Prupe.4G016800_v2.0.a1

DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0024459
Physical Location & Seq
Reverse (-)
799743 .. 801195
1453 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G016800.1

Sequence Viewer

Length: 804 bp
ATGAGTTACCAAAGCCTGATTATCCTGAGTTTAATTTTTCCTCTGCATTCTGTCAAAGCCAAAACTTCAAGCTGCAATTACCAGGGGAACACTAATCAGATGGTTGACTTGCAGAAACAACTTCATGTTTGGGAAACTTACTCCAATGCTGAAGAGATGAAACCCCAAATGCAGGTTGCTTCTATTCAGAACCCTGCAGTGATCACAACACATCTAAGAACATGGAGGGGTCAAAACCCCTCTCGTTTTCAGCATTACCTAAGAAATACGCATGGGGTTCTGAATATCTTCGGATGGGGAACTTTGTTGCCAATCGGAGCAATAGCCGCTAGGTACTTCAGAAAATTTCCCTTCAAGTGCAGCGAATGGTATTCTGTTCACATAACGTGTCAGAGCGGTGGATACATTGTAGGCACCGTTGGATGGTGTAGTGGCATGTTTCTTGGGAATTCTTCAAAGCAACAAAGCAACAAAACACATCGTGTTCTTGGGATCATTATATTTACTCTCACCACCATTCAAATGCTTGCCATGTTTTGGCGACGTACGGGAGAAAATGGGTTTCCCAAGTACGTGAAGATATGCCATCATCTTCTTGGCTATGCTCTGATTGCTCTAACCATAGCAAACATATTTGAAGGAATAAACAATCGAGCTCATGCTGCAAAGTGGAAATGGACTTATGTTGGAATACTTTGTGTTTTAGGTGTTACTGCTCTAGGATTGGAAATTTTTAAGTGGATTAAGCGTGCAATGATGCGTGAGGCAGTGAAATTGAACAGCAATATGTATACGTCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561

Protein Analysis

268

Amino Acids

30.43

Weight (kDa)

9.9

Isoelectric Point (pI)

36.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024459)

