MD06G1187700.v1.1

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0022311
Physical Location & Seq
Reverse (-)
32521019 .. 32522262
1244 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1187700.v1.1.491

Sequence Viewer

Length: 1047 bp
ATGTACAAGCGTGACCCCAACTTCCAGTTGTTGCACGAGCAGGTTTCGGATCTTTACGCTGAGCACTTGAAGTCTGATATTCAGAATTTGAAGAAATACGAGCAGCAGCAGTTGGACAATGCTTATGGTCCTACACAGTGGGAGTTGGAGTTAACCCCGACTGCAAGGTGGTGCCCTTCTGTTGATTGCTTCTTTGATCGCGCCACTTTACTCTGTGAAAGCATTGCAAGGAAGGTTTTCCCGCGAGAGGAATGTGCAAAAGATGTTTCTGACCAGGAGGAGGAGGAGGCTGATTACGCGTCCAGAGTCCAAGAGCGGCTGATGGATGAGGTTTTGATGCCGTTGAGGAAGTTCATGAACTCGGGCTATTCGCATGATTTTCCAGCAGAGAGAAGGTCTGATGTGGTTAAGGAGTATATGAACGATGTCGATGATGCTGGCAAGTCTGAGATTGAGGCAGATGCTATGTTTCCACATGAGATCATACGCTATGTGAACTACCGCAATTTTGCGGAACTGGTTGACCCTCAGTGGAAGGCAATGGTGGAGGAAATATATGTAAAGCAGGGCAAGTTGAAGAACTGCTTGGCTATGTGTGACGTCTCCGGAAGGATGCCGTGGAAAGGAAAGGTCTTCACTTTTAGTCGAAACCCTCAGCTACTTTCGATACAAGGCGATGATCTTAAGTCCAAGTGCAGGTTTATGAGGAGGATGGACAATCAGGACTGGGACGTTGACACTAATTTTCTAAAGTTGTATGTGTTCACTAGTGACCAAGACTTTGATGATGCTTGCGGCCGTAGCTGGAGGACTGATTACGAGGCTATACAGAGAAAGTTTAAGGAGAAAGGCTATGGAGATGTGGTGCCACACATAGTGTTTTGGGATCTAACCGGTGACGAGTATGTCCCTGTGGAGTGGTGTACACAACATGGGGTGACCGCTATGAGAGGGTACTCCAAGGATTTTGTCGAGTGCTTCTTGGACAATGACGGTGATTTTGGCCCCGACCAGGTCATGGAAGCTGTCATCTCCTATGAGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

349

Amino Acids

40.94

Weight (kDa)

4.7

Isoelectric Point (pI)

39.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 2 - 120 3.1e-28 Domain of unknown function (DUF2828)
DUF7788 PF25043 205 - 253 9.3e-07 Domain of unknown function (DUF7788)
DUF7788 PF25043 251 - 335 5.9e-20 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022311)

