Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0024255

Physical Location & Seq

Genomic Coordinates Reverse (-)

1328812 .. 1329462

Gene Structure 651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g01290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGGTACTGGGGCTGTTCCACTCGACCGTGACTTGCGGACCGATGGATATTTCTCAGACATTGCCAAAATAATTGGGGGAGTTTGGTTGAGATGGTGGATCCAAGGGGCTGTAGCAGTGTCGAACATGGGGATGTTTGTTGCTGAAATGAGCAGCGACTCCTTCCAACTTCTTGGGATGGCAGAACGAGGGATGCTCCCTAAGTTTTTTGGTGAGCGTTCTCGTCATGGAACCCAAGTAATTGGCATTTTGTTCTCAGCTTCTGGGGTCCTTTCGCTATCTTGGTTGAGCTTTCAAGAGATTGTAGCCGCAGAAAACTTCTTGTACTGTTTTGGAATGATCTTGGAGTTTATATCGTTGATACGGTTAAGAGTGAAGTACCCAGCTACATCTCGTCCTTACAAGATACCCGTTGGAACAGTTGGAGCCATTCTTATGTTTATTCCTCCAACCGCACTAATTTGTGTAGTTTTGGCTCTTTCAACACTCAAGATCGTAGTTGTGAGCCTTGTCGCTATATTGATCGGCCTTGTGATGCAGCCATGTCTCACTTACGTTGAGAGAAAGAGGTCGATCAAGTTCTCCGTCAGCGCCGACCTCCCAGGTCTTCACGGTGCTAATCAGGGAAGGGTTGGCGCCATAAGACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006082 GO:0006520 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0006928 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009987 GO:0015075 GO:0015171 GO:0015179 GO:0015203 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015846 GO:0015849 GO:0016020 GO:0016021 GO:0016043 GO:0016477 GO:0019752 GO:0022607 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0048870 GO:0050900 GO:0051179 GO:0051234 GO:0051674 GO:0055085 GO:0065003 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0098656 GO:1901564 GO:1902047 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

217

Amino Acids

23.59

Weight (kDa)

9.62

Isoelectric Point (pI)

30.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024255)

