCGAG 1 cut(s) 448
PceI AGGCCT 1 cut(s) 231
PdmI GAANNNNTTC 1 cut(s) 365
PfeI GAWTC 6 cut(s) 110, 168, 192, 294, 538, 544
PkrI GCNGC 7 cut(s) 353, 398, 414, 423, 634, 807, 816
PleI GAGTC 2 cut(s) 380, 415
PpsI GAGTC 2 cut(s) 380, 415
Psp124BI GAGCTC 1 cut(s) 467
Psp1406I AACGTT 1 cut(s) 697
PspFI CCCAGC 2 cut(s) 330, 623
PspN4I GGNNCC 1 cut(s) 887
PspPI GGNCC 4 cut(s) 198, 477, 615, 886
PstNI CAGNNNCTG 1 cut(s) 746
RsaI GTAC 2 cut(s) 185, 440
RsaNI GTAC 2 cut(s) 184, 439
RseI CAYNNNNRTG 1 cut(s) 305
SacI GAGCTC 1 cut(s) 467
SaqAI TTAA 4 cut(s) 12, 42, 75, 530
SatI GCNGC 7 cut(s) 352, 397, 413, 422, 633, 806, 815
Sau3AI GATC 5 cut(s) 58, 427, 562, 600, 658
Sau96I GGNCC 4 cut(s) 198, 477, 615, 886
SchI GAGTC 2 cut(s) 381, 416
SduI GDGCHC 2 cut(s) 467, 740
Sfr274I CTCGAG 1 cut(s) 448
SinI GGWCC 2 cut(s) 198, 477
SlaI CTCGAG 1 cut(s) 448
SmiMI CAYNNNNRTG 1 cut(s) 305
SmlI CTYRAG 1 cut(s) 448
SmoI CTYRAG 1 cut(s) 448
Sse9I AATT 3 cut(s) 9, 526, 604
SseBI AGGCCT 1 cut(s) 231
SsiI CCGC 7 cut(s) 117, 173, 349, 352, 396, 422, 632
SspMI CTAG 1 cut(s) 612
SstI GAGCTC 1 cut(s) 467
StuI AGGCCT 1 cut(s) 231
StyI CCWWGG 1 cut(s) 226
TaaI ACNGT 3 cut(s) 18, 307, 643
TaiI ACGT 3 cut(s) 597, 654, 700
TaqI TCGA 6 cut(s) 108, 292, 449, 657, 801, 870
TaqII GACCGA 2 cut(s) 215, 718
TasI AATT 3 cut(s) 9, 526, 604
TauI GCSGC 4 cut(s) 354, 399, 424, 635
TfiI GAWTC 6 cut(s) 110, 168, 192, 294, 538, 544
Tru1I TTAA 4 cut(s) 12, 42, 75, 530
Tru9I TTAA 4 cut(s) 12, 42, 75, 530
TscAI CASTG 1 cut(s) 798
TseI GCWGC 3 cut(s) 412, 805, 814
TspRI CASTG 1 cut(s) 798
VpaK11BI GGWCC 2 cut(s) 198, 477
XhoI CTCGAG 1 cut(s) 448
XmnI GAANNNNTTC 1 cut(s) 365
XspI CTAG 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.