MD06G1187900.v1.1

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0022311
Physical Location & Seq
Reverse (-)
32523584 .. 32525410
1827 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1187900.v1.1.491

Sequence Viewer

Length: 1827 bp
ATGACGACAGGGCAAGTGCAACTCATCTCCGTTCTCAAAGCGTGCCCAAACTTTGCCGCCGCCGGTGGCAGCATTTCTCCATGCACAAGTCCTACAACTCTTGTTGGTCCTCCAGAGCTCAAACTCCCAACCTCACCACCACCTCCGCCTCGACTTCATTCAGAATACAAACGGGCTTGGGCTCGCACCCCCTCAGCGGCCAAGAGCCGCTTCCGCTCCTTCGGTAACCCCTTCCTTGATATCTTTTTCCATGCCGTAGGAGACACCCCCACCATTCGTAAGTATCTGAAGCAACTGCTTCCGTTCGCCTGGTCCCACAATCCCCTAACCACCCTCAAGGTCATTTGTTCTCTACAAAGGAGCTGTTTCACTGCCAGATTGTTTCACACCGCGGCATTCTGGCTCCACCAGAACCACCCCAAAACCCTAGCAGAAAACGTGGCGGCTTTTGCTGAACCAGGAAAGTTTGAAGAACTTCTCGAGGTTCTGTACCGGAATGTAGATGTAAATGGCGAGGGGATGAGGAGAATGGTGAGGACTCGTGAGTACGAATACCATCTGGAATTGATACAGGAAAAAGTAGACTGCGGCGGGCGTATTAGTAGTAATAAGAGAAAGGAGATGATGGACATGGCCAGGAAGGCTGTTGAGATGTACGAGCGCGACCAGAATTATCAGTTATTACACGAGCGGGTTTCGGATCTTTATGCTGAGTGCTTGAAGTCTGATATTCAAAATTTGAAAGAATATGAGAAGGAAAAGATGGCTGATGCCGTGGAGTTGAGGTTGACCACGGCGGCAAGGTGGTGCCCTTCCGTTGATTCCTACTACGATCGCGCCACTTTGCTCTGCGAGAGCATTGCGAGGAAAGTTTTCCTCCGAGAGAAATGCTCACAAGGAGTTAGTGTTGAGGAGGAGGCTGATTATGGGTTTAGAGTCCGAGAGCAGTTGATGAATGAGGTTTTGGAGCCCTTGAGGAGGTTCATGAAGCAATGCCTCTATGATGATGATTTTCCAAGAGAGAGGAGGTCCCATGCGGTTAAGAAGTACTGGATGGATATCAAAGCCGGTAAGTCCAAGATTGAGGCAAGTGCTATGCGTCCCGATGAGATCATATGCCATGCGAATAACCGCAACTTCGAGCAACTGGCTGACCCTCAGTGGAAGGCAATGGTGGAGGAGATCTATTTAAAGCAGGGCAAGTTGAAGAACTGCTTGGCTGTGTGTGACGTCTCAGGAAGGATGTGTGGGCACCCCATGAATGTATCCTTAGGTTTGGGACTATTGGTGTCTGAACTGAGTGAGGAGCCATGGAAAGGAAAGGTCTTCACTTTCAGTCGAAACCCTCAGCTACTTACGATACAAGGCGATGATCTTAAGTCCAAGTGCGTGTTTATGAGGAGGATGGACAATCAAGACTGGCACGGTGACGTTGATTTTCAGAAGGTGTTTGATTTGATTCTCGATGTGGCTGCGAATGAGAATTTGAAGCCAGAGCAAATGATCAAAAGGCTATATGTCTTCACCAGTTTTCAAGATTTTGATGATGCTTCGGTGAATAATTGGAAGACTGATTACAAGGCAATACAGAGAAAGTTTAAAGAGAAAGGGTACGGGGATGTGGTGCCACAGATAGTGTACTGGGATATGAATGACGACGATCTTATCCCATGGGTGCGCTATGCAGAACAAGGGGTGTCCAGGATGAGTGGGGACTGCAACGAATTTGTCCAGTTCCTTTTGGACAACGGGGTTTTTGGTCCCGACCATGTCATGGAAGCAGCCTTCTCTGGCGAACAATTTCAAAGCTTGGCTGTAGTCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

609

Amino Acids

70.04

Weight (kDa)

6.4