Species Orthologous Gene IDs
malus_domestica MD05G1350600.v1.1
prunus_persica Prupe.4G016800_v2.0.a1
pyrus_communis pycom05g31800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 163
AccB1I GGYRCC 1 cut(s) 413
AccB7I CCANNNNNTGG 1 cut(s) 537
AccBSI CCGCTC 1 cut(s) 396
AccI GTMKAC 1 cut(s) 791
AciI CCGC 2 cut(s) 327, 396
AclWI GGATC 1 cut(s) 500
AcsI RAATTY 3 cut(s) 344, 448, 729
AcuI CTGAAG 2 cut(s) 171, 322
AdeI CACNNNGTG 1 cut(s) 482
AfaI GTAC 3 cut(s) 335, 547, 572
AfiI CCNNNNNNNGG 3 cut(s) 172, 423, 537
AflIII ACRYGT 1 cut(s) 386
AgsI TTSAA 6 cut(s) 69, 355, 456, 521, 638, 778
AjnI CCWGG 1 cut(s) 81
AluBI AGCT 2 cut(s) 72, 656
AluI AGCT 2 cut(s) 72, 656
Alw21I GWGCWC 1 cut(s) 658
AlwI GGATC 1 cut(s) 500
ApeKI GCWGC 3 cut(s) 72, 360, 662
ApoI RAATTY 3 cut(s) 344, 448, 729
Asp700I GAANNNNTTC 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 502
BanI GGYRCC 1 cut(s) 413
BanII GRGCYC 1 cut(s) 658
Bbv12I GWGCWC 1 cut(s) 658
BbvI GCAGC 3 cut(s) 59, 372, 649
BccI CCATC 4 cut(s) 94, 288, 417, 594
BciT130I CCWGG 1 cut(s) 83
BciVI GTATCC 1 cut(s) 395
BclI TGATCA 1 cut(s) 201
BfaI CTAG 2 cut(s) 330, 719
BfmI CTRYAG 1 cut(s) 195
BfuAI ACCTGC 1 cut(s) 163
BfuI GTATCC 1 cut(s) 395
BisI GCNGC 4 cut(s) 73, 327, 361, 663
BlsI GCNGC 4 cut(s) 74, 328, 362, 664
Bme1390I CCNGG 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 415
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 747
BsaAI YACGTR 1 cut(s) 574
BsaJI CCNNGG 1 cut(s) 82
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 423, 537
Bse3DI GCAATG 1 cut(s) 759
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 82
BseGI GGATG 2 cut(s) 299, 428
BseLI CCNNNNNNNGG 3 cut(s) 172, 423, 537
BseMI GCAATG 1 cut(s) 759
BseMII CTCAG 1 cut(s) 17
BseXI GCAGC 3 cut(s) 59, 372, 649
BsgI GTGCAG 1 cut(s) 379
BshNI GGYRCC 1 cut(s) 413
BsiHKAI GWGCWC 1 cut(s) 658
BsiWI CGTACG 1 cut(s) 545
BslI CCNNNNNNNGG 3 cut(s) 172, 423, 537
BsmI GAATGC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 658
Bsp143I GATC 2 cut(s) 201, 492
BspACI CCGC 2 cut(s) 327, 396
BspCNI CTCAG 1 cut(s) 18
BspLI GGNNCC 1 cut(s) 415
BspMAI CTGCAG 1 cut(s) 199
BspMI ACCTGC 1 cut(s) 163
BspPI GGATC 1 cut(s) 500
BspT107I GGYRCC 1 cut(s) 413
BsrBI CCGCTC 1 cut(s) 396
BsrDI GCAATG 1 cut(s) 759
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 2 cut(s) 201, 492
BssNAI GTATAC 1 cut(s) 792
Bst1107I GTATAC 1 cut(s) 792
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 418
Bst6I CTCTTC 1 cut(s) 147
BstBAI YACGTR 1 cut(s) 574
BstC8I GCNNGC 2 cut(s) 528, 750
BstDEI CTNAG 3 cut(s) 26, 215, 260
BstF5I GGATG 2 cut(s) 299, 428
BstKTI GATC 2 cut(s) 204, 495
BstMBI GATC 2 cut(s) 201, 492
BstMWI GCNNNNNNNGC 3 cut(s) 326, 611, 662
BstNI CCWGG 1 cut(s) 83
BstNSI RCATGY 1 cut(s) 439
BstSCI CCNGG 1 cut(s) 81
BstSFI CTRYAG 1 cut(s) 195
BstV1I GCAGC 3 cut(s) 59, 372, 649
BstZ17I GTATAC 1 cut(s) 792
BsuI GTATCC 1 cut(s) 395
BtsCI GGATG 2 cut(s) 299, 428
BtsI GCAGTG 2 cut(s) 204, 774
BtsIMutI CAGTG 2 cut(s) 204, 774
BveI ACCTGC 1 cut(s) 163
Cac8I GCNNGC 2 cut(s) 528, 750
Csp6I GTAC 3 cut(s) 334, 546, 571
CviAII CATG 6 cut(s) 125, 222, 272, 436, 532, 659
CviJI RGCY 6 cut(s) 15, 59, 72, 326, 600, 656
CviKI_1 RGCY 6 cut(s) 15, 59, 72, 326, 600, 656
CviQI GTAC 3 cut(s) 334, 546, 571
DdeI CTNAG 3 cut(s) 26, 215, 260
DpnI GATC 2 cut(s) 203, 494
DpnII GATC 2 cut(s) 201, 492
DraIII CACNNNGTG 1 cut(s) 482
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Ecl136II GAGCTC 1 cut(s) 656
Eco24I GRGCYC 1 cut(s) 658
Eco53kI GAGCTC 1 cut(s) 656
Eco57I CTGAAG 2 cut(s) 171, 322
