Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0016603

Physical Location & Seq

Genomic Coordinates Forward (+)

2722520 .. 2725704

Gene Structure 3185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1021900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGACGAGGCGGCAGCAGCAGCACTCAAAGCCTTGGAGACCATTCACAGCAAACTGCTGTTCAGCTGAAGACCAAACAATCTTTCGCAACTTCAGCAGGTGCAGGCCATCAAGGTCTGATCTTTCCAAGGATGTTGCTCACCAACTGCCGTCCTTCCGGCGGTTGTCTTTTTCTGATCTCAGCCGTTCTTCGTCCATACGGATTAACGAGGATCTTGCACAGTCTTTTGGGTCGGACTTGTATGATTTTCAACTGAGTGAGCTGCGTGCTGTGACTCAGAATTTTTATGTCAATTTTTTGCTGGGAGAAGGTGGGTTTGGAACCGTGCATAAGGGTTATGTTGATGAGAATTTGAGGCAGGGTTTGAAGGCTCAGGCCGTTGCAGTTAAGCTCCTCGACATTGAAGGCCTACAAGGACACCGCGAATGGCTCGCAGAAGTGATATTTCTTGGGCAGCTGAGGCACCAGAATTTGGTGAAATTGATTGGCTACTGTTGCGAGAACGAAGAAAGACTCCTTGTTTATGAGTTTATGCCTCGAGGCAGCTTAGAGAATCACTTATTCAAAAGGCTTTCAGTATCATTGCCTTGGGCCACAAGATTAAAGATTGCAATAGGAGCAGCCAAAGGCCTTGCTTTCTTGCATGGGGCTGAGACACCTGTTATATATCGGGATTTCAAAACTTCAAATGTCTTGCTAGATTCTGATTTCACAGCAAAGCTGTCAGATTTTGGACTTGCAAAGATGGGGCCTGAAGGATCAGAAACGCATGTCACAACAAGAGTAATGGGTACCTATGGATACGCTGCCCCTGAATATGTCTCAACAGGGCAATTGACAACAAAATGTGACATCTACAGCTTTGGAGTGGTGCTGCTAGAATTGCTAACAGGAAAAAGAGCAATGGATAAATCGAGACCAAAGAGCGAGCAAAATCTGATTGATTGGGCAAAACCTTACCTGACTAGCAGTAGTCGGAGGTTGCGCTATATTATGGACCCGAGACTTGCTGGCCAGTATTCTGTCAAGGGAGCGAAGGAGATTGCCCATCTGGCATTACAATGCATAAGTATGAACCCTAAAGACAGGCCTAAAATGCCAACCATTATCGAGACTCTTGAAAGCCTTCAAAACTTGAAGGACATGGCCGTCGCTTGTGGACATTGGCCGGCATCACCAAAATCTGCTAGAAATGGGGTTTTTGCTAATGCCAGAATGGATGGTCACAGAGTTCGGAATATCAGGAAATCGTCTCCAACTGCAACTGCAAATCAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

427

Amino Acids

47.95

Weight (kDa)