Species Orthologous Gene IDs
malus_domestica MD06G1187700.v1.1 MD06G1187900.v1.1 MD06G1188000.v1.1
prunus_persica Prupe.5G186100_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 905
AatII GACGTC 1 cut(s) 603
Acc36I ACCTGC 2 cut(s) 31, 687
AccB1I GGYRCC 2 cut(s) 171, 865
AccB7I CCANNNNNTGG 1 cut(s) 1018
AccBSI CCGCTC 1 cut(s) 316
AccII CGCG 3 cut(s) 201, 244, 299
AccIII TCCGGA 1 cut(s) 605
AciI CCGC 6 cut(s) 242, 316, 502, 512, 795, 942
AclWI GGATC 2 cut(s) 57, 894
AcoI YGGCCR 1 cut(s) 796
AcsI RAATTY 1 cut(s) 85
AcyI GRCGYC 1 cut(s) 600
AdeI CACNNNGTG 1 cut(s) 877
AfaI GTAC 3 cut(s) 5, 925, 956
AfiI CCNNNNNNNGG 6 cut(s) 247, 280, 623, 696, 1012, 1018
AflII CTTAAG 1 cut(s) 683
AflIII ACRYGT 1 cut(s) 297
AgeI ACCGGT 1 cut(s) 893
AgsI TTSAA 3 cut(s) 70, 91, 577
AhlI ACTAGT 1 cut(s) 767
AjnI CCWGG 2 cut(s) 273, 1011
AjuI GAANNNNNNNTTGG 2 cut(s) 569, 601
AluBI AGCT 3 cut(s) 658, 804, 1025
AluI AGCT 3 cut(s) 658, 804, 1025
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 607
AlwI GGATC 2 cut(s) 57, 894
Ama87I CYCGRG 1 cut(s) 361
Aor13HI TCCGGA 1 cut(s) 605
AoxI GGCC 2 cut(s) 796, 1003
ApeKI GCWGC 2 cut(s) 103, 106
ApoI RAATTY 1 cut(s) 85
ArsI GACNNNNNNTTYG 4 cut(s) 764, 796, 983, 1015
AsiGI ACCGGT 1 cut(s) 893
Asp700I GAANNNNTTC 1 cut(s) 236
AspLEI GCGC 1 cut(s) 203
AspS9I GGNCC 2 cut(s) 128, 1004
AsuHPI GGTGA 3 cut(s) 908, 949, 1007
AvaI CYCGRG 1 cut(s) 361
AvaII GGWCC 1 cut(s) 128
BaeGI GKGCMC 1 cut(s) 176
BanI GGYRCC 2 cut(s) 171, 865
BauI CACGAG 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 625
Bbv12I GWGCWC 1 cut(s) 66
BbvCI CCTCAGC 1 cut(s) 654
BbvI GCAGC 2 cut(s) 115, 118
BccI CCATC 2 cut(s) 316, 706
BceAI ACGGC 3 cut(s) 325, 601, 783
BciT130I CCWGG 2 cut(s) 275, 1013
BcoDI GTCTC 1 cut(s) 607
BcuI ACTAGT 1 cut(s) 767
BfaI CTAG 1 cut(s) 768
BfrI CTTAAG 1 cut(s) 683
BfuAI ACCTGC 2 cut(s) 31, 687
BisI GCNGC 4 cut(s) 104, 107, 317, 796
BlpI GCTNAGC 1 cut(s) 60
BlsI GCNGC 4 cut(s) 105, 108, 318, 797
Bme1390I CCNGG 2 cut(s) 275, 1013
Bme18I GGWCC 1 cut(s) 128
BmeT110I CYCGRG 1 cut(s) 361
BmgT120I GGNCC 2 cut(s) 128, 1004
BmiI GGNNCC 3 cut(s) 173, 867, 1006
BmrFI CCNGG 2 cut(s) 275, 1013
BmrI ACTGGG 1 cut(s) 736
BmsI GCATC 5 cut(s) 327, 424, 451, 603, 778
BmuI ACTGGG 1 cut(s) 736
BpiI GAAGAC 1 cut(s) 625
BpmI CTGGAG 1 cut(s) 826
Bpu10I CCTNAGC 1 cut(s) 654
Bpu1102I GCTNAGC 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 600
BsaJI CCNNGG 2 cut(s) 617, 960
BsaWI WCCGGW 2 cut(s) 605, 893
BsaXI ACNNNNNCTCC 4 cut(s) 134, 164, 849, 879
Bsc4I CCNNNNNNNGG 6 cut(s) 247, 280, 623, 696, 1012, 1018
Bse118I RCCGGY 1 cut(s) 893
Bse1I ACTGG 3 cut(s) 25, 522, 731
Bse3DI GCAATG 2 cut(s) 222, 546
BseAI TCCGGA 1 cut(s) 605
