MD06G1124700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0018303
Physical Location & Seq
Reverse (-)
26692794 .. 26692985
192 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1124700.v1.1.491

Sequence Viewer

Length: 192 bp
ATGATTTTGGTGGCGGTGGTGACGGAGCTGATGAAGGAGTACACGGTGTTGCTGGCGAGGGTTTTGGAGCATTTGTTTCACTCGGCGCCTTTTCCGAGGAGGGTTCGGTTTCTGATCCTGAGGAATCTTCCGTTCGCTTCTACCTACCCGCAACATCCTCCTCCTCCTTTGATTGGAGCTCCTGCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.12

Weight (kDa)

10.25

Isoelectric Point (pI)

61.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33055
malus_domestica MD00G1096700.v1.1 MD06G1124700.v1.1
prunus_persica Prupe.5G135300_v2.0.a1
pyrus_communis pycom06g11530 pycom14g11680
rosa_chinensis RchiOBHm_Chr7g0187861
rosa_roxburghii Rroxscaffold_3G00267000
rosa_rugosa Rorug06G0484800
rosa_wichuraiana Rw7G007770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 85
AciI CCGC 2 cut(s) 14, 149
AclWI GGATC 1 cut(s) 109
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 173
AluBI AGCT 2 cut(s) 28, 179
AluI AGCT 2 cut(s) 28, 179
Alw21I GWGCWC 1 cut(s) 181
AlwI GGATC 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 185
AspLEI GCGC 1 cut(s) 88
AsuHPI GGTGA 1 cut(s) 31
AxyI CCTNAGG 1 cut(s) 119
BanI GGYRCC 1 cut(s) 85
BanII GRGCYC 1 cut(s) 181
Bbv12I GWGCWC 1 cut(s) 181
BbvI GCAGC 1 cut(s) 172
BfoI RGCGCY 1 cut(s) 89
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 95
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse21I CCTNAGG 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 173
BseMII CTCAG 1 cut(s) 110
BseRI GAGGAG 3 cut(s) 112, 150, 153
BseXI GCAGC 1 cut(s) 172
BshNI GGYRCC 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 181
BslI CCNNNNNNNGG 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 181
Bsp143I GATC 1 cut(s) 114
BspACI CCGC 2 cut(s) 14, 149
BspCNI CTCAG 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 87
BspPI GGATC 1 cut(s) 109
BspT107I GGYRCC 1 cut(s) 85
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 1 cut(s) 114
BssNI GRCGYC 1 cut(s) 86
Bst4CI ACNGT 1 cut(s) 46
BstACI GRCGYC 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 119
BstF5I GGATG 1 cut(s) 154
BstH2I RGCGCY 1 cut(s) 89
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 1 cut(s) 117
BstMBI GATC 1 cut(s) 114
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstV1I GCAGC 1 cut(s) 172
Bsu36I CCTNAGG 1 cut(s) 119
BtsCI GGATG 1 cut(s) 154
Cac8I GCNNGC 1 cut(s) 54
CfoI GCGC 1 cut(s) 88
Csp6I GTAC 1 cut(s) 40
CviJI RGCY 2 cut(s) 28, 179
CviKI_1 RGCY 2 cut(s) 28, 179
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 1 cut(s) 119
DinI GGCGCC 1 cut(s) 87
DpnI GATC 1 cut(s) 116
DpnII GATC 1 cut(s) 114
Ecl136II GAGCTC 1 cut(s) 179
Eco24I GRGCYC 1 cut(s) 181
Eco53kI GAGCTC 1 cut(s) 179
Eco81I CCTNAGG 1 cut(s) 119
EcoICRI GAGCTC 1 cut(s) 179
EcoT38I GRGCYC 1 cut(s) 181
EgeI GGCGCC 1 cut(s) 87
EheI GGCGCC 1 cut(s) 87
FauI CCCGC 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 1 cut(s) 141
FriOI GRGCYC 1 cut(s) 181
Fsp4HI GCNGC 1 cut(s) 186
GlaI GCGC 1 cut(s) 87
GluI GCNGC 1 cut(s) 186
HaeII RGCGCY 1 cut(s) 89
HhaI GCGC 1 cut(s) 88
Hin1I GRCGYC 1 cut(s) 86
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HinfI GANTC 1 cut(s) 124
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 42
Hpy188I TCNGA 2 cut(s) 96, 114
Hpy188III TCNNGA 1 cut(s) 118
Hpy8I GTNNAC 1 cut(s) 42
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 1 cut(s) 119
Hsp92I GRCGYC 1 cut(s) 86
HspAI GCGC 1 cut(s) 86
KasI GGCGCC 1 cut(s) 85
Kzo9I GATC 1 cut(s) 114
LmnI GCTCC 4 cut(s) 25, 67, 176, 184
LpnPI CCDG 2 cut(s) 38, 131
Lsp1109I GCAGC 1 cut(s) 172
MaeIII GTNAC 1 cut(s) 19
MalI GATC 1 cut(s) 116
MboI GATC 1 cut(s) 114
MboII GAAGA 1 cut(s) 119
MhlI GDGCHC 1 cut(s) 181
Mly113I GGCGCC 1 cut(s) 86
MnlI CCTC 7 cut(s) 51, 90, 93, 114, 168, 171, 174
MseI TTAA 1 cut(s) 190
MwoI GCNNNNNNNGC 1 cut(s) 185
NarI GGCGCC 1 cut(s) 86
NdeII GATC 1 cut(s) 114
NlaIV GGNNCC 1 cut(s) 87
NmeAIII GCCGAG 1 cut(s) 62
NmuCI GTSAC 1 cut(s) 19
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 1 cut(s) 187
PluTI GGCGCC 1 cut(s) 89
Psp124BI GAGCTC 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 87
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
SacI GAGCTC 1 cut(s) 181
SaqAI TTAA 1 cut(s) 190
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 1 cut(s) 114
SduI GDGCHC 1 cut(s) 181
SetI ASST 3 cut(s) 30, 146, 181
SfoI GGCGCC 1 cut(s) 87
SgeI CNNG 7 cut(s) 55, 65, 69, 94, 108, 130, 160
SsiI CCGC 2 cut(s) 14, 149
SspDI GGCGCC 1 cut(s) 85
SstI GAGCTC 1 cut(s) 181
TaaI ACNGT 1 cut(s) 46
TatI WGTACW 1 cut(s) 39
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 1 cut(s) 190
Tru9I TTAA 1 cut(s) 190
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 47
TspGWI ACGGA 2 cut(s) 38, 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.