pycom05g31800

DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0024459
Physical Location & Seq
Forward (+)
31387996 .. 31388582
587 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g31800.1

Sequence Viewer

Length: 453 bp
ATGATAAGTTATCAAAGCCTGATTGTCCTCAGTTTTATTATTTTTCCTCTCCCTTCATCATGCAATCACCAAGGGAACACTCATAGCCCTGGAGAGATTGAAGTCACAGCACACCTAAGAAAATGGCGAGATCAAAGCCCTTCTCCTTTTCAGCATTACCTAAGAAATACGCATGGGATTCTAAATATTATAGGATGGGGGACTTTGTTGCCGATTGGAGCAATAGCTGCAAGGTACTTCAGAAAATATCCATTTAAGTGCAAGGAGTGGTATTCAGTTCACATAACGTGTCAAACCGGTGGATCCGTTGTAGGCACAGTTGGATGGCTTATTGGTATGTTGCTTGGACATTCTTCAAAGGGACACAGTAACAAAACGCATCGCACTCTTGGGATTATTATATTTACATTCACCGCCATACAAGTAAGTCTCAAACTCCTTGTAGTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561

Protein Analysis

151

Amino Acids

16.77

Weight (kDa)

9.76

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024459)

Species Orthologous Gene IDs
malus_domestica MD05G1350600.v1.1
prunus_persica Prupe.4G016800_v2.0.a1
pyrus_communis pycom05g31800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 414
AclWI GGATC 2 cut(s) 297, 310
AcuI CTGAAG 1 cut(s) 223
AfaI GTAC 1 cut(s) 236
AflIII ACRYGT 1 cut(s) 287
AgeI ACCGGT 1 cut(s) 296
AgsI TTSAA 2 cut(s) 101, 357
AjnI CCWGG 1 cut(s) 88
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
Alw26I GTCTC 1 cut(s) 434
AlwI GGATC 2 cut(s) 297, 310
ApeKI GCWGC 1 cut(s) 227
AsiGI ACCGGT 1 cut(s) 296
AsuHPI GGTGA 2 cut(s) 59, 403
BamHI GGATCC 1 cut(s) 302
BbvI GCAGC 1 cut(s) 214
BccI CCATC 2 cut(s) 189, 318
BciT130I CCWGG 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 434
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
Bme1390I CCNGG 1 cut(s) 90
BmiI GGNNCC 1 cut(s) 304
BmrFI CCNGG 1 cut(s) 90
BmsI GCATC 1 cut(s) 388
BpmI CTGGAG 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 70, 88
BsaWI WCCGGW 1 cut(s) 296
Bse118I RCCGGY 1 cut(s) 296
BseBI CCWGG 1 cut(s) 90
BseDI CCNNGG 2 cut(s) 70, 88
BseGI GGATG 2 cut(s) 200, 329
BseMII CTCAG 1 cut(s) 43
BseXI GCAGC 1 cut(s) 214
BshTI ACCGGT 1 cut(s) 296
BsiSI CCGG 1 cut(s) 297
BslFI GGGAC 2 cut(s) 214, 375
BsmAI GTCTC 1 cut(s) 434
BsmFI GGGAC 2 cut(s) 214, 375
Bsp143I GATC 2 cut(s) 130, 302
BspACI CCGC 1 cut(s) 414
BspCNI CTCAG 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 304
BspPI GGATC 2 cut(s) 297, 310
BsrFI RCCGGY 1 cut(s) 296
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 2 cut(s) 70, 88
BssMI GATC 2 cut(s) 130, 302
BssT1I CCWWGG 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 90
Bst4CI ACNGT 2 cut(s) 319, 368
BstAPI GCANNNNNTGC 1 cut(s) 227
BstDEI CTNAG 3 cut(s) 29, 116, 161
BstF5I GGATG 2 cut(s) 200, 329
BstKTI GATC 2 cut(s) 133, 305
BstMAI GTCTC 1 cut(s) 434
BstMBI GATC 2 cut(s) 130, 302
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstNI CCWGG 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 214
