Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0022423

Physical Location & Seq

Genomic Coordinates Reverse (-)

39675585 .. 39676046

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1261300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGCAAGTCAAATTTGCAATCAAGAACGATGTCACCGAACTGATTGATATCTCAACAATATTTGTTGTGGATGGTTGCGTAGCACGAATTGCTGCCAAGCTAGAGTCAATGGAACTCTGCGCTAGTGTAAAAGGCAGGCATATTCTTTGCACTTTTCCCAAAGGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0042592 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0048878 GO:0050662 GO:0050801 GO:0055080 GO:0055081 GO:0065007 GO:0065008 GO:0070279 GO:0071704 GO:0080144 GO:0080145 GO:0080146 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

57

Amino Acids

6.17

Weight (kDa)

7.72

Isoelectric Point (pI)

26.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022423)

Species	Orthologous Gene IDs
malus_domestica	MD05G1261300.v1.1
pyrus_communis	pycom13g16560
rosa_chinensis	RchiOBHm_Chr3g0452921
rosa_multiflora	Rmu_co8184688.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	11
AluBI	AGCT	1 cut(s)	100
AluI	AGCT	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	122
AsuHPI	GGTGA	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	1 cut(s)	65
BfaI	CTAG	2 cut(s)	101, 123
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
BsaBI	GATNNNNATC	1 cut(s)	47
Bse8I	GATNNNNATC	1 cut(s)	47
BseGI	GGATG	1 cut(s)	76
BseJI	GATNNNNATC	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	79
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	76
BstHHI	GCGC	1 cut(s)	122
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstV1I	GCAGC	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	137
CfoI	GCGC	1 cut(s)	122
CviJI	RGCY	1 cut(s)	100
CviKI_1	RGCY	1 cut(s)	100
Eco32I	GATATC	1 cut(s)	49
EcoRV	GATATC	1 cut(s)	49
FaiI	YATR	1 cut(s)	141
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	1 cut(s)	93
FspBI	CTAG	2 cut(s)	101, 123
FspEI	CC	8 cut(s)	49, 53, 57, 95, 109, 117, 121, 147
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	1 cut(s)	93
HhaI	GCGC	1 cut(s)	122
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HinfI	GANTC	1 cut(s)	104
HphI	GGTGA	1 cut(s)	25
Hpy188III	TCNNGA	1 cut(s)	22
HpyCH4V	TGCA	3 cut(s)	4, 17, 150
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HspAI	GCGC	1 cut(s)	120
LpnPI	CCDG	1 cut(s)	121
Lsp1109I	GCAGC	1 cut(s)	79
MaeI	CTAG	2 cut(s)	101, 123
MaeIII	GTNAC	1 cut(s)	31
MluCI	AATT	2 cut(s)	11, 87
MlyI	GAGTC	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	89
NmuCI	GTSAC	1 cut(s)	31
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PkrI	GCNGC	1 cut(s)	94
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
SatI	GCNGC	1 cut(s)	93
SchI	GAGTC	1 cut(s)	113
SetI	ASST	1 cut(s)	102
SgeI	CNNG	7 cut(s)	17, 34, 96, 109, 113, 135, 148
Sse9I	AATT	2 cut(s)	11, 87
SspI	AATATT	1 cut(s)	60
SspMI	CTAG	2 cut(s)	101, 123
TasI	AATT	2 cut(s)	11, 87
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	31
XapI	RAATTY	1 cut(s)	11
XspI	CTAG	2 cut(s)	101, 123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.