RchiOBHm_Chr7g0187861

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0018303
Physical Location & Seq
Reverse (-)
7590477 .. 7591376
900 bp
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UTR
Exon/CDS
Intron
PRQ16773

Sequence Viewer

Length: 204 bp
ATGATACTGGTGGCGATAGTGGCGGAGATGATGGAGGAGTACACGGCGTTGCTGGCCAGGATTCTGGAGCACATGTTCCAGTCTGCACCTTTTCCGAGGAGGGTTCGGTTTCTGATTCTCAGAAACCTTCCTTTTGTGTCCACATACCCTCTTCTTCCTCCTCCTCCTCCTCGTCCTTTGTTTGGATCCCCTGCTGCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.58

Weight (kDa)

9.95

Isoelectric Point (pI)

79.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33055
malus_domestica MD00G1096700.v1.1 MD06G1124700.v1.1
prunus_persica Prupe.5G135300_v2.0.a1
pyrus_communis pycom06g11530 pycom14g11680
rosa_chinensis RchiOBHm_Chr7g0187861
rosa_roxburghii Rroxscaffold_3G00267000
rosa_rugosa Rorug06G0484800
rosa_wichuraiana Rw7G007770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 23
AclWI GGATC 2 cut(s) 180, 193
AcoI YGGCCR 1 cut(s) 54
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 182
AflIII ACRYGT 1 cut(s) 72
AjnI CCWGG 1 cut(s) 56
AloI GAACNNNNNNTCC 2 cut(s) 59, 91
Alw21I GWGCWC 1 cut(s) 72
AlwI GGATC 2 cut(s) 180, 193
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 2 cut(s) 194, 197
BalI TGGCCA 1 cut(s) 56
BamHI GGATCC 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 2 cut(s) 181, 184
BccI CCATC 1 cut(s) 25
BceAI ACGGC 1 cut(s) 60
BciT130I CCWGG 1 cut(s) 58
BisI GCNGC 2 cut(s) 195, 198
BlsI GCNGC 2 cut(s) 196, 199
Bme1390I CCNGG 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 58
BpmI CTGGAG 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 95
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse1I ACTGG 2 cut(s) 12, 79
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 1 cut(s) 95
BseLI CCNNNNNNNGG 1 cut(s) 182
BseMII CTCAG 1 cut(s) 133
BseNI ACTGG 2 cut(s) 12, 79
BseRI GAGGAG 6 cut(s) 50, 112, 150, 153, 156, 159
BseXI GCAGC 2 cut(s) 181, 184
BsgI GTGCAG 1 cut(s) 69
BshFI GGCC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 182
BsnI GGCC 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 1 cut(s) 185
BspACI CCGC 1 cut(s) 23
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 187
BspPI GGATC 2 cut(s) 180, 193
BsrI ACTGG 2 cut(s) 12, 79
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 1 cut(s) 185
Bst2UI CCWGG 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 2 cut(s) 119, 201
BstKTI GATC 1 cut(s) 188
BstMBI GATC 1 cut(s) 185
BstMWI GCNNNNNNNGC 2 cut(s) 20, 53
BstNI CCWGG 1 cut(s) 58
BstNSI RCATGY 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 56
BstV1I GCAGC 2 cut(s) 181, 184
BstX2I RGATCY 1 cut(s) 185
BstXI CCANNNNNNTGG 1 cut(s) 64
BstYI RGATCY 1 cut(s) 185
BsuRI GGCC 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 54
Csp6I GTAC 1 cut(s) 40
CviAII CATG 1 cut(s) 73
CviJI RGCY 1 cut(s) 56
CviKI_1 RGCY 1 cut(s) 56
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 2 cut(s) 119, 201
DpnI GATC 1 cut(s) 187
DpnII GATC 1 cut(s) 185
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
EciI GGCGGA 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 56
FaeI CATG 1 cut(s) 76
FaiI YATR 2 cut(s) 74, 145
FatI CATG 1 cut(s) 72
Fnu4HI GCNGC 2 cut(s) 195, 198
Fsp4HI GCNGC 2 cut(s) 195, 198
GluI GCNGC 2 cut(s) 195, 198
GsuI CTGGAG 1 cut(s) 86
HaeIII GGCC 1 cut(s) 56
Hin1II CATG 1 cut(s) 76
HinfI GANTC 2 cut(s) 61, 115
Hpy166II GTNNAC 2 cut(s) 42, 141
Hpy188I TCNGA 3 cut(s) 96, 114, 122
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 2 cut(s) 42, 141
HpyAV CCTTC 1 cut(s) 137
HpyCH4V TGCA 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 53
HpyF3I CTNAG 2 cut(s) 119, 201
Hsp92II CATG 1 cut(s) 76
Kzo9I GATC 1 cut(s) 185
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 5 cut(s) 38, 43, 50, 70, 92
Lsp1109I GCAGC 2 cut(s) 181, 184
MalI GATC 1 cut(s) 187
MboI GATC 1 cut(s) 185
MboII GAAGA 2 cut(s) 143, 146
MflI RGATCY 1 cut(s) 185
MhlI GDGCHC 1 cut(s) 72
MlsI TGGCCA 1 cut(s) 56
MluNI TGGCCA 1 cut(s) 56
MnlI CCTC 9 cut(s) 28, 90, 93, 159, 168, 171, 174, 177, 180
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
Msp20I TGGCCA 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 58
MvaI CCWGG 1 cut(s) 58
MwoI GCNNNNNNNGC 2 cut(s) 20, 53
NdeII GATC 1 cut(s) 185
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 1 cut(s) 187
NspI RCATGY 1 cut(s) 76
PciI ACATGT 1 cut(s) 72
PfeI GAWTC 2 cut(s) 61, 115
PkrI GCNGC 2 cut(s) 196, 199
PscI ACATGT 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PspN4I GGNNCC 1 cut(s) 187
PsuI RGATCY 1 cut(s) 185
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
SatI GCNGC 2 cut(s) 195, 198
Sau3AI GATC 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 58
SduI GDGCHC 1 cut(s) 72
SetI ASST 2 cut(s) 91, 129
SsiI CCGC 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 56
TatI WGTACW 1 cut(s) 39
TfiI GAWTC 2 cut(s) 61, 115
TseI GCWGC 2 cut(s) 194, 197
XceI RCATGY 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.