Species	Orthologous Gene IDs
malus_domestica	MD06G1016400.v1.1
pyrus_communis	pycom06g01290 pycom06g01330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	635
AciI	CCGC	3 cut(s)	37, 309, 453
AclWI	GGATC	2 cut(s)	94, 107
AcyI	GRCGYC	1 cut(s)	636
AfaI	GTAC	3 cut(s)	7, 326, 380
AgsI	TTSAA	2 cut(s)	296, 483
AjnI	CCWGG	1 cut(s)	601
AluBI	AGCT	3 cut(s)	260, 291, 386
AluI	AGCT	3 cut(s)	260, 291, 386
Alw26I	GTCTC	1 cut(s)	551
AlwI	GGATC	2 cut(s)	94, 107
AlwNI	CAGNNNCTG	1 cut(s)	263
AoxI	GGCC	1 cut(s)	526
ApeKI	GCWGC	2 cut(s)	153, 538
AspLEI	GCGC	2 cut(s)	593, 638
AspS9I	GGNCC	2 cut(s)	39, 268
AsuHPI	GGTGA	1 cut(s)	224
AvaII	GGWCC	2 cut(s)	39, 268
BamHI	GGATCC	1 cut(s)	99
BanI	GGYRCC	1 cut(s)	635
BbsI	GAAGAC	1 cut(s)	599
BbvI	GCAGC	2 cut(s)	165, 550
BccI	CCATC	3 cut(s)	38, 87, 172
BciT130I	CCWGG	1 cut(s)	603
BcoDI	GTCTC	1 cut(s)	551
BfmI	CTRYAG	1 cut(s)	111
BfoI	RGCGCY	2 cut(s)	594, 639
BisI	GCNGC	3 cut(s)	154, 309, 539
BlsI	GCNGC	3 cut(s)	155, 310, 540
Bme1390I	CCNGG	1 cut(s)	603
Bme18I	GGWCC	2 cut(s)	39, 268
BmgT120I	GGNCC	2 cut(s)	39, 268
BmiI	GGNNCC	5 cut(s)	101, 232, 269, 427, 637
BmrFI	CCNGG	1 cut(s)	603
BmrI	ACTGGG	1 cut(s)	18
BmsI	GCATC	2 cut(s)	183, 525
BmuI	ACTGGG	1 cut(s)	18
BpiI	GAAGAC	1 cut(s)	599
BplI	GAGNNNNNCTC	2 cut(s)	180, 212
BpuEI	CTTGAG	1 cut(s)	473
BsaHI	GRCGYC	1 cut(s)	636
BsaJI	CCNNGG	2 cut(s)	103, 601
Bse1I	ACTGG	1 cut(s)	13
Bse3DI	GCAATG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	603
BseDI	CCNNGG	2 cut(s)	103, 601
BseGI	GGATG	3 cut(s)	138, 183, 198
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	2 cut(s)	69, 270
BseNI	ACTGG	1 cut(s)	13
BseXI	GCAGC	2 cut(s)	165, 550
BseYI	CCCAGC	1 cut(s)	382
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	1 cut(s)	528
BshNI	GGYRCC	1 cut(s)	635
BsiEI	CGRYCG	1 cut(s)	28
BsmAI	GTCTC	1 cut(s)	551
BsnI	GGCC	1 cut(s)	528
Bsp143I	GATC	5 cut(s)	99, 339, 492, 522, 573
BspACI	CCGC	3 cut(s)	37, 309, 453
BspANI	GGCC	1 cut(s)	528
BspCNI	CTCAG	2 cut(s)	68, 269
BspLI	GGNNCC	5 cut(s)	101, 232, 269, 427, 637
BspPI	GGATC	2 cut(s)	94, 107
BspT107I	GGYRCC	1 cut(s)	635
BsrDI	GCAATG	1 cut(s)	60
BsrI	ACTGG	1 cut(s)	13
BssECI	CCNNGG	2 cut(s)	103, 601
BssMI	GATC	5 cut(s)	99, 339, 492, 522, 573
BssNI	GRCGYC	1 cut(s)	636
BssT1I	CCWWGG	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	603
Bst4CI	ACNGT	6 cut(s)	29, 329, 366, 421, 614, 648
BstACI	GRCGYC	1 cut(s)	636
BstDEI	CTNAG	3 cut(s)	55, 201, 256
BstF5I	GGATG	3 cut(s)	138, 183, 198
BstH2I	RGCGCY	2 cut(s)	594, 639
BstHHI	GCGC	2 cut(s)	593, 638
BstKTI	GATC	5 cut(s)	102, 342, 495, 525, 576
BstMAI	GTCTC	1 cut(s)	551
BstMBI	GATC	5 cut(s)	99, 339, 492, 522, 573
BstMCI	CGRYCG	1 cut(s)	28
BstNI	CCWGG	1 cut(s)	603
BstSCI	CCNGG	1 cut(s)	601
BstSFI	CTRYAG	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	165, 550
BstV2I	GAAGAC	1 cut(s)	599
BstX2I	RGATCY	1 cut(s)	99
BstXI	CCANNNNNNTGG	2 cut(s)	173, 242
BstYI	RGATCY	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	528
BtsCI	GGATG	3 cut(s)	138, 183, 198
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	123
CaiI	CAGNNNCTG	1 cut(s)	263
CfoI	GCGC	2 cut(s)	593, 638
Cfr13I	GGNCC	2 cut(s)	39, 268
CpoI	CGGWCCG	1 cut(s)	39
Csp6I	GTAC	3 cut(s)	6, 325, 379
CspI	CGGWCCG	1 cut(s)	39
CviAII	CATG	3 cut(s)	127, 227, 543
CviQI	GTAC	3 cut(s)	6, 325, 379
DdeI	CTNAG	3 cut(s)	55, 201, 256
DinI	GGCGCC	1 cut(s)	637
DpnI	GATC	5 cut(s)	101, 341, 494, 524, 575
DpnII	GATC	5 cut(s)	99, 339, 492, 522, 573
Eco130I	CCWWGG	1 cut(s)	103
Eco47I	GGWCC	2 cut(s)	39, 268
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	601
EcoT14I	CCWWGG	1 cut(s)	103
EgeI	GGCGCC	1 cut(s)	637
