Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0024258

Physical Location & Seq

Genomic Coordinates Reverse (-)

618712 .. 619316

Gene Structure 605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g00670.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGATCCCCAGCCTCATTATTGCCCTGGTCACCACTCGTGGACGAGCCTACAAGTGGGTTATGGGTTGGGACTTCAACACGTTTTGCTGGGTATTTGCGGGCATTTCTGCTGGTCTAGTGCAGTATTTGGGGACCAATTTGACGAAGAAGACGGATGCTGTATTTGCGTCCTCATTCACCCCGATATCCATGATTTTAGTTATTGGGCTGTCAGCTATGATCTTGCATGATCGCATAAAAAAACCGTGTATTGGGGGTGTCATAATGATCGTGATTGGGCTTTTCATTTTTCATTGGGGAGAATATCGATCAACCTCTAAGGAGGAGGCTCGAGCTGAGGAGGAGCATTTGAGGTGGAGGCTCAATCTGCAGAGGAGGTTCAAGCTATGGAGGACATTCGAGCTGTGGAGGAGGTTCGAGCTGATGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

144

Amino Acids

16.77

Weight (kDa)

10.17

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024258)

Species	Orthologous Gene IDs
malus_domestica	MD06G1007600.v1.1 MD06G1008400.v1.1
pyrus_communis	pycom06g00670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	98
AfiI	CCNNNNNNNGG	2 cut(s)	54, 251
AflIII	ACRYGT	1 cut(s)	78
AgsI	TTSAA	2 cut(s)	76, 382
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	5 cut(s)	215, 335, 385, 403, 421
AluI	AGCT	5 cut(s)	215, 335, 385, 403, 421
Ama87I	CYCGRG	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	132
AsuHPI	GGTGA	2 cut(s)	22, 169
AvaI	CYCGRG	1 cut(s)	330
AvaII	GGWCC	1 cut(s)	132
BauI	CACGAG	1 cut(s)	36
BbsI	GAAGAC	1 cut(s)	155
BbvCI	CCTCAGC	1 cut(s)	336
BciT130I	CCWGG	1 cut(s)	26
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	368
Bme1390I	CCNGG	1 cut(s)	26
Bme18I	GGWCC	1 cut(s)	132
BmeT110I	CYCGRG	1 cut(s)	330
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	1 cut(s)	145
BpiI	GAAGAC	1 cut(s)	155
Bpu10I	CCTNAGC	1 cut(s)	336
Bsa29I	ATCGAT	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 251
BseBI	CCWGG	1 cut(s)	26
BseCI	ATCGAT	1 cut(s)	307
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	1 cut(s)	160
BseLI	CCNNNNNNNGG	2 cut(s)	54, 251
BseMII	CTCAG	1 cut(s)	327
BseRI	GAGGAG	5 cut(s)	338, 353, 356, 388, 424
BseYI	CCCAGC	2 cut(s)	8, 87
BsgI	GTGCAG	1 cut(s)	140
BshVI	ATCGAT	1 cut(s)	307
BsiHKCI	CYCGRG	1 cut(s)	330
BslFI	GGGAC	2 cut(s)	83, 145
BslI	CCNNNNNNNGG	2 cut(s)	54, 251
BsmFI	GGGAC	2 cut(s)	83, 145
BsoBI	CYCGRG	1 cut(s)	330
Bsp143I	GATC	5 cut(s)	3, 219, 229, 267, 308
BspACI	CCGC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	328
BspDI	ATCGAT	1 cut(s)	307
BspLI	GGNNCC	1 cut(s)	133
BspMAI	CTGCAG	1 cut(s)	372
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	5 cut(s)	3, 219, 229, 267, 308
BssSI	CACGAG	1 cut(s)	36
Bst2BI	CACGAG	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	2 cut(s)	318, 336
BstEII	GGTNACC	1 cut(s)	28
BstF5I	GGATG	1 cut(s)	160
BstKTI	GATC	5 cut(s)	6, 222, 232, 270, 311
BstMBI	GATC	5 cut(s)	3, 219, 229, 267, 308
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 367
