MD06G1145100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0021130
Physical Location & Seq
Forward (+)
28794385 .. 28795951
1567 bp
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UTR
Exon/CDS
Intron
MD06G1145100.v1.1.491

Sequence Viewer

Length: 156 bp
ATGTCTTCCTTTATCAACCCCTGTGACAATAAAAGTTGCAGAACCGAACACCTAGGAAGAATTCTCTTCTCCATGCTGAGCAGCAAAAGGTTTGGATGCTTCGCAACCGTTGACGGCTTCAAATTCAACTTATTCACGAAAAAATCCATCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

52

Amino Acids

5.83

Weight (kDa)

9.65

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021130)

Species Orthologous Gene IDs
malus_domestica MD06G1145100.v1.1
prunus_persica Prupe.2G036600_v2.0.a1 Prupe.2G036700_v2.0.a1 Prupe.2G037300_v2.0.a1 Prupe.7G038100_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 60, 122
AgsI TTSAA 2 cut(s) 121, 127
ApeKI GCWGC 1 cut(s) 81
ApoI RAATTY 2 cut(s) 60, 122
AspA2I CCTAGG 1 cut(s) 52
AvrII CCTAGG 1 cut(s) 52
BbvI GCAGC 1 cut(s) 93
BccI CCATC 1 cut(s) 155
BceAI ACGGC 1 cut(s) 130
BfaI CTAG 1 cut(s) 53
BisI GCNGC 1 cut(s) 82
BlnI CCTAGG 1 cut(s) 52
BlpI GCTNAGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 83
BmsI GCATC 1 cut(s) 86
Bpu1102I GCTNAGC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 52
BseDI CCNNGG 1 cut(s) 52
BseGI GGATG 1 cut(s) 101
BseMII CTCAG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 93
Bsp1720I GCTNAGC 1 cut(s) 77
BspCNI CTCAG 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 52
Bst4CI ACNGT 1 cut(s) 109
Bst6I CTCTTC 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 77
BstF5I GGATG 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 93
BtsCI GGATG 1 cut(s) 101
CviAII CATG 1 cut(s) 73
CviJI RGCY 1 cut(s) 117
CviKI_1 RGCY 1 cut(s) 117
DdeI CTNAG 1 cut(s) 77
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
Eco130I CCWWGG 1 cut(s) 52
EcoRI GAATTC 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 52
FaeI CATG 1 cut(s) 76
FaiI YATR 1 cut(s) 74
FatI CATG 1 cut(s) 72
Fnu4HI GCNGC 1 cut(s) 82
FokI GGATG 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 82
FspBI CTAG 1 cut(s) 53
GluI GCNGC 1 cut(s) 82
Hin1II CATG 1 cut(s) 76
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 112
Hpy188III TCNNGA 1 cut(s) 136
Hpy8I GTNNAC 1 cut(s) 112
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 1 cut(s) 39
HpyF3I CTNAG 1 cut(s) 77
Hsp92II CATG 1 cut(s) 76
LpnPI CCDG 1 cut(s) 34
Lsp1109I GCAGC 1 cut(s) 93
LweI GCATC 1 cut(s) 86
MaeI CTAG 1 cut(s) 53
MaeIII GTNAC 1 cut(s) 23
MboII GAAGA 2 cut(s) 58, 69
MfeI CAATTG 1 cut(s) 151
MluCI AATT 3 cut(s) 60, 122, 151
MunI CAATTG 1 cut(s) 151
NlaIII CATG 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 23
PkrI GCNGC 1 cut(s) 83
SatI GCNGC 1 cut(s) 82
SetI ASST 2 cut(s) 54, 92
SfaNI GCATC 1 cut(s) 86
SgeI CNNG 4 cut(s) 33, 65, 85, 148
Sse9I AATT 3 cut(s) 60, 122, 151
SspMI CTAG 1 cut(s) 53
StyI CCWWGG 1 cut(s) 52
TaaI ACNGT 1 cut(s) 109
TasI AATT 3 cut(s) 60, 122, 151
TseFI GTSAC 1 cut(s) 23
TseI GCWGC 1 cut(s) 81
Tsp45I GTSAC 1 cut(s) 23
XapI RAATTY 2 cut(s) 60, 122
XmaJI CCTAGG 1 cut(s) 52
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.