EheI	GGCGCC	1 cut(s)	637
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	3 cut(s)	130, 230, 546
FaiI	YATR	7 cut(s)	128, 228, 353, 437, 518, 544, 641
FatI	CATG	3 cut(s)	126, 226, 542
Fnu4HI	GCNGC	3 cut(s)	154, 309, 539
FokI	GGATG	3 cut(s)	145, 190, 205
Fsp4HI	GCNGC	3 cut(s)	154, 309, 539
GlaI	GCGC	2 cut(s)	592, 637
GluI	GCNGC	3 cut(s)	154, 309, 539
GsaI	CCCAGC	1 cut(s)	386
HaeII	RGCGCY	2 cut(s)	594, 639
HaeIII	GGCC	1 cut(s)	528
HhaI	GCGC	2 cut(s)	593, 638
Hin1I	GRCGYC	1 cut(s)	636
Hin1II	CATG	3 cut(s)	130, 230, 546
Hin6I	GCGC	2 cut(s)	591, 636
HinP1I	GCGC	2 cut(s)	591, 636
HinfI	GANTC	1 cut(s)	158
HphI	GGTGA	1 cut(s)	224
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	2 cut(s)	296, 490
HpyAV	CCTTC	2 cut(s)	172, 621
HpyCH4III	ACNGT	6 cut(s)	29, 329, 366, 421, 614, 648
HpyCH4IV	ACGT	1 cut(s)	555
HpyCH4V	TGCA	1 cut(s)	538
HpyF3I	CTNAG	3 cut(s)	55, 201, 256
HpySE526I	ACGT	1 cut(s)	555
Hsp92I	GRCGYC	1 cut(s)	636
Hsp92II	CATG	3 cut(s)	130, 230, 546
HspAI	GCGC	2 cut(s)	591, 636
KasI	GGCGCC	1 cut(s)	635
Kzo9I	GATC	5 cut(s)	99, 339, 492, 522, 573
LmnI	GCTCC	2 cut(s)	201, 425
LpnPI	CCDG	5 cut(s)	249, 396, 588, 608, 615
Lsp1109I	GCAGC	2 cut(s)	165, 550
LweI	GCATC	2 cut(s)	183, 525
MaeII	ACGT	1 cut(s)	555
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	5 cut(s)	101, 341, 494, 524, 575
MboI	GATC	5 cut(s)	99, 339, 492, 522, 573
MboII	GAAGA	1 cut(s)	599
MflI	RGATCY	1 cut(s)	99
MluCI	AATT	3 cut(s)	72, 240, 459
Mly113I	GGCGCC	1 cut(s)	636
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	4 cut(s)	190, 394, 403, 473
MnlI	CCTC	4 cut(s)	182, 456, 561, 608
MseI	TTAA	1 cut(s)	368
MslI	CAYNNNNRTG	2 cut(s)	131, 434
MspR9I	CCNGG	1 cut(s)	603
MvaI	CCWGG	1 cut(s)	603
NarI	GGCGCC	1 cut(s)	636
NdeII	GATC	5 cut(s)	99, 339, 492, 522, 573
NlaIII	CATG	3 cut(s)	130, 230, 546
NlaIV	GGNNCC	5 cut(s)	101, 232, 269, 427, 637
NmuCI	GTSAC	1 cut(s)	29
PkrI	GCNGC	3 cut(s)	155, 310, 540
PleI	GAGTC	1 cut(s)	152
PluTI	GGCGCC	1 cut(s)	639
PpsI	GAGTC	1 cut(s)	152
PpuMI	RGGWCCY	1 cut(s)	268
Psp5II	RGGWCCY	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	601
PspFI	CCCAGC	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	601
PspN4I	GGNNCC	5 cut(s)	101, 232, 269, 427, 637
PspPI	GGNCC	2 cut(s)	39, 268
PspPPI	RGGWCCY	1 cut(s)	268
PstNI	CAGNNNCTG	1 cut(s)	263
PsuI	RGATCY	1 cut(s)	99
RsaI	GTAC	3 cut(s)	7, 326, 380
RsaNI	GTAC	3 cut(s)	6, 325, 379
RseI	CAYNNNNRTG	2 cut(s)	131, 434
Rsr2I	CGGWCCG	1 cut(s)	39
RsrII	CGGWCCG	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	368
SatI	GCNGC	3 cut(s)	154, 309, 539
Sau3AI	GATC	5 cut(s)	99, 339, 492, 522, 573
Sau96I	GGNCC	2 cut(s)	39, 268
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	603
SetI	ASST	7 cut(s)	262, 293, 388, 558, 572, 600, 607
SfaNI	GCATC	2 cut(s)	183, 525
SfcI	CTRYAG	1 cut(s)	111
SfoI	GGCGCC	1 cut(s)	637
SinI	GGWCC	2 cut(s)	39, 268
SmiMI	CAYNNNNRTG	2 cut(s)	131, 434
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	3 cut(s)	72, 240, 459
SsiI	CCGC	3 cut(s)	37, 309, 453
SspDI	GGCGCC	1 cut(s)	635
StyD4I	CCNGG	1 cut(s)	601
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	6 cut(s)	29, 329, 366, 421, 614, 648
TaiI	ACGT	1 cut(s)	558
TaqI	TCGA	3 cut(s)	24, 122, 572
TaqII	GACCGA	1 cut(s)	56
TasI	AATT	3 cut(s)	72, 240, 459
TatI	WGTACW	1 cut(s)	324
TauI	GCSGC	1 cut(s)	311
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TscAI	CASTG	1 cut(s)	123
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	2 cut(s)	153, 538
Tsp45I	GTSAC	1 cut(s)	29
TspGWI	ACGGA	1 cut(s)	574
TspRI	CASTG	1 cut(s)	123
VpaK11BI	GGWCC	2 cut(s)	39, 268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.