9.48

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	100 - 371	2.1e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	101 - 373	6.7e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016603)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61590
fragaria_vesca	FvH4_5g24390
malus_domestica	MD06G1021900.v1.1
prunus_persica	Prupe.5G016800_v2.0.a1
pyrus_communis	pycom06g01580
rosa_chinensis	RchiOBHm_Chr7g0214781
rosa_laevigata	RLG00000002722
rosa_multiflora	Rmu_sc0021589.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245080
rosa_samantha	Rh7AG284000 Rh7BG274600 Rh7CG303400 Rh7DG287300
rosa_wichuraiana	Rw7G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	87
AasI	GACNNNNNNGTC	1 cut(s)	1148
AbsI	CCTCGAGG	1 cut(s)	537
Acc36I	ACCTGC	1 cut(s)	87
Acc65I	GGTACC	1 cut(s)	791
AccB1I	GGYRCC	2 cut(s)	462, 791
AccB7I	CCANNNNNTGG	1 cut(s)	472
AccII	CGCG	1 cut(s)	423
AciI	CCGC	3 cut(s)	10, 160, 421
AclWI	GGATC	2 cut(s)	219, 766
AcoI	YGGCCR	3 cut(s)	1012, 1146, 1166
AcsI	RAATTY	3 cut(s)	280, 349, 469
AcuI	CTGAAG	3 cut(s)	76, 87, 774
AfaI	GTAC	1 cut(s)	793
AfiI	CCNNNNNNNGG	2 cut(s)	159, 472
AgsI	TTSAA	9 cut(s)	251, 367, 404, 565, 679, 687, 1121, 1130, 1138
AjuI	GAANNNNNNNTTGG	4 cut(s)	66, 98, 300, 332
AluBI	AGCT	7 cut(s)	65, 262, 391, 457, 546, 721, 861
AluI	AGCT	7 cut(s)	65, 262, 391, 457, 546, 721, 861
Alw26I	GTCTC	7 cut(s)	31, 647, 826, 910, 997, 1106, 1257
AlwI	GGATC	2 cut(s)	219, 766
Ama87I	CYCGRG	2 cut(s)	537, 1000
ApeKI	GCWGC	9 cut(s)	13, 16, 19, 262, 454, 543, 620, 806, 874
ApoI	RAATTY	3 cut(s)	280, 349, 469
Asp700I	GAANNNNTTC	1 cut(s)	1125
Asp718I	GGTACC	1 cut(s)	791
AspLEI	GCGC	1 cut(s)	987
AspS9I	GGNCC	3 cut(s)	591, 749, 997
AsuHPI	GGTGA	3 cut(s)	131, 487, 1167
AvaI	CYCGRG	2 cut(s)	537, 1000
AvaII	GGWCC	1 cut(s)	997
BalI	TGGCCA	1 cut(s)	1014
BanI	GGYRCC	2 cut(s)	462, 791
BbsI	GAAGAC	1 cut(s)	75
BbvCI	CCTCAGC	1 cut(s)	458
BbvI	GCAGC	9 cut(s)	25, 28, 31, 249, 466, 555, 632, 793, 861
BccI	CCATC	4 cut(s)	115, 739, 1056, 1214
BceAI	ACGGC	4 cut(s)	133, 168, 362, 1133
BcgI	CGANNNNNNTGC	2 cut(s)	197, 231
BciVI	GTATCC	1 cut(s)	794
BcoDI	GTCTC	7 cut(s)	31, 647, 826, 910, 997, 1106, 1257
BfaI	CTAG	4 cut(s)	698, 878, 966, 1188
BfmI	CTRYAG	1 cut(s)	856
BfuAI	ACCTGC	1 cut(s)	87
BfuI	GTATCC	1 cut(s)	794
BglI	GCCNNNNNGGC	1 cut(s)	1052
Bme18I	GGWCC	1 cut(s)	997
BmeT110I	CYCGRG	2 cut(s)	537, 1000
