Prupe.2G037300_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
4003954 .. 4006013
2060 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G037300.1

Sequence Viewer

Length: 351 bp
ATGAAACCTTTCAACAGCAGAACTTTAACAACAGAGCACCTTGGGATAAGTCTCCTCTCCAAACTGAGACTGAGGACCACAGGATATTTGGCAATCATTCCTGACGACCATCCCATCTTGTTCACTAAAAGATCCATTGCTTGCATAAGTTTCTTCTCCGAGACAATCATACACCGCGGGTTCTTCCTGAAAGCGGAGAGAAAATCATCCTCAGACCAACCCCATGTCTTAAGAACTTCGCGACTTCTACTCCATACCAACTTATTCTTGCCGCACAATGCACACATGGCATTCACTGAAGTTGATTTTTCCAGATTAAATCCCATTTCCTTAACCTCACTCACAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.23

Weight (kDa)

10.27

Isoelectric Point (pI)

37.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0021130)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 177, 241
AciI CCGC 4 cut(s) 175, 177, 194, 272
AclWI GGATC 1 cut(s) 126
AcuI CTGAAG 1 cut(s) 318
AfiI CCNNNNNNNGG 1 cut(s) 193
AflII CTTAAG 1 cut(s) 229
AgsI TTSAA 1 cut(s) 13
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 3 cut(s) 56, 61, 155
AlwI GGATC 1 cut(s) 126
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 75
AvaII GGWCC 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 39
BccI CCATC 2 cut(s) 117, 122
BcoDI GTCTC 3 cut(s) 56, 61, 155
BfrI CTTAAG 1 cut(s) 229
BisI GCNGC 1 cut(s) 272
BlsI GCNGC 1 cut(s) 273
Bme18I GGWCC 1 cut(s) 75
BmgT120I GGNCC 1 cut(s) 75
BsaJI CCNNGG 2 cut(s) 40, 175
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse3DI GCAATG 1 cut(s) 135
BseDI CCNNGG 2 cut(s) 40, 175
BseGI GGATG 2 cut(s) 109, 206
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMI GCAATG 1 cut(s) 135
BseMII CTCAG 3 cut(s) 56, 62, 225
BseRI GAGGAG 1 cut(s) 44
Bsh1236I CGCG 2 cut(s) 177, 241
BsiHKAI GWGCWC 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 3 cut(s) 56, 61, 155
BsmI GAATGC 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 131
Bsp68I TCGCGA 1 cut(s) 241
BspACI CCGC 4 cut(s) 175, 177, 194, 272
BspCNI CTCAG 3 cut(s) 57, 63, 224
BspFNI CGCG 2 cut(s) 177, 241
BspPI GGATC 1 cut(s) 126
BspTI CTTAAG 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 135
BssECI CCNNGG 2 cut(s) 40, 175
BssMI GATC 1 cut(s) 131
BssT1I CCWWGG 1 cut(s) 40
BstAFI CTTAAG 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 3 cut(s) 65, 71, 211
BstDSI CCRYGG 1 cut(s) 175
BstF5I GGATG 2 cut(s) 109, 206
BstFNI CGCG 2 cut(s) 177, 241
BstKTI GATC 1 cut(s) 134
BstMAI GTCTC 3 cut(s) 56, 61, 155
BstMBI GATC 1 cut(s) 131
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstUI CGCG 2 cut(s) 177, 241
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BtgI CCRYGG 1 cut(s) 175
BtsCI GGATG 2 cut(s) 109, 206
BtsIMutI CAGTG 1 cut(s) 294
BtuMI TCGCGA 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 75
Cfr42I CCGCGG 1 cut(s) 178
CviAII CATG 2 cut(s) 224, 286
DdeI CTNAG 3 cut(s) 65, 71, 211
DpnI GATC 1 cut(s) 133
DpnII GATC 1 cut(s) 131
Eco130I CCWWGG 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 318
EcoT14I CCWWGG 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 40
FaeI CATG 2 cut(s) 227, 289
FaiI YATR 5 cut(s) 146, 170, 225, 255, 287
FatI CATG 2 cut(s) 223, 285
FauI CCCGC 1 cut(s) 170
Fnu4HI GCNGC 1 cut(s) 272
FokI GGATG 2 cut(s) 96, 193
Fsp4HI GCNGC 1 cut(s) 272
GluI GCNGC 1 cut(s) 272
Hin1II CATG 2 cut(s) 227, 289
Hpy166II GTNNAC 1 cut(s) 123
Hpy188I TCNGA 2 cut(s) 160, 214
Hpy188III TCNNGA 4 cut(s) 101, 187, 240, 312
Hpy8I GTNNAC 1 cut(s) 123
HpyCH4V TGCA 2 cut(s) 144, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 3 cut(s) 65, 71, 211
Hsp92II CATG 2 cut(s) 227, 289
KspI CCGCGG 1 cut(s) 178
Kzo9I GATC 1 cut(s) 131
LpnPI CCDG 4 cut(s) 66, 114, 200, 325
MalI GATC 1 cut(s) 133
MboI GATC 1 cut(s) 131
MboII GAAGA 2 cut(s) 145, 175
MflI RGATCY 1 cut(s) 131
MhlI GDGCHC 1 cut(s) 39
MnlI CCTC 4 cut(s) 65, 66, 220, 346
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 4 cut(s) 26, 230, 317, 332
MspA1I CMGCKG 1 cut(s) 177
MspCI CTTAAG 1 cut(s) 229
Mva1269I GAATGC 1 cut(s) 290
MvnI CGCG 2 cut(s) 177, 241
MwoI GCNNNNNNNGC 1 cut(s) 287
NdeII GATC 1 cut(s) 131
NlaIII CATG 2 cut(s) 227, 289
NruI TCGCGA 1 cut(s) 241
PctI GAATGC 1 cut(s) 290
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 1 cut(s) 273
PspPI GGNCC 1 cut(s) 75
PsuI RGATCY 1 cut(s) 131
RruI TCGCGA 1 cut(s) 241
SacII CCGCGG 1 cut(s) 178
SaqAI TTAA 4 cut(s) 26, 230, 317, 332
SatI GCNGC 1 cut(s) 272
Sau3AI GATC 1 cut(s) 131
Sau96I GGNCC 1 cut(s) 75
SduI GDGCHC 1 cut(s) 39
SetI ASST 3 cut(s) 10, 42, 338
Sfr303I CCGCGG 1 cut(s) 178
SgrBI CCGCGG 1 cut(s) 178
SinI GGWCC 1 cut(s) 75
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
SsiI CCGC 4 cut(s) 175, 177, 194, 272
StyI CCWWGG 1 cut(s) 40
TauI GCSGC 1 cut(s) 274
Tru1I TTAA 4 cut(s) 26, 230, 317, 332
Tru9I TTAA 4 cut(s) 26, 230, 317, 332
TscAI CASTG 1 cut(s) 301
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 301
Vha464I CTTAAG 1 cut(s) 229
VpaK11BI GGWCC 1 cut(s) 75
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.