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 69 - 330 1.1e-47 Domain of unknown function (DUF2828)
DUF7788 PF25043 404 - 588 9.7e-56 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022311)

Species Orthologous Gene IDs
malus_domestica MD06G1187700.v1.1 MD06G1187900.v1.1 MD06G1188000.v1.1
prunus_persica Prupe.5G186100_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1233
AccB1I GGYRCC 3 cut(s) 807, 1251, 1624
AccB7I CCANNNNNTGG 1 cut(s) 1774
AccBSI CCGCTC 2 cut(s) 216, 691
AccI GTMKAC 2 cut(s) 582, 1821
AccII CGCG 3 cut(s) 392, 663, 837
AclWI GGATC 1 cut(s) 708
AcoI YGGCCR 2 cut(s) 198, 633
AcsI RAATTY 3 cut(s) 736, 1483, 1724
AcuI CTGAAG 1 cut(s) 308
AcyI GRCGYC 1 cut(s) 1230
AfaI GTAC 6 cut(s) 491, 548, 656, 1049, 1613, 1640
AfiI CCNNNNNNNGG 4 cut(s) 196, 978, 1316, 1774
AflII CTTAAG 1 cut(s) 1376
AgsI TTSAA 8 cut(s) 470, 721, 734, 742, 1207, 1489, 1535, 1805
AjnI CCWGG 4 cut(s) 308, 457, 635, 1700
AjuI GAANNNNNNNTTGG 6 cut(s) 194, 226, 947, 979, 1199, 1231
AluBI AGCT 4 cut(s) 118, 363, 1351, 1809
AluI AGCT 4 cut(s) 118, 363, 1351, 1809
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 2 cut(s) 255, 1237
AlwI GGATC 1 cut(s) 708
Ama87I CYCGRG 1 cut(s) 479
AoxI GGCC 2 cut(s) 198, 633
ApeKI GCWGC 3 cut(s) 69, 1472, 1781
ApoI RAATTY 3 cut(s) 736, 1483, 1724
Asp700I GAANNNNTTC 3 cut(s) 474, 872, 1800
AspLEI GCGC 3 cut(s) 663, 839, 1680
AspS9I GGNCC 4 cut(s) 107, 312, 1029, 1760
AsuHPI GGTGA 5 cut(s) 126, 544, 1439, 1516, 1567
AvaI CYCGRG 1 cut(s) 479
AvaII GGWCC 4 cut(s) 107, 312, 1029, 1760
AxyI CCTNAGG 1 cut(s) 1270
BaeGI GKGCMC 3 cut(s) 47, 812, 1254
BalI TGGCCA 1 cut(s) 635
BanI GGYRCC 3 cut(s) 807, 1251, 1624
BanII GRGCYC 3 cut(s) 120, 184, 972
BarI GAAGNNNNNNTAC 2 cut(s) 1559, 1591
BauI CACGAG 2 cut(s) 540, 686
BbsI GAAGAC 3 cut(s) 1318, 1513, 1574
Bbv12I GWGCWC 1 cut(s) 120
BbvCI CCTCAGC 2 cut(s) 193, 1347
BbvI GCAGC 3 cut(s) 81, 1459, 1793
BccI CCATC 5 cut(s) 564, 619, 757, 1048, 1399
BceAI ACGGC 3 cut(s) 239, 758, 810
BcgI CGANNNNNNTGC 6 cut(s) 842, 870, 876, 904, 1454, 1488
BciT130I CCWGG 4 cut(s) 310, 459, 637, 1702
BciVI GTATCC 1 cut(s) 1276
BclI TGATCA 1 cut(s) 1503
BcoDI GTCTC 2 cut(s) 255, 1237
BfaI CTAG 1 cut(s) 428
BfmI CTRYAG 1 cut(s) 1815
BfrI CTTAAG 1 cut(s) 1376
BfuI GTATCC 1 cut(s) 1276
