MD06G1008400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0024258
Physical Location & Seq
Reverse (-)
921825 .. 923889
2065 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1008400.v1.1.491

Sequence Viewer

Length: 480 bp
ATGGAGCACTCAAAATTCTGCAAAGGGGAAGGTGCTGCTCCCTGCACAGAAATTCTTCCGTCTCCTCCGATTCCTCCTCCACTTTGTCCAAAAGCCATGGAGCACTCTAAATTCTGCCAAGGGGAACCTGCTGCTCCCTGCACAGAAATTCTTCCGCCTCCTCCACTTTCTCCTCCACTTTGTCCAAAAGCCATGGAGCACTCGAAATTCTGCCAGGGGGAACCTGCTGCTTCCTGCACAGAAATTCTTCCAATTCATTTCGCAGCTCATCGACGTGTCAATGAAAACTGGACCTGGCCATTGTGTCTTGTGATCGCTTCAGTACTATGCTCAGCTTGCCACAATGTACTCATGGAAAACACTATGGAGAAGTATGATGTCGAGCCTCTATGGCTTGCAACCATAGTACGGTTTTCAGCTGTGATCCCCAGCCTCATTATTGCCCTGGTCACCACTCGTGGACGAGCCTACAAACGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.47

Weight (kDa)

6.97

Isoelectric Point (pI)

65.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024258)

