MD05G1078700.v1.1

Presequence protease 1, chloroplastic mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0024451
Physical Location & Seq
Forward (+)
16608926 .. 16610122
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1078700.v1.1.491

Sequence Viewer

Length: 306 bp
ATGAGGACACTCTTAGAAAGGCCATTATTCGGGCACTTCAGAGAGGATTTTGCCATGCCTCCTGATTCCAAAGGTTGTCAGTTTAGTTTTCTGATGGACTATTTAATGGGAGTCGCATCAGAAGATAGGAAAAAGACACAAAGACATATTGTCAACCAGGACTTCAAGAAATTTGCAGATGCAATCGACTCAGTTAAAAACAAAGGGGTTGTGGTTGCAGTGGGATCGCCATTGGATGTCACCGAAGCAATAGGGAAGCGACCTAAACTCTTCAAACCAAAGTTGGTACGCCGCTATGCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
M16C_assoc Peptidase_M16 Peptidase_M16_C

Protein Analysis

102

Amino Acids

11.53

Weight (kDa)

9.81

Isoelectric Point (pI)

37.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PreP_C PF22516 28 - 76 6.8e-07 PreP C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024451)

Species Orthologous Gene IDs
malus_domestica MD05G1077700.v1.1 MD05G1078700.v1.1
pyrus_communis pycom05g07150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 292
AclWI GGATC 1 cut(s) 232
AcsI RAATTY 1 cut(s) 170
AcuI CTGAAG 1 cut(s) 22
AfaI GTAC 1 cut(s) 288
AfiI CCNNNNNNNGG 1 cut(s) 29
AgsI TTSAA 2 cut(s) 166, 274
AhdI GACNNNNNGTC 1 cut(s) 149
AjnI CCWGG 1 cut(s) 156
AlwI GGATC 1 cut(s) 232
AoxI GGCC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 170
AsuHPI GGTGA 1 cut(s) 232
BaeGI GKGCMC 1 cut(s) 36
BccI CCATC 1 cut(s) 88
BcgI CGANNNNNNTGC 2 cut(s) 207, 241
BciT130I CCWGG 1 cut(s) 158
BisI GCNGC 1 cut(s) 292
BlsI GCNGC 1 cut(s) 293
Bme1390I CCNGG 1 cut(s) 158
BmeRI GACNNNNNGTC 1 cut(s) 149
BmrFI CCNGG 1 cut(s) 158
BmsI GCATC 2 cut(s) 125, 169
Bsc4I CCNNNNNNNGG 1 cut(s) 29
BseBI CCWGG 1 cut(s) 158
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMII CTCAG 1 cut(s) 204
BseSI GKGCMC 1 cut(s) 36
BshFI GGCC 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 29
BsnI GGCC 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 1 cut(s) 224
BspACI CCGC 1 cut(s) 292
BspANI GGCC 1 cut(s) 22
BspCNI CTCAG 1 cut(s) 203
BspPI GGATC 1 cut(s) 232
BssMI GATC 1 cut(s) 224
Bst2UI CCWGG 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 275
BstDEI CTNAG 2 cut(s) 13, 190
BstF5I GGATG 1 cut(s) 241
BstKTI GATC 1 cut(s) 227
BstMBI GATC 1 cut(s) 224
BstNI CCWGG 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 156
BstSLI GKGCMC 1 cut(s) 36
BsuRI GGCC 1 cut(s) 22
BtsCI GGATG 1 cut(s) 241
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 225
Csp6I GTAC 1 cut(s) 287
CviAII CATG 2 cut(s) 55, 303
CviJI RGCY 1 cut(s) 22
CviKI_1 RGCY 1 cut(s) 22
CviQI GTAC 1 cut(s) 287
DdeI CTNAG 2 cut(s) 13, 190
DpnI GATC 1 cut(s) 226
DpnII GATC 1 cut(s) 224
DriI GACNNNNNGTC 1 cut(s) 149
Eam1104I CTCTTC 1 cut(s) 275
Eam1105I GACNNNNNGTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 275
Eco57I CTGAAG 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 156
FaeI CATG 2 cut(s) 58, 306
FaiI YATR 4 cut(s) 56, 147, 297, 304
FatI CATG 2 cut(s) 54, 302
Fnu4HI GCNGC 1 cut(s) 292
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 1 cut(s) 292
GluI GCNGC 1 cut(s) 292
HaeIII GGCC 1 cut(s) 22
Hin1II CATG 2 cut(s) 58, 306
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 3 cut(s) 65, 111, 188
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 3 cut(s) 41, 93, 121
Hpy188III TCNNGA 2 cut(s) 62, 166
Hpy8I GTNNAC 1 cut(s) 154
HpyCH4V TGCA 3 cut(s) 176, 182, 218
HpyF3I CTNAG 2 cut(s) 13, 190
Hsp92II CATG 2 cut(s) 58, 306
Kzo9I GATC 1 cut(s) 224
LpnPI CCDG 3 cut(s) 75, 143, 170
LweI GCATC 2 cut(s) 125, 169
MaeIII GTNAC 1 cut(s) 238
MalI GATC 1 cut(s) 226
MboI GATC 1 cut(s) 224
MboII GAAGA 2 cut(s) 134, 262
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 1 cut(s) 170
MlyI GAGTC 2 cut(s) 120, 182
MnlI CCTC 2 cut(s) 37, 69
MseI TTAA 2 cut(s) 104, 195
MspR9I CCNGG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 158
NdeII GATC 1 cut(s) 224
NlaIII CATG 2 cut(s) 58, 306
NmuCI GTSAC 1 cut(s) 238
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 293
PleI GAGTC 2 cut(s) 119, 182
PpsI GAGTC 2 cut(s) 119, 182
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
SaqAI TTAA 2 cut(s) 104, 195
SatI GCNGC 1 cut(s) 292
Sau3AI GATC 1 cut(s) 224
SchI GAGTC 2 cut(s) 120, 182
ScrFI CCNGG 1 cut(s) 158
SduI GDGCHC 1 cut(s) 36
SetI ASST 2 cut(s) 76, 265
SfaNI GCATC 2 cut(s) 125, 169
SgeI CNNG 6 cut(s) 43, 67, 74, 169, 170, 178
Sse9I AATT 1 cut(s) 170
SsiI CCGC 1 cut(s) 292
StyD4I CCNGG 1 cut(s) 156
TaqI TCGA 1 cut(s) 186
TasI AATT 1 cut(s) 170
TauI GCSGC 1 cut(s) 294
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 2 cut(s) 104, 195
Tru9I TTAA 2 cut(s) 104, 195
TscAI CASTG 1 cut(s) 225
TseFI GTSAC 1 cut(s) 238
Tsp45I GTSAC 1 cut(s) 238
TspRI CASTG 1 cut(s) 225
XapI RAATTY 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.