MD06G1234000.v1.1

Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0024259
Physical Location & Seq
Forward (+)
36522886 .. 36524995
2110 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1234000.v1.1.491

Sequence Viewer

Length: 1215 bp
ATGGCGGATAAGATTCCGAGACTGGGTGGCAACCATTTCATGGCTGATATAAATCCAGCAGATTCGATGGAGAGGAGGACTTCTATGGAAAGACCAAGTGAAAATCAAGAAATTATGATTTCCAACTCCAACAAAAATTCCACTGCTGAAACTACATACCAGATTTTCGCGGGTTCCTGGAATGTTGGAGGTGTTTCACCTCCAGATTATTTGGACATACAGGGTTGGCTCCGACCTAATAATATTAAACCTCCAGCTAATATCTACGTCCTCGGGTTCCAAGAAATTGTACCACTGAATGCAGGAAATGTTGTGAGATCTGAAAACCGCAAGGTTTGTGAGAAATGGAATTCGTTGATCGGAGCAGCTCTTAACGATAAGAAGAATAAGCTTACAGAAGATGAAGAAGAAGAAGGAGATTTCCGATGCATCATCAGTAAGCAAATGGTTGGAATATTTATATCTGTTTGGCTTTCAAGTGATCTCTGCCAATACATAAGACATCTCAGTGTCTCATGTGTTGGCTGTGGTATCATGGGCCGCCTAGGGAACAAGGGTTCAGTGTCAGTGAGATTTTGGTTGCTTGAAACAAGCTTCTGTTTTGTGTGTAGCCATCTAGCTTCTGGAGATAAAAAAAGCGATAAGAGACGAAGAAATGCAAACGTCACTGAGATTTTGTCTCGAACAACCTTTCCTCCTGGACCCTTCACTAATTTGACCACAAAAATTCTTGATCACGAGGTGATTTGGCTTGGAGACCTAAACTACAGAATCTACCTGCCTGACGCCACAACGCAGGATCTTGTGGAGAAGCAAAAGTGGAAGCTTTTGTTGGAATATGATCAACTTAAGACGGAGCTCATGGAAGGACATGTATTCGAAGGTTGGCAGGAAGGAGAAATAAACTTCGCTCCTAGCTACAAATATTACCCGAATTCGGGACTGTACTTTGGCCGTGATCACAAGAGAAAACACAAAAAAAGGCGTGCTCCGGCGTGGTGCGATCGAATACTATGGTTCGGGAAAGGACTCGAGCAAAACCAGTACGAAAGAGTAGAATCAAGACTATCAGACCACAGACCCATCCGGGCAATTTTTATGGCAGAAATTGAGGTGTTGAGAGCTCCTGAAGGACTTCATAGCTTTTTGTCAGACAATTTTATATGCTTGCCAAACGATTTCGATGAATGTTTCTGTGACAAAATATTCACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00562 ko01100 ko04070 map00562 map01100 map04070
Pfam Domains
Protein Families
Exo_endo_phos

Protein Analysis

405

Amino Acids

46.43

Weight (kDa)

6.53

Isoelectric Point (pI)

51.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos2 PF22669 59 - 364 1.3e-68 Endonuclease/Exonuclease/phosphatase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024259)