BglI GCCNNNNNGGC 1 cut(s) 641
BglII AGATCT 1 cut(s) 1182
BmcAI AGTACT 1 cut(s) 1049
Bme1390I CCNGG 4 cut(s) 310, 459, 637, 1702
Bme18I GGWCC 4 cut(s) 107, 312, 1029, 1760
BmeT110I CYCGRG 1 cut(s) 479
BmgT120I GGNCC 4 cut(s) 107, 312, 1029, 1760
BmiI GGNNCC 9 cut(s) 314, 404, 809, 969, 1031, 1253, 1308, 1626, 1762
BmrFI CCNGG 4 cut(s) 310, 459, 637, 1702
BmrI ACTGGG 1 cut(s) 1651
BmsI GCATC 2 cut(s) 760, 1537
BmuI ACTGGG 1 cut(s) 1651
BpiI GAAGAC 3 cut(s) 1318, 1513, 1574
BplI GAGNNNNNCTC 2 cut(s) 875, 907
BpmI CTGGAG 1 cut(s) 96
Bpu10I CCTNAGC 2 cut(s) 193, 1347
BpuEI CTTGAG 2 cut(s) 320, 994
BsaBI GATNNNNATC 1 cut(s) 1058
BsaHI GRCGYC 1 cut(s) 1230
BsaJI CCNNGG 5 cut(s) 390, 774, 792, 1310, 1670
BsaWI WCCGGW 1 cut(s) 492
BsaXI ACNNNNNCTCC 4 cut(s) 770, 800, 891, 921
Bsc4I CCNNNNNNNGG 4 cut(s) 196, 978, 1316, 1774
Bse118I RCCGGY 2 cut(s) 62, 1067
Bse1I ACTGG 6 cut(s) 1055, 1152, 1424, 1527, 1646, 1732
Bse21I CCTNAGG 1 cut(s) 1270
Bse3DI GCAATG 3 cut(s) 858, 998, 1176
Bse8I GATNNNNATC 1 cut(s) 1058
BseBI CCWGG 4 cut(s) 310, 459, 637, 1702
BseDI CCNNGG 5 cut(s) 390, 774, 792, 1310, 1670
BseGI GGATG 6 cut(s) 525, 1059, 1248, 1410, 1624, 1710
BseJI GATNNNNATC 1 cut(s) 1058
BseLI CCNNNNNNNGG 4 cut(s) 196, 978, 1316, 1774
BseMI GCAATG 3 cut(s) 858, 998, 1176
BseMII CTCAG 6 cut(s) 207, 702, 1172, 1248, 1289, 1361
BseNI ACTGG 6 cut(s) 1055, 1152, 1424, 1527, 1646, 1732
BseRI GAGGAG 8 cut(s) 538, 926, 929, 991, 1039, 1193, 1319, 1414
BseSI GKGCMC 3 cut(s) 47, 812, 1254
BseXI GCAGC 3 cut(s) 81, 1459, 1793
Bsh1236I CGCG 3 cut(s) 392, 663, 837
Bsh1285I CGRYCG 1 cut(s) 835
BshFI GGCC 2 cut(s) 200, 635
BshNI GGYRCC 3 cut(s) 807, 1251, 1624
BsiEI CGRYCG 1 cut(s) 835
BsiHKAI GWGCWC 1 cut(s) 120
BsiHKCI CYCGRG 1 cut(s) 479
BsiSI CCGG 3 cut(s) 63, 493, 1068
BslFI GGGAC 6 cut(s) 298, 1015, 1086, 1293, 1727, 1746
BslI CCNNNNNNNGG 4 cut(s) 196, 978, 1316, 1774
BsmAI GTCTC 2 cut(s) 255, 1237
BsmBI CGTCTC 1 cut(s) 1237
BsmFI GGGAC 6 cut(s) 298, 1015, 1086, 1293, 1727, 1746
BsmI GAATGC 1 cut(s) 395
BsnI GGCC 2 cut(s) 200, 635
BsoBI CYCGRG 1 cut(s) 479
Bsp1286I GDGCHC 6 cut(s) 47, 120, 184, 812, 972, 1254
Bsp143I GATC 7 cut(s) 700, 832, 1110, 1182, 1372, 1503, 1660
Bsp19I CCATGG 2 cut(s) 1310, 1670
