MD05G1350600.v1.1

DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0024459
Physical Location & Seq
Forward (+)
46802220 .. 46804174
1955 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1350600.v1.1.491

Sequence Viewer

Length: 675 bp
ATGATAAGTTATCCAAGCCTGATTATCCTCAGTTTTATTATTTTTCCTCTCCCTTCATCATGCAATCACCAAGGGAACACTCATAGCCCTGCAGAGATTGAAGTCACAGCACATCTAAGAACATGGCGAGCTCAACATCCTTCTCCTTTTCAGCATCACCTAAGAAATACGCATGGGGTTCTAAATATTATAGGATGGGGGACTTTGTTGCCGATGGGAGCAATAGCTGCAAGGTACTTCAGAAAATATCCATTTAAGTGCAAGGAATGGTATTCAGTTCACATAATGTGTCAAACCGGTGGATCCGTTGTAGGCACAGTTGGATGGCTTATTGGTATGTTGCTTGGACATTCTTCAAAGGGACACAGTAACAAAACGCATCGCACTCTTGGGATTATTATATTTACATTCACCGCCATACAAATGCTTGCCATGTTTTGGCGACCTAAGCAGCAGGAAGAAAAAGGATTTTCCAATAAGTACGTGAAGATATGCCATCATCTTTTAGGCTACGCTCTAATTGCTCTAACTATAGCAAACATATTTGAAGGAATCAAAAATCAAGCTCATCCTCCAAATTGGAAATGGCCTTATGTCGCAATACTTTGTGTTTTAGGTGTTACTGCTTTAGGGTTAGAAATTTTCAAATGGATTAAATTGAAATTAATGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561

Protein Analysis

225

Amino Acids

25.43

Weight (kDa)

9.84

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_B561 PF03188 58 - 189 1.8e-07 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024459)