Species Orthologous Gene IDs
malus_domestica MD06G1234000.v1.1 MD14G1240700.v1.1
prunus_persica Prupe.5G238500_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 786
AccB7I CCANNNNNTGG 1 cut(s) 40
AccII CGCG 1 cut(s) 170
AciI CCGC 4 cut(s) 5, 170, 328, 541
AclWI GGATC 1 cut(s) 807
AcoI YGGCCR 1 cut(s) 952
AcsI RAATTY 4 cut(s) 136, 349, 726, 934
AcuI CTGAAG 1 cut(s) 1149
AcyI GRCGYC 1 cut(s) 786
AdeI CACNNNGTG 1 cut(s) 742
AfaI GTAC 3 cut(s) 291, 947, 1046
AfiI CCNNNNNNNGG 4 cut(s) 23, 40, 937, 938
AflII CTTAAG 1 cut(s) 848
AflIII ACRYGT 1 cut(s) 871
AgsI TTSAA 2 cut(s) 477, 587
AjnI CCWGG 2 cut(s) 176, 697
AjuI GAANNNNNNNTTGG 2 cut(s) 815, 847
AloI GAACNNNNNNTCC 4 cut(s) 541, 573, 676, 708
Alw21I GWGCWC 3 cut(s) 861, 991, 1126
Alw26I GTCTC 5 cut(s) 13, 517, 640, 684, 750
AlwI GGATC 1 cut(s) 807
Ama87I CYCGRG 2 cut(s) 272, 1031
AoxI GGCC 2 cut(s) 538, 952
ApeKI GCWGC 1 cut(s) 365
ApoI RAATTY 4 cut(s) 136, 349, 726, 934
Asp700I GAANNNNTTC 1 cut(s) 1134
AspA2I CCTAGG 1 cut(s) 544
AspS9I GGNCC 2 cut(s) 538, 701
AsuC2I CCSGG 1 cut(s) 1088
AsuHPI GGTGA 2 cut(s) 189, 754
AsuII TTCGAA 1 cut(s) 879
AvaI CYCGRG 2 cut(s) 272, 1031
AvaII GGWCC 1 cut(s) 701
AvrII CCTAGG 1 cut(s) 544
BanII GRGCYC 2 cut(s) 861, 1126
BauI CACGAG 1 cut(s) 737
Bbv12I GWGCWC 3 cut(s) 861, 991, 1126
BbvI GCAGC 1 cut(s) 377
BccI CCATC 3 cut(s) 61, 621, 1091
BceAI ACGGC 1 cut(s) 939
BciT130I CCWGG 2 cut(s) 178, 699
BclI TGATCA 3 cut(s) 733, 841, 958
BcnI CCSGG 1 cut(s) 1088
BcoDI GTCTC 5 cut(s) 13, 517, 640, 684, 750
BfaI CTAG 3 cut(s) 545, 617, 915
BfmI CTRYAG 1 cut(s) 766
BfrI CTTAAG 1 cut(s) 848
BfuAI ACCTGC 1 cut(s) 786
BglII AGATCT 1 cut(s) 317
BisI GCNGC 2 cut(s) 366, 541
BlnI CCTAGG 1 cut(s) 544
BlsI GCNGC 2 cut(s) 367, 542
Bme1390I CCNGG 3 cut(s) 178, 699, 1088
Bme18I GGWCC 1 cut(s) 701
BmeT110I CYCGRG 2 cut(s) 272, 1031
BmgT120I GGNCC 2 cut(s) 538, 701
BmiI GGNNCC 4 cut(s) 175, 230, 278, 703
BmrFI CCNGG 3 cut(s) 178, 699, 1088
BmrI ACTGGG 1 cut(s) 32
BmsI GCATC 2 cut(s) 416, 438
BmuI ACTGGG 1 cut(s) 32
BpmI CTGGAG 3 cut(s) 186, 237, 645
Bpu14I TTCGAA 1 cut(s) 879
BpuMI CCSGG 1 cut(s) 1088
BsaAI YACGTR 1 cut(s) 1212
BsaBI GATNNNNATC 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 786
BsaI GGTCTC 1 cut(s) 750
BsaJI CCNNGG 2 cut(s) 271, 544
BsaXI ACNNNNNCTCC 2 cut(s) 679, 709
Bsc4I CCNNNNNNNGG 4 cut(s) 23, 40, 937, 938
Bse1I ACTGG 2 cut(s) 27, 1042
Bse8I GATNNNNATC 1 cut(s) 51
BseBI CCWGG 2 cut(s) 178, 699
BseDI CCNNGG 2 cut(s) 271, 544
BseGI GGATG 1 cut(s) 1083
BseJI GATNNNNATC 1 cut(s) 51
BseLI CCNNNNNNNGG 4 cut(s) 23, 40, 937, 938