BstNI	CCWGG	1 cut(s)	26
BstPI	GGTNACC	1 cut(s)	28
BstSCI	CCNGG	1 cut(s)	24
BstSFI	CTRYAG	1 cut(s)	368
BstV2I	GAAGAC	1 cut(s)	155
Bsu15I	ATCGAT	1 cut(s)	307
BsuTUI	ATCGAT	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	160
Cac8I	GCNNGC	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	132
ClaI	ATCGAT	1 cut(s)	307
CseI	GACGC	1 cut(s)	156
CviAII	CATG	2 cut(s)	190, 227
DdeI	CTNAG	2 cut(s)	318, 336
DpnI	GATC	5 cut(s)	5, 221, 231, 269, 310
DpnII	GATC	5 cut(s)	3, 219, 229, 267, 308
Eco32I	GATATC	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	132
Eco88I	CYCGRG	1 cut(s)	330
Eco91I	GGTNACC	1 cut(s)	28
EcoO65I	GGTNACC	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	24
EcoRV	GATATC	1 cut(s)	186
FaeI	CATG	2 cut(s)	193, 230
FaiI	YATR	7 cut(s)	62, 191, 218, 228, 236, 263, 388
FaqI	GGGAC	2 cut(s)	83, 145
FatI	CATG	2 cut(s)	189, 226
FauI	CCCGC	1 cut(s)	91
FokI	GGATG	1 cut(s)	167
FspBI	CTAG	1 cut(s)	116
GsaI	CCCAGC	2 cut(s)	12, 91
HgaI	GACGC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	193, 230
HphI	GGTGA	2 cut(s)	22, 169
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	1 cut(s)	41
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	3 cut(s)	121, 226, 370
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 367
HpyF3I	CTNAG	2 cut(s)	318, 336
HpySE526I	ACGT	1 cut(s)	80
Hsp92II	CATG	2 cut(s)	193, 230
Kzo9I	GATC	5 cut(s)	3, 219, 229, 267, 308
LmnI	GCTCC	1 cut(s)	343
LpnPI	CCDG	5 cut(s)	11, 22, 38, 73, 96
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	1 cut(s)	80
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	5 cut(s)	5, 221, 231, 269, 310
MboI	GATC	5 cut(s)	3, 219, 229, 267, 308
MboII	GAAGA	2 cut(s)	157, 160
MluCI	AATT	1 cut(s)	136
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	164, 367
NdeII	GATC	5 cut(s)	3, 219, 229, 267, 308
NlaIII	CATG	2 cut(s)	193, 230
NlaIV	GGNNCC	1 cut(s)	133
NmuCI	GTSAC	1 cut(s)	28
PaeR7I	CTCGAG	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	24
PspEI	GGTNACC	1 cut(s)	28
PspFI	CCCAGC	2 cut(s)	8, 87
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	1 cut(s)	132
PspXI	VCTCGAGB	1 cut(s)	330
PstI	CTGCAG	1 cut(s)	372
Sau3AI	GATC	5 cut(s)	3, 219, 229, 267, 308
Sau96I	GGNCC	1 cut(s)	132
ScrFI	CCNGG	1 cut(s)	26
SfaNI	GCATC	1 cut(s)	145
SfcI	CTRYAG	1 cut(s)	368
Sfr274I	CTCGAG	1 cut(s)	330
SinI	GGWCC	1 cut(s)	132
SlaI	CTCGAG	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	330
SmoI	CTYRAG	1 cut(s)	330
Sse9I	AATT	1 cut(s)	136
SsiI	CCGC	1 cut(s)	98
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	246
TaiI	ACGT	1 cut(s)	83
TaqI	TCGA	4 cut(s)	307, 331, 399, 417
TasI	AATT	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	28
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	2 cut(s)	274, 281
TspGWI	ACGGA	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	132
XhoI	CTCGAG	1 cut(s)	330
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.