Species Orthologous Gene IDs
malus_domestica MD05G1350600.v1.1
prunus_persica Prupe.4G016800_v2.0.a1
pyrus_communis pycom05g31800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 438
AciI CCGC 1 cut(s) 414
AclWI GGATC 2 cut(s) 297, 310
AcsI RAATTY 1 cut(s) 639
AcuI CTGAAG 1 cut(s) 223
AfaI GTAC 2 cut(s) 236, 482
AfiI CCNNNNNNNGG 1 cut(s) 438
AgeI ACCGGT 1 cut(s) 296
AgsI TTSAA 5 cut(s) 101, 357, 548, 646, 661
AluBI AGCT 3 cut(s) 131, 227, 566
AluI AGCT 3 cut(s) 131, 227, 566
Alw21I GWGCWC 1 cut(s) 133
AlwI GGATC 2 cut(s) 297, 310
AoxI GGCC 1 cut(s) 587
ApeKI GCWGC 2 cut(s) 227, 451
ApoI RAATTY 1 cut(s) 639
AseI ATTAAT 1 cut(s) 665
AsiGI ACCGGT 1 cut(s) 296
AsuHPI GGTGA 3 cut(s) 59, 149, 403
BamHI GGATCC 1 cut(s) 302
BanII GRGCYC 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 133
BbvI GCAGC 2 cut(s) 214, 463
BccI CCATC 4 cut(s) 189, 208, 318, 504
BfmI CTRYAG 2 cut(s) 90, 531
BisI GCNGC 2 cut(s) 228, 452
BlsI GCNGC 2 cut(s) 229, 453
BmiI GGNNCC 1 cut(s) 304
BmsI GCATC 2 cut(s) 163, 388
Bpu10I CCTNAGC 1 cut(s) 447
BsaAI YACGTR 1 cut(s) 484
BsaJI CCNNGG 1 cut(s) 70
BsaWI WCCGGW 1 cut(s) 296
Bsc4I CCNNNNNNNGG 1 cut(s) 438
Bse118I RCCGGY 1 cut(s) 296
BseDI CCNNGG 1 cut(s) 70
BseGI GGATG 4 cut(s) 136, 200, 329, 568
BseLI CCNNNNNNNGG 1 cut(s) 438
BseMII CTCAG 1 cut(s) 43
BseXI GCAGC 2 cut(s) 214, 463
BshFI GGCC 1 cut(s) 589
BshTI ACCGGT 1 cut(s) 296
BsiHKAI GWGCWC 1 cut(s) 133
BsiSI CCGG 1 cut(s) 297
BslFI GGGAC 2 cut(s) 214, 375
BslI CCNNNNNNNGG 1 cut(s) 438
BsmFI GGGAC 2 cut(s) 214, 375
BsnI GGCC 1 cut(s) 589
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 1 cut(s) 302
BspACI CCGC 1 cut(s) 414
BspANI GGCC 1 cut(s) 589
BspCNI CTCAG 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 304
BspMAI CTGCAG 1 cut(s) 94
BspPI GGATC 2 cut(s) 297, 310
BsrFI RCCGGY 1 cut(s) 296
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 1 cut(s) 302
BssT1I CCWWGG 1 cut(s) 70
Bst4CI ACNGT 2 cut(s) 319, 368
BstAPI GCANNNNNTGC 1 cut(s) 227
BstBAI YACGTR 1 cut(s) 484
BstC8I GCNNGC 2 cut(s) 129, 429
BstDEI CTNAG 4 cut(s) 29, 116, 161, 447
BstF5I GGATG 4 cut(s) 136, 200, 329, 568
BstKTI GATC 1 cut(s) 305
BstMBI GATC 1 cut(s) 302
BstMWI GCNNNNNNNGC 3 cut(s) 227, 448, 521
BstSFI CTRYAG 2 cut(s) 90, 531
BstV1I GCAGC 2 cut(s) 214, 463
BstX2I RGATCY 1 cut(s) 302
BstYI RGATCY 1 cut(s) 302
BsuRI GGCC 1 cut(s) 589
BtgZI GCGATG 1 cut(s) 365
BtsCI GGATG 4 cut(s) 136, 200, 329, 568
Cac8I GCNNGC 2 cut(s) 129, 429
Cfr10I RCCGGY 1 cut(s) 296
Csp6I GTAC 2 cut(s) 235, 481
CspAI ACCGGT 1 cut(s) 296
CviAII CATG 4 cut(s) 60, 123, 173, 433
CviJI RGCY 8 cut(s) 18, 87, 131, 227, 328, 510, 566, 589
CviKI_1 RGCY 8 cut(s) 18, 87, 131, 227, 328, 510, 566, 589
CviQI GTAC 2 cut(s) 235, 481
DdeI CTNAG 4 cut(s) 29, 116, 161, 447
DpnI GATC 1 cut(s) 304
DpnII GATC 1 cut(s) 302
Ecl136II GAGCTC 1 cut(s) 131
Eco130I CCWWGG 1 cut(s) 70
Eco24I GRGCYC 1 cut(s) 133
Eco53kI GAGCTC 1 cut(s) 131
Eco57I CTGAAG 1 cut(s) 223
EcoICRI GAGCTC 1 cut(s) 131
EcoT14I CCWWGG 1 cut(s) 70
