Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0024255

Physical Location & Seq

Genomic Coordinates Reverse (-)

2036525 .. 2037175

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1016400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGGTACTAGGGCTGTTCCACTCGACCGTGAGTTGTGGACAAATGGATATTTCTCAGATATCGCTAAGATTATTGGGGGAGTTTGGTTGAGATGGTGGATCCAAGGAGCTGCAGCAGTGTCGAATATGGGGATGTTCGTTGCTGAAATGAGCAGCGACTCCTTCCAACTTCTTGGGATGGCAGAACAAGGGATGCTCCCCCAGTTTTTTGGTAAGCGGTCTCGTCATGGAACCTCAATTGTAGCTGAAGAAAACTTGTTGTACTGTTTTGAAATTATTTTGGAGTTTATATCATTCATACGGTTAAGGGTGAAGTACCCAGCTACATCTCGTCCTTACAAGATACCCGTTGGAACAGTTGGAGCCATTCTTATGTGTATTCCTCCAACCATACTGATTTGTGTAGTTTTGGCTCTTTCGACACTTAAGATCGTGGTTGTGAGCCTTGTCGCTATATTGATCGGCCTTGTGATGCAGCCCTGTCTCACTTACGTCGAGAGAAAGAGGTGGATGAAGTTCTCCGTCAGTGCTGACCTCCCAGATCTTCACGGTGCTAATCAGGAGGGTGTTGGTTCCATAAGACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006082 GO:0006520 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0006928 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009987 GO:0015075 GO:0015171 GO:0015179 GO:0015203 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015846 GO:0015849 GO:0016020 GO:0016021 GO:0016043 GO:0016477 GO:0019752 GO:0022607 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0048870 GO:0050900 GO:0051179 GO:0051234 GO:0051674 GO:0055085 GO:0065003 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0098656 GO:1901564 GO:1902047 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

196

Amino Acids

21.68

Weight (kDa)

8.98

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024255)