BspANI GGCC 2 cut(s) 200, 635
BspCNI CTCAG 6 cut(s) 206, 703, 1171, 1247, 1290, 1360
BspFNI CGCG 3 cut(s) 392, 663, 837
BspHI TCATGA 1 cut(s) 984
BspLI GGNNCC 9 cut(s) 314, 404, 809, 969, 1031, 1253, 1308, 1626, 1762
BspPI GGATC 1 cut(s) 708
BspT107I GGYRCC 3 cut(s) 807, 1251, 1624
BspTI CTTAAG 1 cut(s) 1376
BsrBI CCGCTC 2 cut(s) 216, 691
BsrDI GCAATG 3 cut(s) 858, 998, 1176
BsrFI RCCGGY 2 cut(s) 62, 1067
BsrI ACTGG 6 cut(s) 1055, 1152, 1424, 1527, 1646, 1732
BssAI RCCGGY 2 cut(s) 62, 1067
BssECI CCNNGG 5 cut(s) 390, 774, 792, 1310, 1670
BssMI GATC 7 cut(s) 700, 832, 1110, 1182, 1372, 1503, 1660
BssNI GRCGYC 1 cut(s) 1230
BssSI CACGAG 2 cut(s) 540, 686
BssT1I CCWWGG 2 cut(s) 1310, 1670
Bst2BI CACGAG 2 cut(s) 540, 686
Bst2UI CCWGG 4 cut(s) 310, 459, 637, 1702
Bst4CI ACNGT 1 cut(s) 1427
BstACI GRCGYC 1 cut(s) 1230
BstAFI CTTAAG 1 cut(s) 1376
BstC8I GCNNGC 3 cut(s) 43, 184, 593
BstDEI CTNAG 7 cut(s) 193, 711, 1158, 1234, 1270, 1298, 1347
BstDSI CCRYGG 5 cut(s) 390, 774, 792, 1310, 1670
BstEII GGTNACC 1 cut(s) 224
BstENI CCTNNNNNAGG 1 cut(s) 976
BstF5I GGATG 6 cut(s) 525, 1059, 1248, 1410, 1624, 1710
BstFNI CGCG 3 cut(s) 392, 663, 837
BstHHI GCGC 3 cut(s) 663, 839, 1680
BstKTI GATC 7 cut(s) 703, 835, 1113, 1185, 1375, 1506, 1663
BstMAI GTCTC 2 cut(s) 255, 1237
BstMBI GATC 7 cut(s) 700, 832, 1110, 1182, 1372, 1503, 1660
BstMCI CGRYCG 1 cut(s) 835
BstMWI GCNNNNNNNGC 3 cut(s) 213, 449, 641
BstNI CCWGG 4 cut(s) 310, 459, 637, 1702
BstPI GGTNACC 1 cut(s) 224
BstSCI CCNGG 4 cut(s) 308, 457, 635, 1700
BstSFI CTRYAG 1 cut(s) 1815
BstSLI GKGCMC 3 cut(s) 47, 812, 1254
BstUI CGCG 3 cut(s) 392, 663, 837
BstV1I GCAGC 3 cut(s) 81, 1459, 1793
BstV2I GAAGAC 3 cut(s) 1318, 1513, 1574
BstX2I RGATCY 2 cut(s) 700, 1182
BstYI RGATCY 2 cut(s) 700, 1182
Bsu36I CCTNAGG 1 cut(s) 1270
BsuI GTATCC 1 cut(s) 1276
BsuRI GGCC 2 cut(s) 200, 635
BtgI CCRYGG 5 cut(s) 390, 774, 792, 1310, 1670
BtgZI GCGATG 1 cut(s) 1383
BtsCI GGATG 6 cut(s) 525, 1059, 1248, 1410, 1624, 1710
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 2 cut(s) 369, 1166
Cac8I GCNNGC 3 cut(s) 43, 184, 593
CciI TCATGA 1 cut(s) 984
CfoI GCGC 3 cut(s) 663, 839, 1680
Cfr10I RCCGGY 2 cut(s) 62, 1067
Cfr13I GGNCC 4 cut(s) 107, 312, 1029, 1760