EcoICRI GAGCTC 1 cut(s) 656
EcoRI GAATTC 1 cut(s) 448
EcoRII CCWGG 1 cut(s) 81
EcoT38I GRGCYC 1 cut(s) 658
FaeI CATG 6 cut(s) 128, 225, 275, 439, 535, 662
FatI CATG 6 cut(s) 124, 221, 271, 435, 531, 658
FbaI TGATCA 1 cut(s) 201
FblI GTMKAC 1 cut(s) 791
Fnu4HI GCNGC 4 cut(s) 73, 327, 361, 663
FokI GGATG 2 cut(s) 306, 435
FriOI GRGCYC 1 cut(s) 658
Fsp4HI GCNGC 4 cut(s) 73, 327, 361, 663
FspBI CTAG 2 cut(s) 330, 719
GluI GCNGC 4 cut(s) 73, 327, 361, 663
Hin1II CATG 6 cut(s) 128, 225, 275, 439, 535, 662
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HphI GGTGA 1 cut(s) 502
Hpy166II GTNNAC 3 cut(s) 106, 379, 792
Hpy188I TCNGA 8 cut(s) 99, 189, 282, 293, 317, 341, 393, 609
Hpy188III TCNNGA 1 cut(s) 25
Hpy8I GTNNAC 3 cut(s) 106, 379, 792
Hpy99I CGWCG 1 cut(s) 546
HpyAV CCTTC 2 cut(s) 361, 632
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4IV ACGT 4 cut(s) 386, 544, 573, 794
HpyCH4V TGCA 8 cut(s) 46, 75, 112, 172, 197, 360, 665, 752
HpyF10VI GCNNNNNNNGC 3 cut(s) 326, 611, 662
HpyF3I CTNAG 3 cut(s) 26, 215, 260
HpySE526I ACGT 4 cut(s) 386, 544, 573, 794
Hsp92II CATG 6 cut(s) 128, 225, 275, 439, 535, 662
Ksp22I TGATCA 1 cut(s) 201
Kzo9I GATC 2 cut(s) 201, 492
LmnI GCTCC 1 cut(s) 317
LpnPI CCDG 6 cut(s) 29, 38, 68, 95, 158, 207
Lsp1109I GCAGC 3 cut(s) 59, 372, 649
LweI GCATC 1 cut(s) 747
MaeI CTAG 2 cut(s) 330, 719
MaeII ACGT 4 cut(s) 386, 544, 573, 794
MaeIII GTNAC 2 cut(s) 5, 709
MalI GATC 2 cut(s) 203, 494
MbiI CCGCTC 1 cut(s) 396
MboI GATC 2 cut(s) 201, 492
MboII GAAGA 5 cut(s) 164, 280, 444, 584, 589
MhlI GDGCHC 1 cut(s) 658
MluCI AATT 6 cut(s) 33, 76, 344, 448, 729, 773
MmeI TCCRAC 2 cut(s) 400, 667
MnlI CCTC 4 cut(s) 51, 219, 250, 757
MroXI GAANNNNTTC 1 cut(s) 287
MseI TTAA 3 cut(s) 32, 735, 744
MslI CAYNNNNRTG 1 cut(s) 521
MspR9I CCNGG 1 cut(s) 83
Mva1269I GAATGC 1 cut(s) 46
MvaI CCWGG 1 cut(s) 83
MwoI GCNNNNNNNGC 3 cut(s) 326, 611, 662
NdeII GATC 2 cut(s) 201, 492
NlaIII CATG 6 cut(s) 128, 225, 275, 439, 535, 662
NlaIV GGNNCC 1 cut(s) 415
NspI RCATGY 1 cut(s) 439
PctI GAATGC 1 cut(s) 46
PdmI GAANNNNTTC 1 cut(s) 287
Pfl23II CGTACG 1 cut(s) 545
PflMI CCANNNNNTGG 1 cut(s) 537
PkrI GCNGC 4 cut(s) 74, 328, 362, 664
Ppu21I YACGTR 1 cut(s) 574
Psp124BI GAGCTC 1 cut(s) 658
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
PspLI CGTACG 1 cut(s) 545
PspN4I GGNNCC 1 cut(s) 415
PstI CTGCAG 1 cut(s) 199
RsaI GTAC 3 cut(s) 335, 547, 572
RsaNI GTAC 3 cut(s) 334, 546, 571
RseI CAYNNNNRTG 1 cut(s) 521
SacI GAGCTC 1 cut(s) 658
SaqAI TTAA 3 cut(s) 32, 735, 744
SatI GCNGC 4 cut(s) 73, 327, 361, 663
Sau3AI GATC 2 cut(s) 201, 492
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 1 cut(s) 658
SfaNI GCATC 1 cut(s) 747
SfcI CTRYAG 1 cut(s) 195
SmiMI CAYNNNNRTG 1 cut(s) 521
Sse9I AATT 6 cut(s) 33, 76, 344, 448, 729, 773
SsiI CCGC 2 cut(s) 327, 396
SspMI CTAG 2 cut(s) 330, 719
SstI GAGCTC 1 cut(s) 658
StyD4I CCNGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 418
TaiI ACGT 4 cut(s) 389, 547, 576, 797
TaqI TCGA 1 cut(s) 652
TasI AATT 6 cut(s) 33, 76, 344, 448, 729, 773
TauI GCSGC 1 cut(s) 329
Tru1I TTAA 3 cut(s) 32, 735, 744
Tru9I TTAA 3 cut(s) 32, 735, 744
TscAI CASTG 2 cut(s) 204, 774
TseI GCWGC 3 cut(s) 72, 360, 662
TspDTI ATGAA 2 cut(s) 113, 173
TspRI CASTG 2 cut(s) 204, 774
Van91I CCANNNNNTGG 1 cut(s) 537
XapI RAATTY 3 cut(s) 344, 448, 729
XceI RCATGY 1 cut(s) 439
XcmI CCANNNNNNNNNTGG 1 cut(s) 593
XmiI GTMKAC 1 cut(s) 791
XmnI GAANNNNTTC 1 cut(s) 287
XspI CTAG 2 cut(s) 330, 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.