RchiOBHm_Chr7g0202431

Photosystem II protein J

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
20049781 .. 20050155
375 bp
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UTR
Exon/CDS
Intron
PRQ18122

Sequence Viewer

Length: 198 bp
ATGACACAATCAAACCCGAACGAACAAAGTGTTGAATTGAATCGTACCAGTCTCTACTGGGGGAAAGTCGGGCAAATGGCCGATACTACTGGAAGGATTCCTCTTTGGATAATAGGTACTGTAACCGGTATTGTTGTAATTGGTTTAATTGGTATTTTCTTTTATGGTTCATATTCCGGATTAGGTTCATCTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

65

Amino Acids

7.0

Weight (kDa)

5.94

Isoelectric Point (pI)

16.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbL PF02419 3 - 21 1.9e-09 PsbL protein
PsbJ PF01788 28 - 65 3.1e-21 PsbJ
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0021992)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG00550
malus_domestica MD06G1065900.v1.1
rosa_chinensis RchiOBHm_Chr7g0202431 RchiOBHm_CPg0502061

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 176
AcoI YGGCCR 1 cut(s) 78
AfaI GTAC 2 cut(s) 46, 118
AgeI ACCGGT 1 cut(s) 125
AgsI TTSAA 2 cut(s) 35, 40
Alw26I GTCTC 1 cut(s) 56
Aor13HI TCCGGA 1 cut(s) 176
AoxI GGCC 1 cut(s) 78
AsiGI ACCGGT 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 56
BmrI ACTGGG 1 cut(s) 67
BmuI ACTGGG 1 cut(s) 67
BsaWI WCCGGW 2 cut(s) 125, 176
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 3 cut(s) 48, 62, 94
BseAI TCCGGA 1 cut(s) 176
BseNI ACTGG 3 cut(s) 48, 62, 94
BshFI GGCC 1 cut(s) 80
BshTI ACCGGT 1 cut(s) 125
BsiSI CCGG 2 cut(s) 126, 177
BsmAI GTCTC 1 cut(s) 56
BsnI GGCC 1 cut(s) 80
Bsp13I TCCGGA 1 cut(s) 176
BspANI GGCC 1 cut(s) 80
BspEI TCCGGA 1 cut(s) 176
BsrFI RCCGGY 1 cut(s) 125
BsrI ACTGG 3 cut(s) 48, 62, 94
BssAI RCCGGY 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 121
BstMAI GTCTC 1 cut(s) 56
BsuRI GGCC 1 cut(s) 80
Cfr10I RCCGGY 1 cut(s) 125
Csp6I GTAC 2 cut(s) 45, 117
CspAI ACCGGT 1 cut(s) 125
CviJI RGCY 1 cut(s) 80
CviKI_1 RGCY 1 cut(s) 80
CviQI GTAC 2 cut(s) 45, 117
EaeI YGGCCR 1 cut(s) 78
FaiI YATR 2 cut(s) 165, 172
HaeIII GGCC 1 cut(s) 80
HapII CCGG 2 cut(s) 126, 177
HinfI GANTC 2 cut(s) 40, 97
HpaII CCGG 2 cut(s) 126, 177
Hpy188III TCNNGA 1 cut(s) 177
HpyAV CCTTC 1 cut(s) 87
HpyCH4III ACNGT 1 cut(s) 121
Kpn2I TCCGGA 1 cut(s) 176
LpnPI CCDG 5 cut(s) 43, 61, 75, 139, 190
MaeIII GTNAC 1 cut(s) 121
MluCI AATT 3 cut(s) 35, 138, 147
MnlI CCTC 1 cut(s) 111
MroI TCCGGA 1 cut(s) 176
MseI TTAA 1 cut(s) 146
MspI CCGG 2 cut(s) 126, 177
PfeI GAWTC 2 cut(s) 40, 97
PinAI ACCGGT 1 cut(s) 125
RsaI GTAC 2 cut(s) 46, 118
RsaNI GTAC 2 cut(s) 45, 117
SaqAI TTAA 1 cut(s) 146
SetI ASST 2 cut(s) 118, 187
SgeI CNNG 7 cut(s) 28, 60, 70, 82, 102, 138, 189
Sse9I AATT 3 cut(s) 35, 138, 147
TaaI ACNGT 1 cut(s) 121
TasI AATT 3 cut(s) 35, 138, 147
TfiI GAWTC 2 cut(s) 40, 97
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TspDTI ATGAA 2 cut(s) 159, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.