Cfr42I CCGCGG 1 cut(s) 393
CseI GACGC 1 cut(s) 1088
Csp6I GTAC 6 cut(s) 490, 547, 655, 1048, 1612, 1639
CviQI GTAC 6 cut(s) 490, 547, 655, 1048, 1612, 1639
DdeI CTNAG 7 cut(s) 193, 711, 1158, 1234, 1270, 1298, 1347
DpnI GATC 7 cut(s) 702, 834, 1112, 1184, 1374, 1505, 1662
DpnII GATC 7 cut(s) 700, 832, 1110, 1182, 1372, 1503, 1660
DraI TTTAAA 2 cut(s) 1191, 1600
EaeI YGGCCR 2 cut(s) 198, 633
EciI GGCGGA 1 cut(s) 135
Ecl136II GAGCTC 1 cut(s) 118
Eco130I CCWWGG 2 cut(s) 1310, 1670
Eco24I GRGCYC 3 cut(s) 120, 184, 972
Eco32I GATATC 2 cut(s) 241, 1060
Eco47I GGWCC 4 cut(s) 107, 312, 1029, 1760
Eco53kI GAGCTC 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 308
Eco81I CCTNAGG 1 cut(s) 1270
Eco88I CYCGRG 1 cut(s) 479
Eco91I GGTNACC 1 cut(s) 224
EcoICRI GAGCTC 1 cut(s) 118
EcoNI CCTNNNNNAGG 1 cut(s) 976
EcoO109I RGGNCCY 1 cut(s) 1029
EcoO65I GGTNACC 1 cut(s) 224
EcoRII CCWGG 4 cut(s) 308, 457, 635, 1700
EcoRV GATATC 2 cut(s) 241, 1060
EcoT14I CCWWGG 2 cut(s) 1310, 1670
EcoT38I GRGCYC 3 cut(s) 120, 184, 972
ErhI CCWWGG 2 cut(s) 1310, 1670
Esp3I CGTCTC 1 cut(s) 1237
FalI AAGNNNNNCTT 4 cut(s) 194, 226, 1199, 1231
FaqI GGGAC 6 cut(s) 298, 1015, 1086, 1293, 1727, 1746
FauI CCCGC 2 cut(s) 584, 684
FauNDI CATATG 1 cut(s) 1115
FbaI TGATCA 1 cut(s) 1503
FblI GTMKAC 2 cut(s) 582, 1821
FokI GGATG 6 cut(s) 532, 1066, 1255, 1417, 1631, 1717
FriOI GRGCYC 3 cut(s) 120, 184, 972
FspBI CTAG 1 cut(s) 428
GlaI GCGC 3 cut(s) 662, 838, 1679
GsuI CTGGAG 1 cut(s) 96
HaeIII GGCC 2 cut(s) 200, 635
HapII CCGG 3 cut(s) 63, 493, 1068
HgaI GACGC 1 cut(s) 1088
HhaI GCGC 3 cut(s) 663, 839, 1680
Hin1I GRCGYC 1 cut(s) 1230
Hin6I GCGC 3 cut(s) 661, 837, 1678
HinP1I GCGC 3 cut(s) 661, 837, 1678
HincII GTYRAC 2 cut(s) 789, 1822
HindII GTYRAC 2 cut(s) 789, 1822
HindIII AAGCTT 1 cut(s) 1807
HinfI GANTC 4 cut(s) 538, 821, 936, 1459
HpaII CCGG 3 cut(s) 63, 493, 1068
HphI GGTGA 5 cut(s) 126, 544, 1439, 1516, 1567
Hpy166II GTNNAC 4 cut(s) 583, 789, 1639, 1822
Hpy188I TCNGA 8 cut(s) 163, 288, 700, 727, 881, 941, 1294, 1443
Hpy8I GTNNAC 4 cut(s) 583, 789, 1639, 1822
Hpy99I CGWCG 1 cut(s) 1661
HpyAV CCTTC 9 cut(s) 229, 241, 634, 748, 822, 1159, 1233, 1438, 1795
HpyCH4III ACNGT 1 cut(s) 1427
HpyCH4IV ACGT 3 cut(s) 438, 1230, 1431
