Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0024255

Physical Location & Seq

Genomic Coordinates Reverse (-)

1352011 .. 1352643

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g01330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGGTACTGGGGCTGTTCCACTCGACCGTGAGTTGTGGACAGATGGATATTTCTCAGACATTGCCAAAATATTTGGGGGAGTTTGGTTGAGATGGTGGATCGAAGGGGCTGCAGCAGTTTCGAATATGGGGATGTTTGTTGCTGAAATGAGCAGCGACTCCTTCCAACTTCTTGGGATGGCAGAACGAGGGATGCTCCCTAAGTTTTTTGGTGAGCGTTCTCGTCATGGAACCCAAGTAATTGGCATTTTGTTCTCAGCTTCTGGGGTCCTTTTGCTATCTTGGTTGAGCTTTCAAGAGATTGTAGCTGCAGAAAACTTCTTGTACTGTTTTGGAATGATCTTGGAGTTTATATCGTTGATACGGTTAAGAGTGAAGTACCCAGCTACATCTCGTCCTTACAAGATACCTGTTGGAACAGTTGGAGCCATTCTTATGTGTATTCCTCCAACCACACTAATTTGTGTAGTTTTGGCTCTTTCAACACTCAAGATCGCTATATTGATCGGCCTTGTGATGCAGCCATGTCTCACTTACGTTGAGAGAAAGAGGTGGATCAAGTTCTCTGTCAGCGCCGACCTCCCAGATCTTCACGGTGCTAATCAGGGAAGTGTTGGCGCCATAAGACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006082 GO:0006520 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0006928 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009987 GO:0015075 GO:0015171 GO:0015179 GO:0015203 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015846 GO:0015849 GO:0016020 GO:0016021 GO:0016043 GO:0016477 GO:0019752 GO:0022607 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0048870 GO:0050900 GO:0051179 GO:0051234 GO:0051674 GO:0055085 GO:0065003 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0098656 GO:1901564 GO:1902047 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

211

Amino Acids

23.15

Weight (kDa)

8.73

Isoelectric Point (pI)

33.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	22 - 148	2.2e-11	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024255)

