MD06G1065900.v1.1

Photosystem II protein J

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0021992
Physical Location & Seq
Forward (+)
14028192 .. 14028571
380 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1065900.v1.1.491

Sequence Viewer

Length: 210 bp
ATGCATAAAGAAGATAACAGATACAAGAAACAACATGACAGAGTTGAATTGAATCATACCAGTCTCTACTGGGGGAAAGTAGGACAAATGGCTGATACTACTGGAAGGATTCCTCTTTGGATAATAGGTACTGCAGCCGGTATTCTTGTGATCGGTTTAATCGGTATTTTCTTTTATGGTTCATATTCCGGATTAGGTTCATCCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
PsbJ

Protein Analysis

70

Amino Acids

7.68

Weight (kDa)

9.16

Isoelectric Point (pI)

23.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbJ PF01788 32 - 69 1e-21 PsbJ
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021992)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG00550
malus_domestica MD06G1065900.v1.1
rosa_chinensis RchiOBHm_Chr7g0202431 RchiOBHm_CPg0502061

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 188
AfaI GTAC 1 cut(s) 130
AgsI TTSAA 2 cut(s) 47, 52
Alw26I GTCTC 1 cut(s) 68
Aor13HI TCCGGA 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 146
BcoDI GTCTC 1 cut(s) 68
BfmI CTRYAG 1 cut(s) 132
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
BmrI ACTGGG 1 cut(s) 79
BmuI ACTGGG 1 cut(s) 79
BsaWI WCCGGW 1 cut(s) 188
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 3 cut(s) 60, 74, 106
BseAI TCCGGA 1 cut(s) 188
BseGI GGATG 1 cut(s) 200
BseNI ACTGG 3 cut(s) 60, 74, 106
BseXI GCAGC 1 cut(s) 146
BsiSI CCGG 2 cut(s) 138, 189
BsmAI GTCTC 1 cut(s) 68
Bsp13I TCCGGA 1 cut(s) 188
Bsp143I GATC 1 cut(s) 150
BspEI TCCGGA 1 cut(s) 188
BspMAI CTGCAG 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 137
BsrI ACTGG 3 cut(s) 60, 74, 106
BssAI RCCGGY 1 cut(s) 137
BssMI GATC 1 cut(s) 150
BstF5I GGATG 1 cut(s) 200
BstKTI GATC 1 cut(s) 153
BstMAI GTCTC 1 cut(s) 68
BstMBI GATC 1 cut(s) 150
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 146
BtsCI GGATG 1 cut(s) 200
Cfr10I RCCGGY 1 cut(s) 137
Csp6I GTAC 1 cut(s) 129
CviAII CATG 1 cut(s) 35
CviJI RGCY 2 cut(s) 92, 137
CviKI_1 RGCY 2 cut(s) 92, 137
CviQI GTAC 1 cut(s) 129
DpnI GATC 1 cut(s) 152
DpnII GATC 1 cut(s) 150
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 38
FaiI YATR 5 cut(s) 6, 36, 57, 177, 184
FatI CATG 1 cut(s) 34
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 1 cut(s) 187
Fsp4HI GCNGC 1 cut(s) 135
GluI GCNGC 1 cut(s) 135
HapII CCGG 2 cut(s) 138, 189
Hin1II CATG 1 cut(s) 38
HinfI GANTC 2 cut(s) 52, 109
HpaII CCGG 2 cut(s) 138, 189
Hpy188III TCNNGA 1 cut(s) 189
HpyAV CCTTC 1 cut(s) 99
HpyCH4V TGCA 2 cut(s) 4, 134
Hsp92II CATG 1 cut(s) 38
Kpn2I TCCGGA 1 cut(s) 188
Kzo9I GATC 1 cut(s) 150
LpnPI CCDG 5 cut(s) 55, 73, 87, 151, 202
Lsp1109I GCAGC 1 cut(s) 146
MalI GATC 1 cut(s) 152
MboI GATC 1 cut(s) 150
MboII GAAGA 1 cut(s) 23
MluCI AATT 1 cut(s) 47
MnlI CCTC 1 cut(s) 123
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 188
MseI TTAA 1 cut(s) 158
MspI CCGG 2 cut(s) 138, 189
NdeII GATC 1 cut(s) 150
NlaIII CATG 1 cut(s) 38
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 2 cut(s) 52, 109
PkrI GCNGC 1 cut(s) 136
PstI CTGCAG 1 cut(s) 136
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
SaqAI TTAA 1 cut(s) 158
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 1 cut(s) 150
SetI ASST 2 cut(s) 130, 199
SfcI CTRYAG 1 cut(s) 132
SgeI CNNG 8 cut(s) 37, 47, 72, 82, 114, 150, 158, 201
Sse9I AATT 1 cut(s) 47
TasI AATT 1 cut(s) 47
TfiI GAWTC 2 cut(s) 52, 109
Tru1I TTAA 1 cut(s) 158
Tru9I TTAA 1 cut(s) 158
TseI GCWGC 1 cut(s) 134
TspDTI ATGAA 2 cut(s) 171, 189
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.