BseBI CCWGG 2 cut(s) 275, 1013
BseDI CCNNGG 2 cut(s) 617, 960
BseGI GGATG 3 cut(s) 331, 618, 717
BseLI CCNNNNNNNGG 6 cut(s) 247, 280, 623, 696, 1012, 1018
BseMI GCAATG 2 cut(s) 222, 546
BseMII CTCAG 4 cut(s) 51, 438, 542, 668
BseNI ACTGG 3 cut(s) 25, 522, 731
BseRI GAGGAG 4 cut(s) 293, 296, 299, 721
BseSI GKGCMC 1 cut(s) 176
BseX3I CGGCCG 1 cut(s) 796
BseXI GCAGC 2 cut(s) 115, 118
BsgI GTGCAG 1 cut(s) 715
Bsh1236I CGCG 3 cut(s) 201, 244, 299
Bsh1285I CGRYCG 1 cut(s) 799
BshFI GGCC 2 cut(s) 798, 1005
BshNI GGYRCC 2 cut(s) 171, 865
BshTI ACCGGT 1 cut(s) 893
BsiEI CGRYCG 1 cut(s) 799
BsiHKAI GWGCWC 1 cut(s) 66
BsiHKCI CYCGRG 1 cut(s) 361
BsiSI CCGG 2 cut(s) 606, 894
BslFI GGGAC 2 cut(s) 743, 893
BslI CCNNNNNNNGG 6 cut(s) 247, 280, 623, 696, 1012, 1018
BsmAI GTCTC 1 cut(s) 607
BsmBI CGTCTC 1 cut(s) 607
BsmFI GGGAC 2 cut(s) 743, 893
BsnI GGCC 2 cut(s) 798, 1005
BsoBI CYCGRG 1 cut(s) 361
Bsp1286I GDGCHC 2 cut(s) 66, 176
Bsp13I TCCGGA 1 cut(s) 605
Bsp1407I TGTACA 2 cut(s) 3, 923
Bsp143I GATC 5 cut(s) 49, 196, 480, 679, 886
Bsp1720I GCTNAGC 1 cut(s) 60
BspACI CCGC 6 cut(s) 242, 316, 502, 512, 795, 942
BspANI GGCC 2 cut(s) 798, 1005
BspCNI CTCAG 4 cut(s) 52, 439, 541, 667
BspEI TCCGGA 1 cut(s) 605
BspFNI CGCG 3 cut(s) 201, 244, 299
BspHI TCATGA 1 cut(s) 354
BspLI GGNNCC 3 cut(s) 173, 867, 1006
BspMI ACCTGC 2 cut(s) 31, 687
BspPI GGATC 2 cut(s) 57, 894
BspT107I GGYRCC 2 cut(s) 171, 865
BspTI CTTAAG 1 cut(s) 683
BsrBI CCGCTC 1 cut(s) 316
BsrDI GCAATG 2 cut(s) 222, 546
BsrFI RCCGGY 1 cut(s) 893
BsrGI TGTACA 2 cut(s) 3, 923
BsrI ACTGG 3 cut(s) 25, 522, 731
BssAI RCCGGY 1 cut(s) 893
BssECI CCNNGG 2 cut(s) 617, 960
BssMI GATC 5 cut(s) 49, 196, 480, 679, 886
BssNI GRCGYC 1 cut(s) 600
BssSI CACGAG 1 cut(s) 35
BssT1I CCWWGG 1 cut(s) 960
Bst2BI CACGAG 1 cut(s) 35
Bst2UI CCWGG 2 cut(s) 275, 1013
Bst4CI ACNGT 2 cut(s) 138, 995
BstACI GRCGYC 1 cut(s) 600
BstAFI CTTAAG 1 cut(s) 683
BstAUI TGTACA 2 cut(s) 3, 923
BstC8I GCNNGC 2 cut(s) 439, 793
BstDEI CTNAG 4 cut(s) 60, 447, 528, 654
BstDSI CCRYGG 1 cut(s) 617
BstEII GGTNACC 1 cut(s) 937
BstF5I GGATG 3 cut(s) 331, 618, 717
BstFNI CGCG 3 cut(s) 201, 244, 299
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 5 cut(s) 52, 199, 483, 682, 889
BstMAI GTCTC 1 cut(s) 607
BstMBI GATC 5 cut(s) 49, 196, 480, 679, 886
BstMCI CGRYCG 1 cut(s) 799
BstMWI GCNNNNNNNGC 2 cut(s) 296, 801
BstNI CCWGG 2 cut(s) 275, 1013
BstPI GGTNACC 1 cut(s) 937
BstSCI CCNGG 2 cut(s) 273, 1011
BstSLI GKGCMC 1 cut(s) 176
BstUI CGCG 3 cut(s) 201, 244, 299
BstV1I GCAGC 2 cut(s) 115, 118
BstV2I GAAGAC 1 cut(s) 625
BstX2I RGATCY 2 cut(s) 49, 886
BstYI RGATCY 2 cut(s) 49, 886
BstZI CGGCCG 1 cut(s) 796
BsuRI GGCC 2 cut(s) 798, 1005