Species	Orthologous Gene IDs
malus_domestica	MD06G1016400.v1.1
pyrus_communis	pycom06g01290 pycom06g01330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	617
AclWI	GGATC	2 cut(s)	107, 563
AcyI	GRCGYC	1 cut(s)	618
AfaI	GTAC	3 cut(s)	7, 326, 380
AgsI	TTSAA	2 cut(s)	296, 483
AluBI	AGCT	4 cut(s)	260, 291, 308, 386
AluI	AGCT	4 cut(s)	260, 291, 308, 386
Alw26I	GTCTC	1 cut(s)	533
AlwI	GGATC	2 cut(s)	107, 563
AlwNI	CAGNNNCTG	1 cut(s)	263
AoxI	GGCC	1 cut(s)	508
ApeKI	GCWGC	5 cut(s)	110, 113, 153, 308, 520
AspLEI	GCGC	2 cut(s)	575, 620
AspS9I	GGNCC	1 cut(s)	268
AsuHPI	GGTGA	1 cut(s)	224
AsuII	TTCGAA	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	617
BbvI	GCAGC	5 cut(s)	97, 125, 165, 295, 532
BccI	CCATC	3 cut(s)	38, 87, 172
BcgI	CGANNNNNNTGC	4 cut(s)	92, 102, 126, 136
BcoDI	GTCTC	1 cut(s)	533
BfmI	CTRYAG	2 cut(s)	111, 309
BfoI	RGCGCY	2 cut(s)	576, 621
BglII	AGATCT	1 cut(s)	586
BisI	GCNGC	5 cut(s)	111, 114, 154, 309, 521
BlsI	GCNGC	5 cut(s)	112, 115, 155, 310, 522
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	4 cut(s)	232, 269, 427, 619
BmrI	ACTGGG	1 cut(s)	18
BmsI	GCATC	2 cut(s)	183, 507
BmuI	ACTGGG	1 cut(s)	18
BplI	GAGNNNNNCTC	2 cut(s)	180, 212
Bpu14I	TTCGAA	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	473
BsaHI	GRCGYC	1 cut(s)	618
Bse1I	ACTGG	1 cut(s)	13
Bse3DI	GCAATG	1 cut(s)	60
BseGI	GGATG	3 cut(s)	138, 183, 198
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	2 cut(s)	69, 270
BseNI	ACTGG	1 cut(s)	13
BseXI	GCAGC	5 cut(s)	97, 125, 165, 295, 532
BseYI	CCCAGC	1 cut(s)	382
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	1 cut(s)	510
BshNI	GGYRCC	1 cut(s)	617
BsiEI	CGRYCG	1 cut(s)	28
BsmAI	GTCTC	1 cut(s)	533
BsnI	GGCC	1 cut(s)	510
Bsp119I	TTCGAA	1 cut(s)	122
Bsp143I	GATC	6 cut(s)	99, 339, 492, 504, 555, 586
BspANI	GGCC	1 cut(s)	510
BspCNI	CTCAG	2 cut(s)	68, 269
BspLI	GGNNCC	4 cut(s)	232, 269, 427, 619
BspMAI	CTGCAG	2 cut(s)	115, 313
BspPI	GGATC	2 cut(s)	107, 563
BspT104I	TTCGAA	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	617
BsrDI	GCAATG	1 cut(s)	60
BsrI	ACTGG	1 cut(s)	13
BssMI	GATC	6 cut(s)	99, 339, 492, 504, 555, 586
BssNI	GRCGYC	1 cut(s)	618
Bst4CI	ACNGT	5 cut(s)	29, 329, 366, 421, 596
BstACI	GRCGYC	1 cut(s)	618
BstBI	TTCGAA	1 cut(s)	122
BstDEI	CTNAG	3 cut(s)	55, 201, 256
BstF5I	GGATG	3 cut(s)	138, 183, 198
BstH2I	RGCGCY	2 cut(s)	576, 621
BstHHI	GCGC	2 cut(s)	575, 620
BstKTI	GATC	6 cut(s)	102, 342, 495, 507, 558, 589
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	6 cut(s)	99, 339, 492, 504, 555, 586
BstMCI	CGRYCG	1 cut(s)	28
BstSFI	CTRYAG	2 cut(s)	111, 309
BstV1I	GCAGC	5 cut(s)	97, 125, 165, 295, 532
BstX2I	RGATCY	1 cut(s)	586
BstXI	CCANNNNNNTGG	2 cut(s)	173, 242
BstYI	RGATCY	1 cut(s)	586
BsuRI	GGCC	1 cut(s)	510
BtsCI	GGATG	3 cut(s)	138, 183, 198
CaiI	CAGNNNCTG	1 cut(s)	263
CfoI	GCGC	2 cut(s)	575, 620
Cfr13I	GGNCC	1 cut(s)	268
Csp6I	GTAC	3 cut(s)	6, 325, 379
CviAII	CATG	2 cut(s)	227, 525
CviQI	GTAC	3 cut(s)	6, 325, 379
DdeI	CTNAG	3 cut(s)	55, 201, 256
DinI	GGCGCC	1 cut(s)	619
DpnI	GATC	6 cut(s)	101, 341, 494, 506, 557, 588
DpnII	GATC	6 cut(s)	99, 339, 492, 504, 555, 586
Eco47I	GGWCC	1 cut(s)	268