EcoT22I ATGCAT 1 cut(s) 672
EcoT38I GRGCYC 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 4 cut(s) 63, 126, 176, 436
FaqI GGGAC 2 cut(s) 214, 375
FatI CATG 4 cut(s) 59, 122, 172, 432
Fnu4HI GCNGC 2 cut(s) 228, 452
FokI GGATG 4 cut(s) 123, 207, 336, 555
FriOI GRGCYC 1 cut(s) 133
Fsp4HI GCNGC 2 cut(s) 228, 452
GluI GCNGC 2 cut(s) 228, 452
HaeIII GGCC 1 cut(s) 589
HapII CCGG 1 cut(s) 297
Hin1II CATG 4 cut(s) 63, 126, 176, 436
HinfI GANTC 1 cut(s) 552
HpaII CCGG 1 cut(s) 297
HphI GGTGA 3 cut(s) 59, 149, 403
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 1 cut(s) 242
Hpy8I GTNNAC 1 cut(s) 280
HpyAV CCTTC 3 cut(s) 63, 150, 542
HpyCH4III ACNGT 2 cut(s) 319, 368
HpyCH4IV ACGT 1 cut(s) 483
HpyCH4V TGCA 5 cut(s) 63, 92, 230, 261, 670
HpyF10VI GCNNNNNNNGC 3 cut(s) 227, 448, 521
HpyF3I CTNAG 4 cut(s) 29, 116, 161, 447
HpySE526I ACGT 1 cut(s) 483
Hsp92II CATG 4 cut(s) 63, 126, 176, 436
Kzo9I GATC 1 cut(s) 302
LmnI GCTCC 1 cut(s) 218
LpnPI CCDG 4 cut(s) 32, 102, 310, 440
Lsp1109I GCAGC 2 cut(s) 214, 463
LweI GCATC 2 cut(s) 163, 388
MaeII ACGT 1 cut(s) 483
MaeIII GTNAC 3 cut(s) 103, 368, 619
MalI GATC 1 cut(s) 304
MboI GATC 1 cut(s) 302
MboII GAAGA 3 cut(s) 345, 470, 499
MflI RGATCY 1 cut(s) 302
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 5 cut(s) 519, 577, 639, 656, 662
MmeI TCCRAC 1 cut(s) 301
MnlI CCTC 3 cut(s) 38, 57, 582
Mph1103I ATGCAT 1 cut(s) 672
MseI TTAA 3 cut(s) 255, 654, 665
MslI CAYNNNNRTG 2 cut(s) 256, 422
MspI CCGG 1 cut(s) 297
MwoI GCNNNNNNNGC 3 cut(s) 227, 448, 521
NdeII GATC 1 cut(s) 302
NlaIII CATG 4 cut(s) 63, 126, 176, 436
NlaIV GGNNCC 1 cut(s) 304
NmuCI GTSAC 1 cut(s) 103
NsiI ATGCAT 1 cut(s) 672
PfeI GAWTC 1 cut(s) 552
PflMI CCANNNNNTGG 1 cut(s) 438
PinAI ACCGGT 1 cut(s) 296
PkrI GCNGC 2 cut(s) 229, 453
Ppu21I YACGTR 1 cut(s) 484
PshBI ATTAAT 1 cut(s) 665
Psp124BI GAGCTC 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 304
PstI CTGCAG 1 cut(s) 94
PsuI RGATCY 1 cut(s) 302
RsaI GTAC 2 cut(s) 236, 482
RsaNI GTAC 2 cut(s) 235, 481
RseI CAYNNNNRTG 2 cut(s) 256, 422
SacI GAGCTC 1 cut(s) 133
SaqAI TTAA 3 cut(s) 255, 654, 665
SatI GCNGC 2 cut(s) 228, 452
Sau3AI GATC 1 cut(s) 302
SduI GDGCHC 1 cut(s) 133
SetI ASST 8 cut(s) 133, 162, 229, 236, 448, 486, 568, 619
SfaNI GCATC 2 cut(s) 163, 388
SfcI CTRYAG 2 cut(s) 90, 531
SmiMI CAYNNNNRTG 2 cut(s) 256, 422
Sse9I AATT 5 cut(s) 519, 577, 639, 656, 662
SsiI CCGC 1 cut(s) 414
SspI AATATT 1 cut(s) 187
SstI GAGCTC 1 cut(s) 133
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 2 cut(s) 319, 368
TaiI ACGT 1 cut(s) 486
TasI AATT 5 cut(s) 519, 577, 639, 656, 662
TfiI GAWTC 1 cut(s) 552
Tru1I TTAA 3 cut(s) 255, 654, 665
Tru9I TTAA 3 cut(s) 255, 654, 665
TseFI GTSAC 1 cut(s) 103
TseI GCWGC 2 cut(s) 227, 451
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 45
TspGWI ACGGA 1 cut(s) 295
Van91I CCANNNNNTGG 1 cut(s) 438
VspI ATTAAT 1 cut(s) 665
XapI RAATTY 1 cut(s) 639
XcmI CCANNNNNNNNNTGG 1 cut(s) 582
Zsp2I ATGCAT 1 cut(s) 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.