BmgT120I	GGNCC	3 cut(s)	591, 749, 997
BmiI	GGNNCC	5 cut(s)	322, 464, 750, 793, 999
BmsI	GCATC	1 cut(s)	1181
BpiI	GAAGAC	1 cut(s)	75
Bpu10I	CCTNAGC	2 cut(s)	372, 458
BsaI	GGTCTC	2 cut(s)	31, 910
BsaJI	CCNNGG	3 cut(s)	32, 126, 587
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 472
Bse118I	RCCGGY	1 cut(s)	1168
Bse1I	ACTGG	1 cut(s)	1015
Bse3DI	GCAATG	2 cut(s)	581, 909
BseDI	CCNNGG	3 cut(s)	32, 126, 587
BseGI	GGATG	2 cut(s)	136, 1225
BseLI	CCNNNNNNNGG	2 cut(s)	159, 472
BseMI	GCAATG	2 cut(s)	581, 909
BseMII	CTCAG	6 cut(s)	193, 245, 290, 386, 449, 642
BseNI	ACTGG	1 cut(s)	1015
BseRI	GAGGAG	1 cut(s)	383
BseXI	GCAGC	9 cut(s)	25, 28, 31, 249, 466, 555, 632, 793, 861
BseYI	CCCAGC	1 cut(s)	301
BsgI	GTGCAG	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	423
BshNI	GGYRCC	2 cut(s)	462, 791
BsiHKCI	CYCGRG	2 cut(s)	537, 1000
BsiSI	CCGG	2 cut(s)	157, 1169
BslI	CCNNNNNNNGG	2 cut(s)	159, 472
BsmAI	GTCTC	7 cut(s)	31, 647, 826, 910, 997, 1106, 1257
BsmBI	CGTCTC	1 cut(s)	1257
Bso31I	GGTCTC	2 cut(s)	31, 910
BsoBI	CYCGRG	2 cut(s)	537, 1000
Bsp143I	GATC	4 cut(s)	118, 175, 211, 758
BspACI	CCGC	3 cut(s)	10, 160, 421
BspCNI	CTCAG	6 cut(s)	192, 246, 289, 385, 450, 643
BspFNI	CGCG	1 cut(s)	423
BspLI	GGNNCC	5 cut(s)	322, 464, 750, 793, 999
BspMI	ACCTGC	1 cut(s)	87
BspPI	GGATC	2 cut(s)	219, 766
BspT107I	GGYRCC	2 cut(s)	462, 791
BspTNI	GGTCTC	2 cut(s)	31, 910
BsrDI	GCAATG	2 cut(s)	581, 909
BsrFI	RCCGGY	1 cut(s)	1168
BsrI	ACTGG	1 cut(s)	1015
BssAI	RCCGGY	1 cut(s)	1168
BssECI	CCNNGG	3 cut(s)	32, 126, 587
BssMI	GATC	4 cut(s)	118, 175, 211, 758
BssT1I	CCWWGG	3 cut(s)	32, 126, 587
Bst4CI	ACNGT	3 cut(s)	222, 325, 494
BstC8I	GCNNGC	6 cut(s)	104, 267, 432, 929, 1012, 1170
BstDEI	CTNAG	7 cut(s)	179, 254, 276, 372, 458, 547, 651
BstF5I	GGATG	2 cut(s)	136, 1225
BstFNI	CGCG	1 cut(s)	423
BstHHI	GCGC	1 cut(s)	987
BstKTI	GATC	4 cut(s)	121, 178, 214, 761
BstMAI	GTCTC	7 cut(s)	31, 647, 826, 910, 997, 1106, 1257
BstMBI	GATC	4 cut(s)	118, 175, 211, 758
BstNSI	RCATGY	1 cut(s)	773
BstSFI	CTRYAG	1 cut(s)	856
BstUI	CGCG	1 cut(s)	423
BstV1I	GCAGC	9 cut(s)	25, 28, 31, 249, 466, 555, 632, 793, 861
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BsuI	GTATCC	1 cut(s)	794
BtsCI	GGATG	2 cut(s)	136, 1225
BveI	ACCTGC	1 cut(s)	87
Cac8I	GCNNGC	6 cut(s)	104, 267, 432, 929, 1012, 1170
CfoI	GCGC	1 cut(s)	987
Cfr10I	RCCGGY	1 cut(s)	1168
Cfr13I	GGNCC	3 cut(s)	591, 749, 997
