Rorug06G0484800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0018303
Physical Location & Seq
Forward (+)
60464227 .. 60465806
1580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0484800.1

Sequence Viewer

Length: 279 bp
ATGCCAGTGTGGCTGGGAATTTCAGGCAGCGCTGCTCCACAGAACACCCAATCTGGAAGGGTTTGTGAACAATACAAATCGTTAAGTGGAACGCTTAGAGACCCAAGTTGTGACTTTAGTGAGAGACAGAGAGAGAAGAGTGCTAATAAGGCTTCTGGCCAAGAAGAAGAGGAGGGCAGTATGGCGCCGTTTCCTGAAAAGAGTTCTTTTGGAGTTTTGATATTGAGTTTCTTTTATGTCGACCAAGATGGTACAACCAACAAAATAATCCCATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.05

Weight (kDa)

4.82

Isoelectric Point (pI)

68.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G33055
malus_domestica MD00G1096700.v1.1 MD06G1124700.v1.1
prunus_persica Prupe.5G135300_v2.0.a1
pyrus_communis pycom06g11530 pycom14g11680
rosa_chinensis RchiOBHm_Chr7g0187861
rosa_roxburghii Rroxscaffold_3G00267000
rosa_rugosa Rorug06G0484800
rosa_wichuraiana Rw7G007770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 184
AccI GTMKAC 1 cut(s) 240
AcoI YGGCCR 1 cut(s) 157
AcsI RAATTY 1 cut(s) 18
AcyI GRCGYC 1 cut(s) 185
AfaI GTAC 1 cut(s) 253
AfeI AGCGCT 1 cut(s) 31
Alw26I GTCTC 2 cut(s) 93, 118
Aor51HI AGCGCT 1 cut(s) 31
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 2 cut(s) 27, 32
ApoI RAATTY 1 cut(s) 18
AspLEI GCGC 2 cut(s) 32, 187
BalI TGGCCA 1 cut(s) 159
BanI GGYRCC 1 cut(s) 184
BbvI GCAGC 2 cut(s) 19, 39
BccI CCATC 1 cut(s) 242
BceAI ACGGC 1 cut(s) 172
BcoDI GTCTC 2 cut(s) 93, 118
BfoI RGCGCY 2 cut(s) 33, 188
BglI GCCNNNNNGGC 1 cut(s) 10
BisI GCNGC 2 cut(s) 28, 33
BlsI GCNGC 2 cut(s) 29, 34
BmiI GGNNCC 1 cut(s) 186
BsaHI GRCGYC 1 cut(s) 185
BsaI GGTCTC 1 cut(s) 93
Bse1I ACTGG 1 cut(s) 5
BseNI ACTGG 1 cut(s) 5
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 2 cut(s) 19, 39
BseYI CCCAGC 1 cut(s) 13
BshFI GGCC 1 cut(s) 159
BshNI GGYRCC 1 cut(s) 184
BsmAI GTCTC 2 cut(s) 93, 118
BsnI GGCC 1 cut(s) 159
Bso31I GGTCTC 1 cut(s) 93
BspANI GGCC 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 184
BspTNI GGTCTC 1 cut(s) 93
BsrI ACTGG 1 cut(s) 5
BssNI GRCGYC 1 cut(s) 185
Bst6I CTCTTC 2 cut(s) 131, 162
BstACI GRCGYC 1 cut(s) 185
BstDEI CTNAG 1 cut(s) 95
BstH2I RGCGCY 2 cut(s) 33, 188
BstHHI GCGC 2 cut(s) 32, 187
BstMAI GTCTC 2 cut(s) 93, 118
BstMWI GCNNNNNNNGC 2 cut(s) 10, 149
BstV1I GCAGC 2 cut(s) 19, 39
BsuRI GGCC 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 12
CfoI GCGC 2 cut(s) 32, 187
Csp6I GTAC 1 cut(s) 252
CviAII CATG 1 cut(s) 273
CviJI RGCY 3 cut(s) 13, 152, 159
CviKI_1 RGCY 3 cut(s) 13, 152, 159
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 1 cut(s) 95
DinI GGCGCC 1 cut(s) 186
EaeI YGGCCR 1 cut(s) 157
Eam1104I CTCTTC 2 cut(s) 131, 162
EarI CTCTTC 2 cut(s) 131, 162
Eco31I GGTCTC 1 cut(s) 93
Eco47III AGCGCT 1 cut(s) 31
EgeI GGCGCC 1 cut(s) 186
EheI GGCGCC 1 cut(s) 186
FaeI CATG 1 cut(s) 276
FaiI YATR 3 cut(s) 182, 237, 274
FatI CATG 1 cut(s) 272
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 2 cut(s) 28, 33
Fsp4HI GCNGC 2 cut(s) 28, 33
GlaI GCGC 2 cut(s) 31, 186
GluI GCNGC 2 cut(s) 28, 33
GsaI CCCAGC 1 cut(s) 17
HaeII RGCGCY 2 cut(s) 33, 188
HaeIII GGCC 1 cut(s) 159
HhaI GCGC 2 cut(s) 32, 187
Hin1I GRCGYC 1 cut(s) 185
Hin1II CATG 1 cut(s) 276
Hin6I GCGC 2 cut(s) 30, 185
HinP1I GCGC 2 cut(s) 30, 185
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
Hpy166II GTNNAC 2 cut(s) 68, 241
Hpy188III TCNNGA 2 cut(s) 54, 194
Hpy8I GTNNAC 2 cut(s) 68, 241
HpyAV CCTTC 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 149
HpyF3I CTNAG 1 cut(s) 95
Hsp92I GRCGYC 1 cut(s) 185
Hsp92II CATG 1 cut(s) 276
HspAI GCGC 2 cut(s) 30, 185
KasI GGCGCC 1 cut(s) 184
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 5 cut(s) 9, 18, 39, 141, 207
Lsp1109I GCAGC 2 cut(s) 19, 39
MaeIII GTNAC 1 cut(s) 110
MboII GAAGA 3 cut(s) 148, 176, 179
MlsI TGGCCA 1 cut(s) 159
MluCI AATT 1 cut(s) 18
MluNI TGGCCA 1 cut(s) 159
Mly113I GGCGCC 1 cut(s) 185
MnlI CCTC 2 cut(s) 163, 166
Mox20I TGGCCA 1 cut(s) 159
MscI TGGCCA 1 cut(s) 159
MseI TTAA 1 cut(s) 83
Msp20I TGGCCA 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 10, 149
NarI GGCGCC 1 cut(s) 185
NlaIII CATG 1 cut(s) 276
NlaIV GGNNCC 1 cut(s) 186
NmuCI GTSAC 1 cut(s) 110
PkrI GCNGC 2 cut(s) 29, 34
PluTI GGCGCC 1 cut(s) 188
PspFI CCCAGC 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 186
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
SalI GTCGAC 1 cut(s) 239
SaqAI TTAA 1 cut(s) 83
SatI GCNGC 2 cut(s) 28, 33
SfoI GGCGCC 1 cut(s) 186
SgeI CNNG 9 cut(s) 17, 26, 36, 66, 117, 168, 173, 206, 257
Sse9I AATT 1 cut(s) 18
SspDI GGCGCC 1 cut(s) 184
TaqI TCGA 1 cut(s) 240
TasI AATT 1 cut(s) 18
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
TscAI CASTG 1 cut(s) 12
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 2 cut(s) 27, 32
Tsp45I GTSAC 1 cut(s) 110
TspRI CASTG 1 cut(s) 12
XapI RAATTY 1 cut(s) 18
XmiI GTMKAC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.