BstX2I RGATCY 1 cut(s) 302
BstYI RGATCY 1 cut(s) 302
BtgZI GCGATG 1 cut(s) 365
BtsCI GGATG 2 cut(s) 200, 329
Cfr10I RCCGGY 1 cut(s) 296
Csp6I GTAC 1 cut(s) 235
CspAI ACCGGT 1 cut(s) 296
CviAII CATG 2 cut(s) 60, 173
CviJI RGCY 5 cut(s) 18, 87, 138, 227, 328
CviKI_1 RGCY 5 cut(s) 18, 87, 138, 227, 328
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 3 cut(s) 29, 116, 161
DpnI GATC 2 cut(s) 132, 304
DpnII GATC 2 cut(s) 130, 302
Eco130I CCWWGG 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 2 cut(s) 63, 176
FaiI YATR 8 cut(s) 61, 84, 174, 191, 284, 338, 401, 419
FaqI GGGAC 2 cut(s) 214, 375
FatI CATG 2 cut(s) 59, 172
Fnu4HI GCNGC 1 cut(s) 228
FokI GGATG 2 cut(s) 207, 336
Fsp4HI GCNGC 1 cut(s) 228
GluI GCNGC 1 cut(s) 228
GsuI CTGGAG 1 cut(s) 111
HapII CCGG 1 cut(s) 297
Hin1II CATG 2 cut(s) 63, 176
HinfI GANTC 1 cut(s) 178
HpaII CCGG 1 cut(s) 297
HphI GGTGA 2 cut(s) 59, 403
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 1 cut(s) 242
Hpy8I GTNNAC 1 cut(s) 280
HpyAV CCTTC 2 cut(s) 63, 150
HpyCH4III ACNGT 2 cut(s) 319, 368
HpyCH4IV ACGT 1 cut(s) 287
HpyCH4V TGCA 3 cut(s) 63, 230, 261
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 3 cut(s) 29, 116, 161
HpySE526I ACGT 1 cut(s) 287
Hsp92II CATG 2 cut(s) 63, 176
Kzo9I GATC 2 cut(s) 130, 302
LmnI GCTCC 1 cut(s) 218
LpnPI CCDG 4 cut(s) 32, 75, 102, 310
Lsp1109I GCAGC 1 cut(s) 214
LweI GCATC 1 cut(s) 388
MaeII ACGT 1 cut(s) 287
MaeIII GTNAC 2 cut(s) 103, 368
MalI GATC 2 cut(s) 132, 304
MboI GATC 2 cut(s) 130, 302
MboII GAAGA 1 cut(s) 345
MflI RGATCY 1 cut(s) 302
MmeI TCCRAC 1 cut(s) 301
MnlI CCTC 2 cut(s) 38, 57
MseI TTAA 2 cut(s) 255, 451
MslI CAYNNNNRTG 1 cut(s) 256
MspI CCGG 1 cut(s) 297
MspR9I CCNGG 1 cut(s) 90
MvaI CCWGG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 227
NdeII GATC 2 cut(s) 130, 302
NlaIII CATG 2 cut(s) 63, 176
NlaIV GGNNCC 1 cut(s) 304
NmuCI GTSAC 1 cut(s) 103
PfeI GAWTC 1 cut(s) 178
PinAI ACCGGT 1 cut(s) 296
PkrI GCNGC 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 88
PspGI CCWGG 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 304
PsuI RGATCY 1 cut(s) 302
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
RseI CAYNNNNRTG 1 cut(s) 256
SaqAI TTAA 2 cut(s) 255, 451
SatI GCNGC 1 cut(s) 228
Sau3AI GATC 2 cut(s) 130, 302
ScrFI CCNGG 1 cut(s) 90
SetI ASST 5 cut(s) 117, 162, 229, 236, 290
SfaNI GCATC 1 cut(s) 388
SmiMI CAYNNNNRTG 1 cut(s) 256
SsiI CCGC 1 cut(s) 414
SspI AATATT 1 cut(s) 187
StyD4I CCNGG 1 cut(s) 88
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 2 cut(s) 319, 368
TaiI ACGT 1 cut(s) 290
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 2 cut(s) 255, 451
Tru9I TTAA 2 cut(s) 255, 451
TseFI GTSAC 1 cut(s) 103
TseI GCWGC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 45
TspGWI ACGGA 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.