Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022423

Physical Location & Seq

Genomic Coordinates Forward (+)

3473861 .. 3475463

Gene Structure 1603 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42004

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGAGGGCCAATGTGCAATCAAGAAAGATGTCACCGAATTAATTGGAAATACCCCAATGGTATACCTGAACAATGTTGTGGAAGGTTGTGTAGCTCGTATTGCTGCCAAGCTAGAGATGATGGGGCCCTGCTCAAGTGTTAAAGACAGGATTGGACATAGTATGATCAAAGATGCGGAGGATAAAGGTCTAATAACTCCTGACTGTTCTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

71

Amino Acids

7.68

Weight (kDa)

5.69

Isoelectric Point (pI)

2.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	11 - 62	9.6e-09	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022423)

Species	Orthologous Gene IDs
malus_domestica	MD05G1261300.v1.1
pyrus_communis	pycom13g16560
rosa_chinensis	RchiOBHm_Chr3g0452921
rosa_multiflora	Rmu_co8184688.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	63
AciI	CCGC	1 cut(s)	176
AluBI	AGCT	2 cut(s)	95, 112
AluI	AGCT	2 cut(s)	95, 112
AoxI	GGCC	2 cut(s)	7, 125
ApaI	GGGCCC	1 cut(s)	129
ApeKI	GCWGC	1 cut(s)	104
AseI	ATTAAT	1 cut(s)	41
AspS9I	GGNCC	3 cut(s)	7, 125, 126
AsuHPI	GGTGA	1 cut(s)	25
BaeGI	GKGCMC	1 cut(s)	129
BanII	GRGCYC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	1 cut(s)	115
BclI	TGATCA	1 cut(s)	165
BfaI	CTAG	1 cut(s)	113
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
BmgT120I	GGNCC	3 cut(s)	7, 125, 126
BmiI	GGNNCC	2 cut(s)	126, 127
BmsI	GCATC	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	118
BseSI	GKGCMC	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	91
BshFI	GGCC	2 cut(s)	9, 127
BsnI	GGCC	2 cut(s)	9, 127
Bsp120I	GGGCCC	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp143I	GATC	1 cut(s)	165
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	2 cut(s)	9, 127
BspLI	GGNNCC	2 cut(s)	126, 127
BssMI	GATC	1 cut(s)	165
BssNAI	GTATAC	1 cut(s)	64
Bst1107I	GTATAC	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	206
BstKTI	GATC	1 cut(s)	168
BstMBI	GATC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstSLI	GKGCMC	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	91
BstZ17I	GTATAC	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	9, 127
Cfr13I	GGNCC	3 cut(s)	7, 125, 126
CviJI	RGCY	4 cut(s)	9, 95, 112, 127
CviKI_1	RGCY	4 cut(s)	9, 95, 112, 127
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	129
EcoO109I	RGGNCCY	2 cut(s)	125, 126
EcoT38I	GRGCYC	1 cut(s)	129
FaiI	YATR	3 cut(s)	64, 159, 164
FbaI	TGATCA	1 cut(s)	165
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	1 cut(s)	105
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	1 cut(s)	113
GluI	GCNGC	1 cut(s)	105
HaeIII	GGCC	2 cut(s)	9, 127
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188III	TCNNGA	2 cut(s)	22, 200
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
Ksp22I	TGATCA	1 cut(s)	165
Kzo9I	GATC	1 cut(s)	165
LpnPI	CCDG	3 cut(s)	80, 133, 142
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MhlI	GDGCHC	1 cut(s)	129
MluCI	AATT	2 cut(s)	38, 42
MnlI	CCTC	1 cut(s)	172
MseI	TTAA	2 cut(s)	41, 141
MwoI	GCNNNNNNNGC	1 cut(s)	101
NdeII	GATC	1 cut(s)	165
NlaIV	GGNNCC	2 cut(s)	126, 127
NmuCI	GTSAC	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	106
PshBI	ATTAAT	1 cut(s)	41
PspN4I	GGNNCC	2 cut(s)	126, 127
PspOMI	GGGCCC	1 cut(s)	125
PspPI	GGNCC	3 cut(s)	7, 125, 126
SaqAI	TTAA	2 cut(s)	41, 141
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	1 cut(s)	165
Sau96I	GGNCC	3 cut(s)	7, 125, 126
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	5 cut(s)	69, 88, 97, 114, 190
SfaNI	GCATC	1 cut(s)	163
SgeI	CNNG	9 cut(s)	34, 79, 108, 121, 125, 141, 147, 160, 212
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
Sse9I	AATT	2 cut(s)	38, 42
SsiI	CCGC	1 cut(s)	176
SspMI	CTAG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	206
TasI	AATT	2 cut(s)	38, 42
Tru1I	TTAA	2 cut(s)	41, 141
Tru9I	TTAA	2 cut(s)	41, 141
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	31
VspI	ATTAAT	1 cut(s)	41
XmiI	GTMKAC	1 cut(s)	63
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.