HpyCH4V TGCA 4 cut(s) 19, 84, 1685, 1719
HpyF10VI GCNNNNNNNGC 3 cut(s) 213, 449, 641
HpyF3I CTNAG 7 cut(s) 193, 711, 1158, 1234, 1270, 1298, 1347
HpySE526I ACGT 3 cut(s) 438, 1230, 1431
Hsp92I GRCGYC 1 cut(s) 1230
HspAI GCGC 3 cut(s) 661, 837, 1678
Ksp22I TGATCA 1 cut(s) 1503
KspI CCGCGG 1 cut(s) 393
Kzo9I GATC 7 cut(s) 700, 832, 1110, 1182, 1372, 1503, 1660
LmnI GCTCC 5 cut(s) 221, 360, 408, 967, 1306
Lsp1109I GCAGC 3 cut(s) 81, 1459, 1793
LweI GCATC 2 cut(s) 760, 1537
MaeI CTAG 1 cut(s) 428
MaeII ACGT 3 cut(s) 438, 1230, 1431
MaeIII GTNAC 3 cut(s) 224, 1226, 1427
MalI GATC 7 cut(s) 702, 834, 1112, 1184, 1374, 1505, 1662
MbiI CCGCTC 2 cut(s) 216, 691
MboI GATC 7 cut(s) 700, 832, 1110, 1182, 1372, 1503, 1660
MboII GAAGA 5 cut(s) 482, 1219, 1318, 1513, 1579
MflI RGATCY 2 cut(s) 700, 1182
MhlI GDGCHC 6 cut(s) 47, 120, 184, 812, 972, 1254
MlsI TGGCCA 1 cut(s) 635
MluCI AATT 7 cut(s) 563, 670, 736, 1483, 1561, 1724, 1799
MluNI TGGCCA 1 cut(s) 635
MlyI GAGTC 2 cut(s) 532, 945
Mox20I TGGCCA 1 cut(s) 635
MroXI GAANNNNTTC 3 cut(s) 474, 872, 1800
MscI TGGCCA 1 cut(s) 635
MseI TTAA 4 cut(s) 1041, 1190, 1377, 1599
Msp20I TGGCCA 1 cut(s) 635
MspA1I CMGCKG 2 cut(s) 197, 392
MspCI CTTAAG 1 cut(s) 1376
MspI CCGG 3 cut(s) 63, 493, 1068
MspR9I CCNGG 4 cut(s) 310, 459, 637, 1702
Mva1269I GAATGC 1 cut(s) 395
MvaI CCWGG 4 cut(s) 310, 459, 637, 1702
MvnI CGCG 3 cut(s) 392, 663, 837
MwoI GCNNNNNNNGC 3 cut(s) 213, 449, 641
NcoI CCATGG 2 cut(s) 1310, 1670
NdeI CATATG 1 cut(s) 1115
NdeII GATC 7 cut(s) 700, 832, 1110, 1182, 1372, 1503, 1660
NlaIV GGNNCC 9 cut(s) 314, 404, 809, 969, 1031, 1253, 1308, 1626, 1762
NmuCI GTSAC 2 cut(s) 1226, 1427
PaeR7I CTCGAG 1 cut(s) 479
PagI TCATGA 1 cut(s) 984
PctI GAATGC 1 cut(s) 395
PdmI GAANNNNTTC 3 cut(s) 474, 872, 1800
PfeI GAWTC 2 cut(s) 821, 1459
PflFI GACNNNGTC 1 cut(s) 1769
PflMI CCANNNNNTGG 1 cut(s) 1774
PfoI TCCNGGA 1 cut(s) 1700
Ple19I CGATCG 1 cut(s) 835
PleI GAGTC 2 cut(s) 532, 944
PpsI GAGTC 2 cut(s) 532, 944
PpuMI RGGWCCY 1 cut(s) 1029
Psp124BI GAGCTC 1 cut(s) 120
Psp5II RGGWCCY 1 cut(s) 1029
Psp6I CCWGG 4 cut(s) 308, 457, 635, 1700
PspEI GGTNACC 1 cut(s) 224
PspGI CCWGG 4 cut(s) 308, 457, 635, 1700
PspN4I GGNNCC 9 cut(s) 314, 404, 809, 969, 1031, 1253, 1308, 1626, 1762