BseMII CTCAG 2 cut(s) 520, 660
BseNI ACTGG 2 cut(s) 27, 1042
BseRI GAGGAG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 377
Bsh1236I CGCG 1 cut(s) 170
Bsh1285I CGRYCG 1 cut(s) 1006
BshFI GGCC 2 cut(s) 540, 954
BsiEI CGRYCG 1 cut(s) 1006
BsiHKAI GWGCWC 3 cut(s) 861, 991, 1126
BsiHKCI CYCGRG 2 cut(s) 272, 1031
BsiSI CCGG 2 cut(s) 992, 1087
BslFI GGGAC 1 cut(s) 954
BslI CCNNNNNNNGG 4 cut(s) 23, 40, 937, 938
BsmAI GTCTC 5 cut(s) 13, 517, 640, 684, 750
BsmBI CGTCTC 1 cut(s) 640
BsmFI GGGAC 1 cut(s) 954
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 2 cut(s) 540, 954
Bso31I GGTCTC 1 cut(s) 750
BsoBI CYCGRG 2 cut(s) 272, 1031
Bsp119I TTCGAA 1 cut(s) 879
Bsp1286I GDGCHC 3 cut(s) 861, 991, 1126
Bsp143I GATC 8 cut(s) 317, 357, 481, 733, 799, 841, 958, 1003
BspACI CCGC 4 cut(s) 5, 170, 328, 541
BspANI GGCC 2 cut(s) 540, 954
BspCNI CTCAG 2 cut(s) 519, 661
BspFNI CGCG 1 cut(s) 170
BspLI GGNNCC 4 cut(s) 175, 230, 278, 703
BspMI ACCTGC 1 cut(s) 786
BspPI GGATC 1 cut(s) 807
BspT104I TTCGAA 1 cut(s) 879
BspTI CTTAAG 1 cut(s) 848
BspTNI GGTCTC 1 cut(s) 750
BsrI ACTGG 2 cut(s) 27, 1042
BssECI CCNNGG 2 cut(s) 271, 544
BssMI GATC 8 cut(s) 317, 357, 481, 733, 799, 841, 958, 1003
BssNI GRCGYC 1 cut(s) 786
BssSI CACGAG 1 cut(s) 737
BssT1I CCWWGG 1 cut(s) 544
Bst2BI CACGAG 1 cut(s) 737
Bst2UI CCWGG 2 cut(s) 178, 699
Bst4CI ACNGT 1 cut(s) 945
BstACI GRCGYC 1 cut(s) 786
BstAFI CTTAAG 1 cut(s) 848
BstBAI YACGTR 1 cut(s) 1212
BstBI TTCGAA 1 cut(s) 879
BstC8I GCNNGC 2 cut(s) 987, 1169
BstDEI CTNAG 2 cut(s) 506, 669
BstF5I GGATG 1 cut(s) 1083
BstFNI CGCG 1 cut(s) 170
BstKTI GATC 8 cut(s) 320, 360, 484, 736, 802, 844, 961, 1006
BstMAI GTCTC 5 cut(s) 13, 517, 640, 684, 750
BstMBI GATC 8 cut(s) 317, 357, 481, 733, 799, 841, 958, 1003
BstMCI CGRYCG 1 cut(s) 1006
BstNI CCWGG 2 cut(s) 178, 699
BstNSI RCATGY 1 cut(s) 875
BstSCI CCNGG 3 cut(s) 176, 697, 1086
BstSFI CTRYAG 1 cut(s) 766
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 377
BstX2I RGATCY 2 cut(s) 317, 799
BstYI RGATCY 2 cut(s) 317, 799
BsuRI GGCC 2 cut(s) 540, 954
BtsCI GGATG 1 cut(s) 1083
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 6 cut(s) 141, 293, 514, 567, 573, 666
BveI ACCTGC 1 cut(s) 786
Cac8I GCNNGC 2 cut(s) 987, 1169
Cfr13I GGNCC 2 cut(s) 538, 701
CseI GACGC 1 cut(s) 794
Csp6I GTAC 3 cut(s) 290, 946, 1045
CviAII CATG 5 cut(s) 40, 516, 535, 862, 872
CviQI GTAC 3 cut(s) 290, 946, 1045
DdeI CTNAG 2 cut(s) 506, 669
DpnI GATC 8 cut(s) 319, 359, 483, 735, 801, 843, 960, 1005
DpnII GATC 8 cut(s) 317, 357, 481, 733, 799, 841, 958, 1003
DraIII CACNNNGTG 1 cut(s) 742
EaeI YGGCCR 1 cut(s) 952