BtgI CCRYGG 1 cut(s) 617
BtgZI GCGATG 1 cut(s) 690
BtsCI GGATG 3 cut(s) 331, 618, 717
BtsIMutI CAGTG 2 cut(s) 143, 536
BveI ACCTGC 2 cut(s) 31, 687
Cac8I GCNNGC 2 cut(s) 439, 793
CciI TCATGA 1 cut(s) 354
CfoI GCGC 1 cut(s) 203
Cfr10I RCCGGY 1 cut(s) 893
Cfr13I GGNCC 2 cut(s) 128, 1004
CseI GACGC 1 cut(s) 288
CsiI ACCWGGT 1 cut(s) 1011
Csp6I GTAC 3 cut(s) 4, 924, 955
CspAI ACCGGT 1 cut(s) 893
CviAII CATG 5 cut(s) 355, 374, 476, 932, 1018
CviQI GTAC 3 cut(s) 4, 924, 955
DdeI CTNAG 4 cut(s) 60, 447, 528, 654
DpnI GATC 5 cut(s) 51, 198, 482, 681, 888
DpnII GATC 5 cut(s) 49, 196, 480, 679, 886
DraIII CACNNNGTG 1 cut(s) 877
DrdI GACNNNNNNGTC 1 cut(s) 905
DseDI GACNNNNNNGTC 1 cut(s) 905
EaeI YGGCCR 1 cut(s) 796
EagI CGGCCG 1 cut(s) 796
EclXI CGGCCG 1 cut(s) 796
Eco130I CCWWGG 1 cut(s) 960
Eco47I GGWCC 1 cut(s) 128
Eco52I CGGCCG 1 cut(s) 796
Eco88I CYCGRG 1 cut(s) 361
Eco91I GGTNACC 1 cut(s) 937
EcoO65I GGTNACC 1 cut(s) 937
EcoRII CCWGG 2 cut(s) 273, 1011
EcoT14I CCWWGG 1 cut(s) 960
ErhI CCWWGG 1 cut(s) 960
Esp3I CGTCTC 1 cut(s) 607
FaeI CATG 5 cut(s) 358, 377, 479, 935, 1021
FalI AAGNNNNNCTT 2 cut(s) 569, 601
FaqI GGGAC 2 cut(s) 743, 893
FatI CATG 5 cut(s) 354, 373, 475, 931, 1017
FauI CCCGC 1 cut(s) 249
Fnu4HI GCNGC 4 cut(s) 104, 107, 317, 796
FokI GGATG 3 cut(s) 338, 625, 724
Fsp4HI GCNGC 4 cut(s) 104, 107, 317, 796
FspBI CTAG 1 cut(s) 768
GlaI GCGC 1 cut(s) 202
GluI GCNGC 4 cut(s) 104, 107, 317, 796
GsuI CTGGAG 1 cut(s) 826
HaeIII GGCC 2 cut(s) 798, 1005
HapII CCGG 2 cut(s) 606, 894
HgaI GACGC 1 cut(s) 288
HhaI GCGC 1 cut(s) 203
Hin1I GRCGYC 1 cut(s) 600
Hin1II CATG 5 cut(s) 358, 377, 479, 935, 1021
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HincII GTYRAC 3 cut(s) 153, 523, 736
HindII GTYRAC 3 cut(s) 153, 523, 736
HinfI GANTC 1 cut(s) 306
HpaI GTTAAC 1 cut(s) 153
HpaII CCGG 2 cut(s) 606, 894
HphI GGTGA 3 cut(s) 908, 949, 1007
Hpy166II GTNNAC 7 cut(s) 153, 496, 523, 736, 765, 924, 926
Hpy188I TCNGA 6 cut(s) 49, 76, 84, 271, 400, 448
Hpy188III TCNNGA 4 cut(s) 303, 355, 606, 722
Hpy8I GTNNAC 7 cut(s) 153, 496, 523, 736, 765, 924, 926
HpyAV CCTTC 5 cut(s) 186, 226, 387, 529, 603
HpyCH4III ACNGT 2 cut(s) 138, 995
HpyCH4IV ACGT 2 cut(s) 600, 732
HpyCH4V TGCA 5 cut(s) 34, 164, 227, 257, 696
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 801
HpyF3I CTNAG 4 cut(s) 60, 447, 528, 654
HpySE526I ACGT 2 cut(s) 600, 732
Hsp92I GRCGYC 1 cut(s) 600
Hsp92II CATG 5 cut(s) 358, 377, 479, 935, 1021
HspAI GCGC 1 cut(s) 201
Kpn2I TCCGGA 1 cut(s) 605
KspAI GTTAAC 1 cut(s) 153
Kzo9I GATC 5 cut(s) 49, 196, 480, 679, 886
Lsp1109I GCAGC 2 cut(s) 115, 118
LweI GCATC 5 cut(s) 327, 424, 451, 603, 778
MabI ACCWGGT 1 cut(s) 1011
MaeI CTAG 1 cut(s) 768