Species Orthologous Gene IDs
malus_domestica MD06G1007600.v1.1 MD06G1008400.v1.1
pyrus_communis pycom06g00670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 136, 232
AciI CCGC 1 cut(s) 155
AclWI GGATC 1 cut(s) 418
AcoI YGGCCR 1 cut(s) 296
AcsI RAATTY 6 cut(s) 14, 51, 110, 147, 206, 243
AcuI CTGAAG 1 cut(s) 303
AfaI GTAC 3 cut(s) 324, 348, 408
AfiI CCNNNNNNNGG 1 cut(s) 408
AflIII ACRYGT 1 cut(s) 274
AjiI CACGTC 1 cut(s) 275
AjnI CCWGG 3 cut(s) 213, 293, 444
AluBI AGCT 3 cut(s) 266, 335, 419
AluI AGCT 3 cut(s) 266, 335, 419
Alw21I GWGCWC 3 cut(s) 9, 105, 201
Alw26I GTCTC 1 cut(s) 66
AlwI GGATC 1 cut(s) 418
AoxI GGCC 1 cut(s) 296
ApeKI GCWGC 4 cut(s) 35, 131, 227, 263
ApoI RAATTY 6 cut(s) 14, 51, 110, 147, 206, 243
Asp700I GAANNNNTTC 3 cut(s) 54, 150, 246
AspS9I GGNCC 1 cut(s) 291
AsuHPI GGTGA 1 cut(s) 442
AvaII GGWCC 1 cut(s) 291
BalI TGGCCA 1 cut(s) 298
BauI CACGAG 1 cut(s) 456
Bbv12I GWGCWC 3 cut(s) 9, 105, 201
BbvI GCAGC 4 cut(s) 22, 118, 214, 275
BciT130I CCWGG 3 cut(s) 215, 295, 446
BcoDI GTCTC 1 cut(s) 66
BfuAI ACCTGC 2 cut(s) 136, 232
BglI GCCNNNNNGGC 1 cut(s) 391
BisI GCNGC 4 cut(s) 36, 132, 228, 264
BlpI GCTNAGC 1 cut(s) 331
BlsI GCNGC 4 cut(s) 37, 133, 229, 265
BmcAI AGTACT 1 cut(s) 324
Bme1390I CCNGG 3 cut(s) 215, 295, 446
Bme18I GGWCC 1 cut(s) 291
BmgBI CACGTC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 291
BmiI GGNNCC 2 cut(s) 126, 222
BmrFI CCNGG 3 cut(s) 215, 295, 446
Bpu1102I GCTNAGC 1 cut(s) 331
BsaJI CCNNGG 5 cut(s) 96, 118, 192, 214, 444
Bsc4I CCNNNNNNNGG 1 cut(s) 408
Bse1I ACTGG 1 cut(s) 293
BseBI CCWGG 3 cut(s) 215, 295, 446
BseDI CCNNGG 5 cut(s) 96, 118, 192, 214, 444
BseLI CCNNNNNNNGG 1 cut(s) 408
BseMII CTCAG 1 cut(s) 345
BseNI ACTGG 1 cut(s) 293
BseRI GAGGAG 4 cut(s) 54, 66, 150, 162
BseXI GCAGC 4 cut(s) 22, 118, 214, 275
BseYI CCCAGC 1 cut(s) 428
BsgI GTGCAG 3 cut(s) 28, 124, 220
BshFI GGCC 1 cut(s) 298
BsiHKAI GWGCWC 3 cut(s) 9, 105, 201
BslI CCNNNNNNNGG 1 cut(s) 408
BsmAI GTCTC 1 cut(s) 66
BsmBI CGTCTC 1 cut(s) 66
BsnI GGCC 1 cut(s) 298
Bsp1286I GDGCHC 3 cut(s) 9, 105, 201
Bsp143I GATC 2 cut(s) 312, 423
Bsp1720I GCTNAGC 1 cut(s) 331
Bsp19I CCATGG 2 cut(s) 96, 192
BspACI CCGC 1 cut(s) 155
BspANI GGCC 1 cut(s) 298
BspCNI CTCAG 1 cut(s) 344
BspLI GGNNCC 2 cut(s) 126, 222
BspMI ACCTGC 2 cut(s) 136, 232
BspPI GGATC 1 cut(s) 418
BsrI ACTGG 1 cut(s) 293
BssECI CCNNGG 5 cut(s) 96, 118, 192, 214, 444
BssMI GATC 2 cut(s) 312, 423
BssSI CACGAG 1 cut(s) 456
BssT1I CCWWGG 3 cut(s) 96, 118, 192
Bst2BI CACGAG 1 cut(s) 456
Bst2UI CCWGG 3 cut(s) 215, 295, 446
Bst4CI ACNGT 1 cut(s) 411
BstC8I GCNNGC 2 cut(s) 337, 396
BstDEI CTNAG 1 cut(s) 331
BstDSI CCRYGG 2 cut(s) 96, 192
BstEII GGTNACC 1 cut(s) 448
BstKTI GATC 2 cut(s) 315, 426
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 2 cut(s) 312, 423
BstMWI GCNNNNNNNGC 2 cut(s) 336, 391
BstNI CCWGG 3 cut(s) 215, 295, 446
BstPI GGTNACC 1 cut(s) 448
BstSCI CCNGG 3 cut(s) 213, 293, 444
BstV1I GCAGC 4 cut(s) 22, 118, 214, 275
BsuRI GGCC 1 cut(s) 298
BtgI CCRYGG 2 cut(s) 96, 192
BtrI CACGTC 1 cut(s) 275
BveI ACCTGC 2 cut(s) 136, 232
Cac8I GCNNGC 2 cut(s) 337, 396
Cfr13I GGNCC 1 cut(s) 291
Csp6I GTAC 3 cut(s) 323, 347, 407
CviAII CATG 3 cut(s) 97, 193, 352
CviQI GTAC 3 cut(s) 323, 347, 407
DdeI CTNAG 1 cut(s) 331
DpnI GATC 2 cut(s) 314, 425
DpnII GATC 2 cut(s) 312, 423
EaeI YGGCCR 1 cut(s) 296