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 2 cut(s) 859, 1124
Eco130I CCWWGG 1 cut(s) 544
Eco24I GRGCYC 2 cut(s) 861, 1126
Eco31I GGTCTC 1 cut(s) 750
Eco47I GGWCC 1 cut(s) 701
Eco53kI GAGCTC 2 cut(s) 859, 1124
Eco57I CTGAAG 1 cut(s) 1149
Eco88I CYCGRG 2 cut(s) 272, 1031
EcoICRI GAGCTC 2 cut(s) 859, 1124
EcoRI GAATTC 2 cut(s) 349, 934
EcoRII CCWGG 2 cut(s) 176, 697
EcoT14I CCWWGG 1 cut(s) 544
EcoT22I ATGCAT 1 cut(s) 431
EcoT38I GRGCYC 2 cut(s) 861, 1126
ErhI CCWWGG 1 cut(s) 544
Esp3I CGTCTC 1 cut(s) 640
FaeI CATG 5 cut(s) 43, 519, 538, 865, 875
FaqI GGGAC 1 cut(s) 954
FatI CATG 5 cut(s) 39, 515, 534, 861, 871
FauI CCCGC 1 cut(s) 163
FbaI TGATCA 3 cut(s) 733, 841, 958
Fnu4HI GCNGC 2 cut(s) 366, 541
FokI GGATG 1 cut(s) 1070
FriOI GRGCYC 2 cut(s) 861, 1126
Fsp4HI GCNGC 2 cut(s) 366, 541
FspBI CTAG 3 cut(s) 545, 617, 915
GluI GCNGC 2 cut(s) 366, 541
GsuI CTGGAG 3 cut(s) 186, 237, 645
HaeIII GGCC 2 cut(s) 540, 954
HapII CCGG 2 cut(s) 992, 1087
HgaI GACGC 1 cut(s) 794
Hin1I GRCGYC 1 cut(s) 786
Hin1II CATG 5 cut(s) 43, 519, 538, 865, 875
HindIII AAGCTT 3 cut(s) 389, 592, 824
HinfI GANTC 5 cut(s) 13, 62, 771, 1029, 1058
HpaII CCGG 2 cut(s) 992, 1087
HphI GGTGA 2 cut(s) 189, 754
Hpy188I TCNGA 7 cut(s) 18, 233, 322, 362, 425, 1072, 1153
HpyAV CCTTC 6 cut(s) 407, 715, 860, 875, 887, 1124
HpyCH4III ACNGT 1 cut(s) 945
HpyCH4IV ACGT 3 cut(s) 267, 663, 1211
HpyCH4V TGCA 3 cut(s) 302, 429, 659
HpyF3I CTNAG 2 cut(s) 506, 669
HpySE526I ACGT 3 cut(s) 267, 663, 1211
Hsp92I GRCGYC 1 cut(s) 786
Hsp92II CATG 5 cut(s) 43, 519, 538, 865, 875
Ksp22I TGATCA 3 cut(s) 733, 841, 958
Kzo9I GATC 8 cut(s) 317, 357, 481, 733, 799, 841, 958, 1003
LmnI GCTCC 6 cut(s) 234, 362, 856, 916, 994, 1129
Lsp1109I GCAGC 1 cut(s) 377
LweI GCATC 2 cut(s) 416, 438
MaeI CTAG 3 cut(s) 545, 617, 915
MaeII ACGT 3 cut(s) 267, 663, 1211
MaeIII GTNAC 2 cut(s) 664, 1196
MalI GATC 8 cut(s) 319, 359, 483, 735, 801, 843, 960, 1005
MboI GATC 8 cut(s) 317, 357, 481, 733, 799, 841, 958, 1003
MboII GAAGA 6 cut(s) 394, 410, 416, 419, 422, 663
MflI RGATCY 2 cut(s) 317, 799
MhlI GDGCHC 3 cut(s) 861, 991, 1126
MlyI GAGTC 1 cut(s) 1023
MmeI TCCRAC 6 cut(s) 147, 153, 166, 256, 430, 813
MnlI CCTC 9 cut(s) 66, 69, 182, 210, 261, 281, 705, 733, 1105
Mph1103I ATGCAT 1 cut(s) 431
MroXI GAANNNNTTC 1 cut(s) 1134
MseI TTAA 3 cut(s) 246, 372, 849
MslI CAYNNNNRTG 1 cut(s) 507
MspCI CTTAAG 1 cut(s) 848
MspI CCGG 2 cut(s) 992, 1087
MspR9I CCNGG 3 cut(s) 178, 699, 1088
Mva1269I GAATGC 1 cut(s) 304
MvaI CCWGG 2 cut(s) 178, 699
MvnI CGCG 1 cut(s) 170
NciI CCSGG 1 cut(s) 1088