Csp6I	GTAC	1 cut(s)	792
CviAII	CATG	3 cut(s)	644, 770, 1144
CviQI	GTAC	1 cut(s)	792
DdeI	CTNAG	7 cut(s)	179, 254, 276, 372, 458, 547, 651
DpnI	GATC	4 cut(s)	120, 177, 213, 760
DpnII	GATC	4 cut(s)	118, 175, 211, 758
DrdI	GACNNNNNNGTC	1 cut(s)	1148
DseDI	GACNNNNNNGTC	1 cut(s)	1148
EaeI	YGGCCR	3 cut(s)	1012, 1146, 1166
Eco130I	CCWWGG	3 cut(s)	32, 126, 587
Eco147I	AGGCCT	3 cut(s)	408, 630, 1090
Eco31I	GGTCTC	2 cut(s)	31, 910
Eco47I	GGWCC	1 cut(s)	997
Eco57I	CTGAAG	3 cut(s)	76, 87, 774
Eco88I	CYCGRG	2 cut(s)	537, 1000
EcoO109I	RGGNCCY	1 cut(s)	749
EcoT14I	CCWWGG	3 cut(s)	32, 126, 587
EcoT22I	ATGCAT	1 cut(s)	1067
ErhI	CCWWGG	3 cut(s)	32, 126, 587
Esp3I	CGTCTC	1 cut(s)	1257
FaeI	CATG	3 cut(s)	647, 773, 1147
FatI	CATG	3 cut(s)	643, 769, 1143
FokI	GGATG	2 cut(s)	143, 1232
FspBI	CTAG	4 cut(s)	698, 878, 966, 1188
GlaI	GCGC	1 cut(s)	986
GsaI	CCCAGC	1 cut(s)	305
HapII	CCGG	2 cut(s)	157, 1169
HhaI	GCGC	1 cut(s)	987
Hin1II	CATG	3 cut(s)	647, 773, 1147
Hin6I	GCGC	1 cut(s)	985
HinP1I	GCGC	1 cut(s)	985
HinfI	GANTC	5 cut(s)	274, 513, 553, 701, 1114
HpaII	CCGG	2 cut(s)	157, 1169
HphI	GGTGA	3 cut(s)	131, 487, 1167
Hpy166II	GTNNAC	1 cut(s)	1160
Hpy188III	TCNNGA	5 cut(s)	671, 915, 1111, 1118, 1243
Hpy8I	GTNNAC	1 cut(s)	1160
Hpy99I	CGWCG	1 cut(s)	1154
HpyAV	CCTTC	8 cut(s)	163, 302, 361, 398, 749, 1030, 1132, 1136
HpyCH4III	ACNGT	3 cut(s)	222, 325, 494
HpyF3I	CTNAG	7 cut(s)	179, 254, 276, 372, 458, 547, 651
Hsp92II	CATG	3 cut(s)	647, 773, 1147
HspAI	GCGC	1 cut(s)	985
KpnI	GGTACC	1 cut(s)	795
KroI	GCCGGC	1 cut(s)	1168
KroNI	GCCGGC	1 cut(s)	1170
Kzo9I	GATC	4 cut(s)	118, 175, 211, 758
LmnI	GCTCC	3 cut(s)	396, 617, 1031
Lsp1109I	GCAGC	9 cut(s)	25, 28, 31, 249, 466, 555, 632, 793, 861
LweI	GCATC	1 cut(s)	1181
MaeI	CTAG	4 cut(s)	698, 878, 966, 1188
MaeIII	GTNAC	4 cut(s)	271, 772, 848, 1223
MalI	GATC	4 cut(s)	120, 177, 213, 760
MboI	GATC	4 cut(s)	118, 175, 211, 758
MboII	GAAGA	3 cut(s)	80, 180, 518
MfeI	CAATTG	1 cut(s)	833
MflI	RGATCY	1 cut(s)	211
MlsI	TGGCCA	1 cut(s)	1014
MluCI	AATT	7 cut(s)	280, 292, 349, 469, 479, 833, 881
MluNI	TGGCCA	1 cut(s)	1014
MlyI	GAGTC	3 cut(s)	268, 507, 1108
MmeI	TCCRAC	3 cut(s)	213, 956, 1280
MnlI	CCTC	7 cut(s)	202, 348, 404, 453, 533, 546, 972
Mox20I	TGGCCA	1 cut(s)	1014
Mph1103I	ATGCAT	1 cut(s)	1067
MroNI	GCCGGC	1 cut(s)	1168
MroXI	GAANNNNTTC	1 cut(s)	1125
MscI	TGGCCA	1 cut(s)	1014
MseI	TTAA	3 cut(s)	204, 387, 602