PspPI GGNCC 4 cut(s) 107, 312, 1029, 1760
PspPPI RGGWCCY 1 cut(s) 1029
PsuI RGATCY 2 cut(s) 700, 1182
PsyI GACNNNGTC 1 cut(s) 1769
PvuI CGATCG 1 cut(s) 835
RsaI GTAC 6 cut(s) 491, 548, 656, 1049, 1613, 1640
RsaNI GTAC 6 cut(s) 490, 547, 655, 1048, 1612, 1639
SacI GAGCTC 1 cut(s) 120
SacII CCGCGG 1 cut(s) 393
SalI GTCGAC 1 cut(s) 1820
SaqAI TTAA 4 cut(s) 1041, 1190, 1377, 1599
Sau3AI GATC 7 cut(s) 700, 832, 1110, 1182, 1372, 1503, 1660
Sau96I GGNCC 4 cut(s) 107, 312, 1029, 1760
ScaI AGTACT 1 cut(s) 1049
SchI GAGTC 2 cut(s) 532, 945
ScrFI CCNGG 4 cut(s) 310, 459, 637, 1702
SduI GDGCHC 6 cut(s) 47, 120, 184, 812, 972, 1254
SfaNI GCATC 2 cut(s) 760, 1537
SfcI CTRYAG 1 cut(s) 1815
Sfr274I CTCGAG 1 cut(s) 479
Sfr303I CCGCGG 1 cut(s) 393
SgrAI CRCCGGYG 1 cut(s) 62
SgrBI CCGCGG 1 cut(s) 393
SinI GGWCC 4 cut(s) 107, 312, 1029, 1760
SlaI CTCGAG 1 cut(s) 479
SmlI CTYRAG 4 cut(s) 335, 479, 973, 1376
SmoI CTYRAG 4 cut(s) 335, 479, 973, 1376
Sse9I AATT 7 cut(s) 563, 670, 736, 1483, 1561, 1724, 1799
SspMI CTAG 1 cut(s) 428
SstI GAGCTC 1 cut(s) 120
StyD4I CCNGG 4 cut(s) 308, 457, 635, 1700
StyI CCWWGG 2 cut(s) 1310, 1670
TaaI ACNGT 1 cut(s) 1427
TaiI ACGT 3 cut(s) 441, 1233, 1434
TaqI TCGA 6 cut(s) 151, 480, 1140, 1339, 1464, 1821
TasI AATT 7 cut(s) 563, 670, 736, 1483, 1561, 1724, 1799
TatI WGTACW 2 cut(s) 1047, 1638
TauI GCSGC 8 cut(s) 59, 62, 200, 210, 395, 446, 591, 800
TfiI GAWTC 2 cut(s) 821, 1459
Tru1I TTAA 4 cut(s) 1041, 1190, 1377, 1599
Tru9I TTAA 4 cut(s) 1041, 1190, 1377, 1599
TscAI CASTG 2 cut(s) 376, 1166
TseFI GTSAC 2 cut(s) 1226, 1427
TseI GCWGC 3 cut(s) 69, 1472, 1781
Tsp45I GTSAC 2 cut(s) 1226, 1427
TspDTI ATGAA 6 cut(s) 146, 968, 973, 1001, 1274, 1664
TspGWI ACGGA 3 cut(s) 19, 291, 805
TspRI CASTG 2 cut(s) 376, 1166
Tth111I GACNNNGTC 1 cut(s) 1769
Van91I CCANNNNNTGG 1 cut(s) 1774
Vha464I CTTAAG 1 cut(s) 1376
VpaK11BI GGWCC 4 cut(s) 107, 312, 1029, 1760
XagI CCTNNNNNAGG 1 cut(s) 976
XapI RAATTY 3 cut(s) 736, 1483, 1724
XhoI CTCGAG 1 cut(s) 479
XmiI GTMKAC 2 cut(s) 582, 1821
XmnI GAANNNNTTC 3 cut(s) 474, 872, 1800
XspI CTAG 1 cut(s) 428
ZraI GACGTC 1 cut(s) 1231
ZrmI AGTACT 1 cut(s) 1049
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.