NdeII GATC 8 cut(s) 317, 357, 481, 733, 799, 841, 958, 1003
NlaIII CATG 5 cut(s) 43, 519, 538, 865, 875
NlaIV GGNNCC 4 cut(s) 175, 230, 278, 703
NmuCI GTSAC 2 cut(s) 664, 1196
NsiI ATGCAT 1 cut(s) 431
NspI RCATGY 1 cut(s) 875
NspV TTCGAA 1 cut(s) 879
PaeR7I CTCGAG 1 cut(s) 1031
PciI ACATGT 1 cut(s) 871
PctI GAATGC 1 cut(s) 304
PdmI GAANNNNTTC 1 cut(s) 1134
PfeI GAWTC 4 cut(s) 13, 62, 771, 1058
PflMI CCANNNNNTGG 1 cut(s) 40
PfoI TCCNGGA 2 cut(s) 176, 697
PkrI GCNGC 2 cut(s) 367, 542
Ple19I CGATCG 1 cut(s) 1006
PleI GAGTC 1 cut(s) 1023
PpsI GAGTC 1 cut(s) 1023
Ppu21I YACGTR 1 cut(s) 1212
PscI ACATGT 1 cut(s) 871
Psp124BI GAGCTC 2 cut(s) 861, 1126
Psp6I CCWGG 2 cut(s) 176, 697
PspGI CCWGG 2 cut(s) 176, 697
PspN4I GGNNCC 4 cut(s) 175, 230, 278, 703
PspPI GGNCC 2 cut(s) 538, 701
PspXI VCTCGAGB 1 cut(s) 1031
PsuI RGATCY 2 cut(s) 317, 799
PvuI CGATCG 1 cut(s) 1006
RsaI GTAC 3 cut(s) 291, 947, 1046
RsaNI GTAC 3 cut(s) 290, 946, 1045
RseI CAYNNNNRTG 1 cut(s) 507
SacI GAGCTC 2 cut(s) 861, 1126
SaqAI TTAA 3 cut(s) 246, 372, 849
SatI GCNGC 2 cut(s) 366, 541
Sau3AI GATC 8 cut(s) 317, 357, 481, 733, 799, 841, 958, 1003
Sau96I GGNCC 2 cut(s) 538, 701
SchI GAGTC 1 cut(s) 1023
ScrFI CCNGG 3 cut(s) 178, 699, 1088
SduI GDGCHC 3 cut(s) 861, 991, 1126
SfaNI GCATC 2 cut(s) 416, 438
SfcI CTRYAG 1 cut(s) 766
Sfr274I CTCGAG 1 cut(s) 1031
SfuI TTCGAA 1 cut(s) 879
SinI GGWCC 1 cut(s) 701
SlaI CTCGAG 1 cut(s) 1031
SmiMI CAYNNNNRTG 1 cut(s) 507
SmlI CTYRAG 2 cut(s) 848, 1031
SmoI CTYRAG 2 cut(s) 848, 1031
SsiI CCGC 4 cut(s) 5, 170, 328, 541
SspI AATATT 4 cut(s) 244, 456, 926, 1206
SspMI CTAG 3 cut(s) 545, 617, 915
SstI GAGCTC 2 cut(s) 861, 1126
StyD4I CCNGG 3 cut(s) 176, 697, 1086
StyI CCWWGG 1 cut(s) 544
TaaI ACNGT 1 cut(s) 945
TaiI ACGT 3 cut(s) 270, 666, 1214
TaqI TCGA 6 cut(s) 65, 682, 879, 1006, 1032, 1182
TatI WGTACW 1 cut(s) 945
TauI GCSGC 1 cut(s) 543
TfiI GAWTC 4 cut(s) 13, 62, 771, 1058
Tru1I TTAA 3 cut(s) 246, 372, 849
Tru9I TTAA 3 cut(s) 246, 372, 849
TscAI CASTG 6 cut(s) 148, 300, 514, 567, 573, 673
TseFI GTSAC 2 cut(s) 664, 1196
TseI GCWGC 1 cut(s) 365
Tsp45I GTSAC 2 cut(s) 664, 1196
TspDTI ATGAA 4 cut(s) 28, 417, 1127, 1200
TspGWI ACGGA 1 cut(s) 869
TspRI CASTG 6 cut(s) 148, 300, 514, 567, 573, 673
Van91I CCANNNNNTGG 1 cut(s) 40
Vha464I CTTAAG 1 cut(s) 848
VpaK11BI GGWCC 1 cut(s) 701
XapI RAATTY 4 cut(s) 136, 349, 726, 934
XceI RCATGY 1 cut(s) 875
XcmI CCANNNNNNNNNTGG 1 cut(s) 620
XhoI CTCGAG 1 cut(s) 1031
XmaJI CCTAGG 1 cut(s) 544
XmnI GAANNNNTTC 1 cut(s) 1134
XspI CTAG 3 cut(s) 545, 617, 915
Zsp2I ATGCAT 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.