Species	Orthologous Gene IDs
malus_domestica	MD06G1016400.v1.1
pyrus_communis	pycom06g01290 pycom06g01330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	217
AclWI	GGATC	2 cut(s)	94, 107
AcuI	CTGAAG	1 cut(s)	267
AfaI	GTAC	3 cut(s)	7, 263, 317
AflII	CTTAAG	1 cut(s)	425
AgsI	TTSAA	1 cut(s)	272
AluBI	AGCT	3 cut(s)	110, 245, 323
AluI	AGCT	3 cut(s)	110, 245, 323
Alw26I	GTCTC	2 cut(s)	225, 488
AlwI	GGATC	2 cut(s)	94, 107
AoxI	GGCC	1 cut(s)	463
ApeKI	GCWGC	4 cut(s)	110, 113, 153, 475
AsuHPI	GGTGA	1 cut(s)	322
BamHI	GGATCC	1 cut(s)	99
BbvI	GCAGC	4 cut(s)	97, 125, 165, 487
BccI	CCATC	2 cut(s)	87, 172
BcgI	CGANNNNNNTGC	2 cut(s)	102, 136
BcoDI	GTCTC	2 cut(s)	225, 488
BfaI	CTAG	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	111
BfrI	CTTAAG	1 cut(s)	425
BglII	AGATCT	1 cut(s)	541
BisI	GCNGC	4 cut(s)	111, 114, 154, 476
BlsI	GCNGC	4 cut(s)	112, 115, 155, 477
BmiI	GGNNCC	4 cut(s)	101, 232, 364, 574
BmrI	ACTGGG	1 cut(s)	196
BmsI	GCATC	2 cut(s)	183, 462
BmuI	ACTGGG	1 cut(s)	196
BsaI	GGTCTC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	103
Bse1I	ACTGG	1 cut(s)	202
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	4 cut(s)	138, 183, 198, 516
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	202
BseXI	GCAGC	4 cut(s)	97, 125, 165, 487
BseYI	CCCAGC	1 cut(s)	319
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	1 cut(s)	465
BsiEI	CGRYCG	1 cut(s)	28
BsmAI	GTCTC	2 cut(s)	225, 488
BsnI	GGCC	1 cut(s)	465
Bso31I	GGTCTC	1 cut(s)	225
Bsp143I	GATC	4 cut(s)	99, 429, 459, 541
BspACI	CCGC	1 cut(s)	217
BspANI	GGCC	1 cut(s)	465
BspCNI	CTCAG	1 cut(s)	68
BspLI	GGNNCC	4 cut(s)	101, 232, 364, 574
BspMAI	CTGCAG	1 cut(s)	115
BspPI	GGATC	2 cut(s)	94, 107
BspTI	CTTAAG	1 cut(s)	425
BspTNI	GGTCTC	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	202
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	4 cut(s)	99, 429, 459, 541
BssT1I	CCWWGG	1 cut(s)	103
Bst4CI	ACNGT	5 cut(s)	29, 266, 303, 358, 551
BstAFI	CTTAAG	1 cut(s)	425
BstDEI	CTNAG	2 cut(s)	55, 66
BstF5I	GGATG	4 cut(s)	138, 183, 198, 516
BstKTI	GATC	4 cut(s)	102, 432, 462, 544
BstMAI	GTCTC	2 cut(s)	225, 488
BstMBI	GATC	4 cut(s)	99, 429, 459, 541
BstMCI	CGRYCG	1 cut(s)	28
BstSFI	CTRYAG	1 cut(s)	111
BstV1I	GCAGC	4 cut(s)	97, 125, 165, 487
BstX2I	RGATCY	2 cut(s)	99, 541
BstXI	CCANNNNNNTGG	2 cut(s)	173, 209
BstYI	RGATCY	2 cut(s)	99, 541
BsuRI	GGCC	1 cut(s)	465
BtsCI	GGATG	4 cut(s)	138, 183, 198, 516
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	2 cut(s)	123, 532
Csp6I	GTAC	3 cut(s)	6, 262, 316
CviAII	CATG	1 cut(s)	227
CviJI	RGCY	9 cut(s)	14, 110, 245, 323, 365, 413, 444, 465, 478
CviKI_1	RGCY	9 cut(s)	14, 110, 245, 323, 365, 413, 444, 465, 478
CviQI	GTAC	3 cut(s)	6, 262, 316
DdeI	CTNAG	2 cut(s)	55, 66
DpnI	GATC	4 cut(s)	101, 431, 461, 543
DpnII	GATC	4 cut(s)	99, 429, 459, 541
Eco130I	CCWWGG	1 cut(s)	103
Eco31I	GGTCTC	1 cut(s)	225
Eco32I	GATATC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	267
EcoRV	GATATC	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	1 cut(s)	230
FaiI	YATR	8 cut(s)	128, 228, 290, 299, 374, 392, 455, 578
FatI	CATG	1 cut(s)	226
Fnu4HI	GCNGC	4 cut(s)	111, 114, 154, 476
FokI	GGATG	4 cut(s)	145, 190, 205, 523
Fsp4HI	GCNGC	4 cut(s)	111, 114, 154, 476
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	4 cut(s)	111, 114, 154, 476
GsaI	CCCAGC	1 cut(s)	323
HaeIII	GGCC	1 cut(s)	465
Hin1II	CATG	1 cut(s)	230
HinfI	GANTC	1 cut(s)	158
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	2 cut(s)	496, 560
Hpy8I	GTNNAC	1 cut(s)	39
Hpy99I	CGWCG	1 cut(s)	497
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	5 cut(s)	29, 266, 303, 358, 551
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	2 cut(s)	113, 475
HpyF3I	CTNAG	2 cut(s)	55, 66
HpySE526I	ACGT	1 cut(s)	492
Hsp92II	CATG	1 cut(s)	230
Kzo9I	GATC	4 cut(s)	99, 429, 459, 541
LmnI	GCTCC	3 cut(s)	107, 201, 362
LpnPI	CCDG	5 cut(s)	215, 333, 493, 545, 552
Lsp1109I	GCAGC	4 cut(s)	97, 125, 165, 487
LweI	GCATC	2 cut(s)	183, 462
MaeI	CTAG	1 cut(s)	9
MaeII	ACGT	1 cut(s)	492
MalI	GATC	4 cut(s)	101, 431, 461, 543
MboI	GATC	4 cut(s)	99, 429, 459, 541
MboII	GAAGA	2 cut(s)	260, 536
MfeI	CAATTG	1 cut(s)	237
MflI	RGATCY	2 cut(s)	99, 541
MluCI	AATT	2 cut(s)	237, 273
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	4 cut(s)	190, 331, 340, 410
MnlI	CCTC	5 cut(s)	244, 393, 498, 545, 556
MseI	TTAA	2 cut(s)	305, 426
MslI	CAYNNNNRTG	1 cut(s)	371
MspCI	CTTAAG	1 cut(s)	425
MunI	CAATTG	1 cut(s)	237
NdeII	GATC	4 cut(s)	99, 429, 459, 541
NlaIII	CATG	1 cut(s)	230
NlaIV	GGNNCC	4 cut(s)	101, 232, 364, 574
PkrI	GCNGC	4 cut(s)	112, 115, 155, 477
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PspFI	CCCAGC	1 cut(s)	319
PspN4I	GGNNCC	4 cut(s)	101, 232, 364, 574
PstI	CTGCAG	1 cut(s)	115
PsuI	RGATCY	2 cut(s)	99, 541
RsaI	GTAC	3 cut(s)	7, 263, 317
RsaNI	GTAC	3 cut(s)	6, 262, 316
RseI	CAYNNNNRTG	1 cut(s)	371
SaqAI	TTAA	2 cut(s)	305, 426
SatI	GCNGC	4 cut(s)	111, 114, 154, 476
Sau3AI	GATC	4 cut(s)	99, 429, 459, 541
SchI	GAGTC	1 cut(s)	152
SetI	ASST	7 cut(s)	112, 236, 247, 325, 495, 509, 537
SfaNI	GCATC	2 cut(s)	183, 462
SfcI	CTRYAG	1 cut(s)	111
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	2 cut(s)	237, 273
SsiI	CCGC	1 cut(s)	217
SspMI	CTAG	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	5 cut(s)	29, 266, 303, 358, 551
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	4 cut(s)	24, 122, 419, 495
TasI	AATT	2 cut(s)	237, 273
TatI	WGTACW	1 cut(s)	261
Tru1I	TTAA	2 cut(s)	305, 426
Tru9I	TTAA	2 cut(s)	305, 426
TscAI	CASTG	2 cut(s)	123, 532
TseI	GCWGC	4 cut(s)	110, 113, 153, 475
TspDTI	ATGAA	2 cut(s)	286, 527
TspGWI	ACGGA	1 cut(s)	511
TspRI	CASTG	2 cut(s)	123, 532
Vha464I	CTTAAG	1 cut(s)	425
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.