EcoO109I	RGGNCCY	1 cut(s)	268
EgeI	GGCGCC	1 cut(s)	619
EheI	GGCGCC	1 cut(s)	619
FaeI	CATG	2 cut(s)	230, 528
FaiI	YATR	7 cut(s)	128, 228, 353, 437, 500, 526, 623
FatI	CATG	2 cut(s)	226, 524
Fnu4HI	GCNGC	5 cut(s)	111, 114, 154, 309, 521
FokI	GGATG	3 cut(s)	145, 190, 205
Fsp4HI	GCNGC	5 cut(s)	111, 114, 154, 309, 521
GlaI	GCGC	2 cut(s)	574, 619
GluI	GCNGC	5 cut(s)	111, 114, 154, 309, 521
GsaI	CCCAGC	1 cut(s)	386
HaeII	RGCGCY	2 cut(s)	576, 621
HaeIII	GGCC	1 cut(s)	510
HhaI	GCGC	2 cut(s)	575, 620
Hin1I	GRCGYC	1 cut(s)	618
Hin1II	CATG	2 cut(s)	230, 528
Hin6I	GCGC	2 cut(s)	573, 618
HinP1I	GCGC	2 cut(s)	573, 618
HinfI	GANTC	1 cut(s)	158
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	2 cut(s)	296, 490
Hpy8I	GTNNAC	1 cut(s)	39
HpyAV	CCTTC	2 cut(s)	98, 172
HpyCH4III	ACNGT	5 cut(s)	29, 329, 366, 421, 596
HpyCH4IV	ACGT	1 cut(s)	537
HpyCH4V	TGCA	3 cut(s)	113, 311, 520
HpyF3I	CTNAG	3 cut(s)	55, 201, 256
HpySE526I	ACGT	1 cut(s)	537
Hsp92I	GRCGYC	1 cut(s)	618
Hsp92II	CATG	2 cut(s)	230, 528
HspAI	GCGC	2 cut(s)	573, 618
KasI	GGCGCC	1 cut(s)	617
Kzo9I	GATC	6 cut(s)	99, 339, 492, 504, 555, 586
LmnI	GCTCC	2 cut(s)	201, 425
LpnPI	CCDG	5 cut(s)	249, 396, 423, 590, 597
Lsp1109I	GCAGC	5 cut(s)	97, 125, 165, 295, 532
LweI	GCATC	2 cut(s)	183, 507
MaeII	ACGT	1 cut(s)	537
MalI	GATC	6 cut(s)	101, 341, 494, 506, 557, 588
MboI	GATC	6 cut(s)	99, 339, 492, 504, 555, 586
MboII	GAAGA	1 cut(s)	581
MflI	RGATCY	1 cut(s)	586
MluCI	AATT	2 cut(s)	240, 459
Mly113I	GGCGCC	1 cut(s)	618
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	4 cut(s)	190, 394, 403, 473
MnlI	CCTC	4 cut(s)	182, 456, 543, 590
MseI	TTAA	1 cut(s)	368
MslI	CAYNNNNRTG	1 cut(s)	434
NarI	GGCGCC	1 cut(s)	618
NdeII	GATC	6 cut(s)	99, 339, 492, 504, 555, 586
NlaIII	CATG	2 cut(s)	230, 528
NlaIV	GGNNCC	4 cut(s)	232, 269, 427, 619
NspV	TTCGAA	1 cut(s)	122
PkrI	GCNGC	5 cut(s)	112, 115, 155, 310, 522
PleI	GAGTC	1 cut(s)	152
PluTI	GGCGCC	1 cut(s)	621
PpsI	GAGTC	1 cut(s)	152
PpuMI	RGGWCCY	1 cut(s)	268
Psp5II	RGGWCCY	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	382
PspN4I	GGNNCC	4 cut(s)	232, 269, 427, 619
PspPI	GGNCC	1 cut(s)	268
PspPPI	RGGWCCY	1 cut(s)	268
PstI	CTGCAG	2 cut(s)	115, 313
PstNI	CAGNNNCTG	1 cut(s)	263
PsuI	RGATCY	1 cut(s)	586
RsaI	GTAC	3 cut(s)	7, 326, 380
RsaNI	GTAC	3 cut(s)	6, 325, 379
RseI	CAYNNNNRTG	1 cut(s)	434
SaqAI	TTAA	1 cut(s)	368
SatI	GCNGC	5 cut(s)	111, 114, 154, 309, 521
Sau3AI	GATC	6 cut(s)	99, 339, 492, 504, 555, 586
Sau96I	GGNCC	1 cut(s)	268
SchI	GAGTC	1 cut(s)	152
SetI	ASST	8 cut(s)	262, 293, 310, 388, 412, 540, 554, 582
SfaNI	GCATC	2 cut(s)	183, 507
SfcI	CTRYAG	2 cut(s)	111, 309
SfoI	GGCGCC	1 cut(s)	619
SfuI	TTCGAA	1 cut(s)	122
SinI	GGWCC	1 cut(s)	268
SmiMI	CAYNNNNRTG	1 cut(s)	434
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	2 cut(s)	240, 459
SspDI	GGCGCC	1 cut(s)	617
SspI	AATATT	1 cut(s)	72
TaaI	ACNGT	5 cut(s)	29, 329, 366, 421, 596
TaiI	ACGT	1 cut(s)	540
TaqI	TCGA	3 cut(s)	24, 102, 122
TasI	AATT	2 cut(s)	240, 459
TatI	WGTACW	1 cut(s)	324
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TseI	GCWGC	5 cut(s)	110, 113, 153, 308, 520
VpaK11BI	GGWCC	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.