MslI	CAYNNNNRTG	2 cut(s)	1060, 1070
Msp20I	TGGCCA	1 cut(s)	1014
MspA1I	CMGCKG	2 cut(s)	65, 457
MspI	CCGG	2 cut(s)	157, 1169
MunI	CAATTG	1 cut(s)	833
MvnI	CGCG	1 cut(s)	423
NaeI	GCCGGC	1 cut(s)	1170
NdeII	GATC	4 cut(s)	118, 175, 211, 758
NgoMIV	GCCGGC	1 cut(s)	1168
NlaIII	CATG	3 cut(s)	647, 773, 1147
NlaIV	GGNNCC	5 cut(s)	322, 464, 750, 793, 999
NmuCI	GTSAC	4 cut(s)	271, 772, 848, 1223
NsiI	ATGCAT	1 cut(s)	1067
NspI	RCATGY	1 cut(s)	773
PaeR7I	CTCGAG	1 cut(s)	537
PaqCI	CACCTGC	1 cut(s)	87
PceI	AGGCCT	3 cut(s)	408, 630, 1090
PdiI	GCCGGC	1 cut(s)	1170
PdmI	GAANNNNTTC	1 cut(s)	1125
PfeI	GAWTC	2 cut(s)	553, 701
PflMI	CCANNNNNTGG	1 cut(s)	472
PleI	GAGTC	3 cut(s)	268, 507, 1108
PpsI	GAGTC	3 cut(s)	268, 507, 1108
PspFI	CCCAGC	1 cut(s)	301
PspN4I	GGNNCC	5 cut(s)	322, 464, 750, 793, 999
PspPI	GGNCC	3 cut(s)	591, 749, 997
PspXI	VCTCGAGB	1 cut(s)	537
PsuI	RGATCY	1 cut(s)	211
PvuII	CAGCTG	2 cut(s)	65, 457
RsaI	GTAC	1 cut(s)	793
RsaNI	GTAC	1 cut(s)	792
RseI	CAYNNNNRTG	2 cut(s)	1060, 1070
SaqAI	TTAA	3 cut(s)	204, 387, 602
Sau3AI	GATC	4 cut(s)	118, 175, 211, 758
Sau96I	GGNCC	3 cut(s)	591, 749, 997
SchI	GAGTC	3 cut(s)	268, 507, 1108
SfaNI	GCATC	1 cut(s)	1181
SfcI	CTRYAG	1 cut(s)	856
Sfr274I	CTCGAG	1 cut(s)	537
SinI	GGWCC	1 cut(s)	997
SlaI	CTCGAG	1 cut(s)	537
SmiMI	CAYNNNNRTG	2 cut(s)	1060, 1070
SmlI	CTYRAG	1 cut(s)	537
SmoI	CTYRAG	1 cut(s)	537
Sse9I	AATT	7 cut(s)	280, 292, 349, 469, 479, 833, 881
SseBI	AGGCCT	3 cut(s)	408, 630, 1090
SsiI	CCGC	3 cut(s)	10, 160, 421
SspMI	CTAG	4 cut(s)	698, 878, 966, 1188
StuI	AGGCCT	3 cut(s)	408, 630, 1090
StyI	CCWWGG	3 cut(s)	32, 126, 587
TaaI	ACNGT	3 cut(s)	222, 325, 494
TaqI	TCGA	4 cut(s)	396, 538, 914, 1110
TasI	AATT	7 cut(s)	280, 292, 349, 469, 479, 833, 881
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	2 cut(s)	553, 701
Tru1I	TTAA	3 cut(s)	204, 387, 602
Tru9I	TTAA	3 cut(s)	204, 387, 602
TseFI	GTSAC	4 cut(s)	271, 772, 848, 1223
TseI	GCWGC	9 cut(s)	13, 16, 19, 262, 454, 543, 620, 806, 874
Tsp45I	GTSAC	4 cut(s)	271, 772, 848, 1223
TspDTI	ATGAA	1 cut(s)	1088
TspGWI	ACGGA	1 cut(s)	214
Van91I	CCANNNNNTGG	1 cut(s)	472
VpaK11BI	GGWCC	1 cut(s)	997
XapI	RAATTY	3 cut(s)	280, 349, 469
XceI	RCATGY	1 cut(s)	773
XhoI	CTCGAG	1 cut(s)	537
XmnI	GAANNNNTTC	1 cut(s)	1125
XspI	CTAG	4 cut(s)	698, 878, 966, 1188
Zsp2I	ATGCAT	1 cut(s)	1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.