EciI GGCGGA 1 cut(s) 144
Eco130I CCWWGG 3 cut(s) 96, 118, 192
Eco47I GGWCC 1 cut(s) 291
Eco57I CTGAAG 1 cut(s) 303
Eco91I GGTNACC 1 cut(s) 448
EcoO65I GGTNACC 1 cut(s) 448
EcoRII CCWGG 3 cut(s) 213, 293, 444
EcoT14I CCWWGG 3 cut(s) 96, 118, 192
ErhI CCWWGG 3 cut(s) 96, 118, 192
Esp3I CGTCTC 1 cut(s) 66
FaeI CATG 3 cut(s) 100, 196, 355
FaiI YATR 8 cut(s) 98, 194, 328, 353, 365, 375, 391, 404
FatI CATG 3 cut(s) 96, 192, 351
Fnu4HI GCNGC 4 cut(s) 36, 132, 228, 264
Fsp4HI GCNGC 4 cut(s) 36, 132, 228, 264
GluI GCNGC 4 cut(s) 36, 132, 228, 264
GsaI CCCAGC 1 cut(s) 432
HaeIII GGCC 1 cut(s) 298
Hin1II CATG 3 cut(s) 100, 196, 355
HinfI GANTC 1 cut(s) 70
HphI GGTGA 1 cut(s) 442
Hpy166II GTNNAC 1 cut(s) 461
Hpy188I TCNGA 1 cut(s) 69
Hpy8I GTNNAC 1 cut(s) 461
Hpy99I CGWCG 1 cut(s) 276
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 1 cut(s) 411
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 5 cut(s) 21, 45, 141, 237, 398
HpyF10VI GCNNNNNNNGC 2 cut(s) 336, 391
HpyF3I CTNAG 1 cut(s) 331
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 3 cut(s) 100, 196, 355
Kzo9I GATC 2 cut(s) 312, 423
LmnI GCTCC 5 cut(s) 4, 43, 100, 139, 196
Lsp1109I GCAGC 4 cut(s) 22, 118, 214, 275
MaeII ACGT 1 cut(s) 274
MaeIII GTNAC 1 cut(s) 448
MalI GATC 2 cut(s) 314, 425
MboI GATC 2 cut(s) 312, 423
MboII GAAGA 3 cut(s) 47, 143, 239
MhlI GDGCHC 3 cut(s) 9, 105, 201
MlsI TGGCCA 1 cut(s) 298
MluCI AATT 7 cut(s) 14, 51, 110, 147, 206, 243, 252
MluNI TGGCCA 1 cut(s) 298
MnlI CCTC 8 cut(s) 75, 84, 87, 168, 171, 183, 396, 443
Mox20I TGGCCA 1 cut(s) 298
MroXI GAANNNNTTC 3 cut(s) 54, 150, 246
MscI TGGCCA 1 cut(s) 298
MslI CAYNNNNRTG 1 cut(s) 273
Msp20I TGGCCA 1 cut(s) 298
MspA1I CMGCKG 1 cut(s) 419
MspR9I CCNGG 3 cut(s) 215, 295, 446
MvaI CCWGG 3 cut(s) 215, 295, 446
MwoI GCNNNNNNNGC 2 cut(s) 336, 391
NcoI CCATGG 2 cut(s) 96, 192
NdeII GATC 2 cut(s) 312, 423
NlaIII CATG 3 cut(s) 100, 196, 355
NlaIV GGNNCC 2 cut(s) 126, 222
NmuCI GTSAC 1 cut(s) 448
PdmI GAANNNNTTC 3 cut(s) 54, 150, 246
PfeI GAWTC 1 cut(s) 70
PkrI GCNGC 4 cut(s) 37, 133, 229, 265
Psp6I CCWGG 3 cut(s) 213, 293, 444
PspEI GGTNACC 1 cut(s) 448
PspFI CCCAGC 1 cut(s) 428
PspGI CCWGG 3 cut(s) 213, 293, 444
PspN4I GGNNCC 2 cut(s) 126, 222
PspPI GGNCC 1 cut(s) 291
PvuII CAGCTG 1 cut(s) 419
RsaI GTAC 3 cut(s) 324, 348, 408
RsaNI GTAC 3 cut(s) 323, 347, 407
RseI CAYNNNNRTG 1 cut(s) 273
SatI GCNGC 4 cut(s) 36, 132, 228, 264
Sau3AI GATC 2 cut(s) 312, 423
Sau96I GGNCC 1 cut(s) 291
ScaI AGTACT 1 cut(s) 324
ScrFI CCNGG 3 cut(s) 215, 295, 446
SduI GDGCHC 3 cut(s) 9, 105, 201
SetI ASST 8 cut(s) 34, 130, 226, 268, 277, 296, 337, 421
SinI GGWCC 1 cut(s) 291
SmiMI CAYNNNNRTG 1 cut(s) 273
Sse9I AATT 7 cut(s) 14, 51, 110, 147, 206, 243, 252
SsiI CCGC 1 cut(s) 155
StyD4I CCNGG 3 cut(s) 213, 293, 444
StyI CCWWGG 3 cut(s) 96, 118, 192
TaaI ACNGT 1 cut(s) 411
TaiI ACGT 1 cut(s) 277
TaqI TCGA 3 cut(s) 203, 271, 381
TasI AATT 7 cut(s) 14, 51, 110, 147, 206, 243, 252
TatI WGTACW 2 cut(s) 322, 346
TfiI GAWTC 1 cut(s) 70
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 4 cut(s) 35, 131, 227, 263
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 2 cut(s) 245, 297
TspGWI ACGGA 1 cut(s) 48
VpaK11BI GGWCC 1 cut(s) 291
XapI RAATTY 6 cut(s) 14, 51, 110, 147, 206, 243
XmnI GAANNNNTTC 3 cut(s) 54, 150, 246
ZrmI AGTACT 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.