MaeII ACGT 2 cut(s) 600, 732
MaeIII GTNAC 5 cut(s) 11, 596, 770, 896, 937
MalI GATC 5 cut(s) 51, 198, 482, 681, 888
MbiI CCGCTC 1 cut(s) 316
MboI GATC 5 cut(s) 49, 196, 480, 679, 886
MboII GAAGA 3 cut(s) 103, 589, 625
MflI RGATCY 2 cut(s) 49, 886
MhlI GDGCHC 2 cut(s) 66, 176
MluCI AATT 3 cut(s) 85, 505, 742
MluI ACGCGT 1 cut(s) 297
MlyI GAGTC 1 cut(s) 315
MmeI TCCRAC 2 cut(s) 93, 126
MroI TCCGGA 1 cut(s) 605
MroXI GAANNNNTTC 1 cut(s) 236
MseI TTAA 4 cut(s) 152, 408, 684, 840
MspCI CTTAAG 1 cut(s) 683
MspI CCGG 2 cut(s) 606, 894
MspR9I CCNGG 2 cut(s) 275, 1013
MvaI CCWGG 2 cut(s) 275, 1013
MvnI CGCG 3 cut(s) 201, 244, 299
MwoI GCNNNNNNNGC 2 cut(s) 296, 801
NdeII GATC 5 cut(s) 49, 196, 480, 679, 886
NlaIII CATG 5 cut(s) 358, 377, 479, 935, 1021
NlaIV GGNNCC 3 cut(s) 173, 867, 1006
NmuCI GTSAC 5 cut(s) 11, 596, 770, 896, 937
PagI TCATGA 1 cut(s) 354
PdmI GAANNNNTTC 1 cut(s) 236
PflFI GACNNNGTC 1 cut(s) 1013
PflMI CCANNNNNTGG 1 cut(s) 1018
PinAI ACCGGT 1 cut(s) 893
PkrI GCNGC 4 cut(s) 105, 108, 318, 797
PleI GAGTC 1 cut(s) 314
PpsI GAGTC 1 cut(s) 314
Psp6I CCWGG 2 cut(s) 273, 1011
PspEI GGTNACC 1 cut(s) 937
PspGI CCWGG 2 cut(s) 273, 1011
PspN4I GGNNCC 3 cut(s) 173, 867, 1006
PspPI GGNCC 2 cut(s) 128, 1004
PsuI RGATCY 2 cut(s) 49, 886
PsyI GACNNNGTC 1 cut(s) 1013
RsaI GTAC 3 cut(s) 5, 925, 956
RsaNI GTAC 3 cut(s) 4, 924, 955
SaqAI TTAA 4 cut(s) 152, 408, 684, 840
SatI GCNGC 4 cut(s) 104, 107, 317, 796
Sau3AI GATC 5 cut(s) 49, 196, 480, 679, 886
Sau96I GGNCC 2 cut(s) 128, 1004
SchI GAGTC 1 cut(s) 315
ScrFI CCNGG 2 cut(s) 275, 1013
SduI GDGCHC 2 cut(s) 66, 176
SexAI ACCWGGT 1 cut(s) 1011
SfaNI GCATC 5 cut(s) 327, 424, 451, 603, 778
SinI GGWCC 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 683
SmoI CTYRAG 1 cut(s) 683
SpeI ACTAGT 1 cut(s) 767
Sse9I AATT 3 cut(s) 85, 505, 742
SsiI CCGC 6 cut(s) 242, 316, 502, 512, 795, 942
SspMI CTAG 1 cut(s) 768
StyD4I CCNGG 2 cut(s) 273, 1011
StyI CCWWGG 1 cut(s) 960
TaaI ACNGT 2 cut(s) 138, 995
TaiI ACGT 2 cut(s) 603, 735
TaqI TCGA 4 cut(s) 429, 646, 665, 972
TasI AATT 3 cut(s) 85, 505, 742
TatI WGTACW 2 cut(s) 3, 923
TauI GCSGC 2 cut(s) 319, 798
Tru1I TTAA 4 cut(s) 152, 408, 684, 840
Tru9I TTAA 4 cut(s) 152, 408, 684, 840
TscAI CASTG 2 cut(s) 143, 536
TseFI GTSAC 5 cut(s) 11, 596, 770, 896, 937
TseI GCWGC 2 cut(s) 103, 106
Tsp45I GTSAC 5 cut(s) 11, 596, 770, 896, 937
TspDTI ATGAA 3 cut(s) 343, 371, 434
TspRI CASTG 2 cut(s) 143, 536
Tth111I GACNNNGTC 1 cut(s) 1013
Van91I CCANNNNNTGG 1 cut(s) 1018
Vha464I CTTAAG 1 cut(s) 683
VpaK11BI GGWCC 1 cut(s) 128
XapI RAATTY 1 cut(s) 85
XmnI GAANNNNTTC 1 cut(s) 236
XspI CTAG 1 cut(s) 768
ZraI GACGTC 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.