Prupe.2G036700_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
3969332 .. 3972704
3373 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G036700.1

Sequence Viewer

Length: 351 bp
ATGAAACCTTTCGACAACAGAACTTTAACAACAGAGCACCTTGGGATAAGTCTCTTCTCTATACTGAGACCGAGGACCACAGGATATTTGGCAATCATTCCTGACGACCATCCCATCTTGTTCACTAAAAGATCCATTGCTTGCATAAGTTTCTTCTCCGAGACAATCATAGACAGCGGGTTCTTCCTGAAAGCGGAGAGAAAATCATCCTCAGACCAACCCCATGTCTTAAGAACTTCACGACTTCTATTCAATACCAACTTATTCTTACCACACAATGCACACAGGGCATTCACTGAAGTTGATTTTTCCAGATTAAATCCCATTTCCTTAACCTCACCCACAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.19

Weight (kDa)

9.51

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0021130)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 177, 194
AclWI GGATC 1 cut(s) 126
AcuI CTGAAG 1 cut(s) 318
AfiI CCNNNNNNNGG 1 cut(s) 193
AflII CTTAAG 1 cut(s) 229
AgsI TTSAA 1 cut(s) 253
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 3 cut(s) 56, 61, 155
AlwI GGATC 1 cut(s) 126
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 75
AsuHPI GGTGA 1 cut(s) 330
AvaII GGWCC 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 39
BccI CCATC 2 cut(s) 117, 122
BcoDI GTCTC 3 cut(s) 56, 61, 155
BfrI CTTAAG 1 cut(s) 229
Bme18I GGWCC 1 cut(s) 75
BmgT120I GGNCC 1 cut(s) 75
BsaI GGTCTC 1 cut(s) 61
BsaJI CCNNGG 2 cut(s) 40, 71
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse3DI GCAATG 1 cut(s) 135
BseDI CCNNGG 2 cut(s) 40, 71
BseGI GGATG 2 cut(s) 109, 206
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMI GCAATG 1 cut(s) 135
BseMII CTCAG 2 cut(s) 56, 225
BsiHKAI GWGCWC 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 3 cut(s) 56, 61, 155
BsmI GAATGC 1 cut(s) 290
Bso31I GGTCTC 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 131
BspACI CCGC 2 cut(s) 177, 194
BspCNI CTCAG 2 cut(s) 57, 224
BspPI GGATC 1 cut(s) 126
BspTI CTTAAG 1 cut(s) 229
BspTNI GGTCTC 1 cut(s) 61
BsrDI GCAATG 1 cut(s) 135
BssECI CCNNGG 2 cut(s) 40, 71
BssMI GATC 1 cut(s) 131
BssT1I CCWWGG 1 cut(s) 40
Bst6I CTCTTC 1 cut(s) 59
BstAFI CTTAAG 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 2 cut(s) 65, 211
BstF5I GGATG 2 cut(s) 109, 206
BstKTI GATC 1 cut(s) 134
BstMAI GTCTC 3 cut(s) 56, 61, 155
BstMBI GATC 1 cut(s) 131
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BtsCI GGATG 2 cut(s) 109, 206
BtsIMutI CAGTG 1 cut(s) 294
Cac8I GCNNGC 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 75
CviAII CATG 1 cut(s) 224
DdeI CTNAG 2 cut(s) 65, 211
DpnI GATC 1 cut(s) 133
DpnII GATC 1 cut(s) 131
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Eco130I CCWWGG 1 cut(s) 40
Eco31I GGTCTC 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 318
EcoT14I CCWWGG 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 40
FaeI CATG 1 cut(s) 227
FaiI YATR 4 cut(s) 62, 146, 170, 225
FatI CATG 1 cut(s) 223
FauI CCCGC 1 cut(s) 170
FokI GGATG 2 cut(s) 96, 193
Hin1II CATG 1 cut(s) 227
HphI GGTGA 1 cut(s) 330
Hpy166II GTNNAC 1 cut(s) 123
Hpy188I TCNGA 2 cut(s) 160, 214
Hpy188III TCNNGA 4 cut(s) 101, 187, 240, 312
Hpy8I GTNNAC 1 cut(s) 123
HpyCH4V TGCA 2 cut(s) 144, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 2 cut(s) 65, 211
Hsp92II CATG 1 cut(s) 227
Kzo9I GATC 1 cut(s) 131
LpnPI CCDG 5 cut(s) 66, 114, 200, 271, 325
MalI GATC 1 cut(s) 133
MboI GATC 1 cut(s) 131
MboII GAAGA 3 cut(s) 46, 145, 175
MflI RGATCY 1 cut(s) 131
MhlI GDGCHC 1 cut(s) 39
MnlI CCTC 3 cut(s) 66, 220, 346
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 4 cut(s) 26, 230, 317, 332
MspA1I CMGCKG 1 cut(s) 177
MspCI CTTAAG 1 cut(s) 229
Mva1269I GAATGC 1 cut(s) 290
MwoI GCNNNNNNNGC 1 cut(s) 287
NdeII GATC 1 cut(s) 131
NlaIII CATG 1 cut(s) 227
PctI GAATGC 1 cut(s) 290
PdmI GAANNNNTTC 1 cut(s) 8
PspPI GGNCC 1 cut(s) 75
PsuI RGATCY 1 cut(s) 131
SaqAI TTAA 4 cut(s) 26, 230, 317, 332
Sau3AI GATC 1 cut(s) 131
Sau96I GGNCC 1 cut(s) 75
SduI GDGCHC 1 cut(s) 39
SetI ASST 3 cut(s) 10, 42, 338
SinI GGWCC 1 cut(s) 75
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
SsiI CCGC 2 cut(s) 177, 194
StyI CCWWGG 1 cut(s) 40
TaqI TCGA 1 cut(s) 12
TaqII GACCGA 1 cut(s) 85
Tru1I TTAA 4 cut(s) 26, 230, 317, 332
Tru9I TTAA 4 cut(s) 26, 230, 317, 332
TscAI CASTG 1 cut(s) 301
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 301
Vha464I CTTAAG 1 cut(s) 229
VpaK11BI GGWCC 1 cut(s) 75
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.