MD14G1240700.v1.1

Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0024259
Physical Location & Seq
Forward (+)
31960091 .. 31961816
1726 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1240700.v1.1.491

Sequence Viewer

Length: 1026 bp
ATGGATCTGATCAGGATCTTCGCGGGTTCCTGGAATGTTGGAGGTGTTTCACCTCCAGAGTACTATTTGGACATACAAGGTTGGCTCCGACCTAATAATATTAACCCTCCAGCTAATATCTACGTCCTTGGGTTCCAAGAAATTGTACCACTGAATGTGGGAAATGTTGTGCGATCCGAAAACCGCAAAGTTTGTGAGAAATGGAATTCGTTGATCGGAGCTGCTCTTAACGATAAGAAGAATAAGATTACAGAAGACAAAGAAGAAGAAGAAGAAGAAGGAGGAGACGATGAAGAAGATTTCCGATGCATCATTAGTAGGCAAATGGTTGGAATATTTATATCTGTTTGGGTTTCAAGTGATCTATGCCAATACATAAGACATCTCAGTGTCTCATGTGTTGGCTGTGGTATCATGGGTTACCTAGGGAACAAGGGTTCGGTGTCAGTGAGATTTTGGTTACATGAAACAAGCTTTTGTTTTGTGTGTAGCCATCTAGCTTCTGGTGGTAAGAAAGGAGATGAGAGACGAAGAAATGCAGACGTCGCTGAGATTTTGTCTCGAACAACCTTTCCTGCAGGACCTTTCACTAATTTCTCCACAAAAATTCTTGATTACGATAGGGTAATTTGGCTTGGAGACCTAAACTACAGAATCTGCTTGCCTGATGCCACAACGCAATATCTTGTGGAGAAGCAAAAGTGGAACCTTTTGTTGGAATATGATCAGCTTAAGGTGGAGCTCATGGAAGGACGTGTATTCGAAGGTTGGCATGAAGGACTAATAAACTTTGCTCCAAGCTACAAATATTACCCAAATTCGGGGCTTTACTTTGGCTGTGATCAGAAGAGAAAATACAAAAGGCGTGCTCCGGCATGGTGTGATCGAATACTATGGTTCGGGAAGGGACTCGAGCAAAAGCAGTATGAAAGAGTCGAATCAAGATTATCAGACCATAGACCCGTCCGAGCGATTTTTATGGCAGAAACTGAGGTCTTGAGAGCTCCTAAAGGAATTCACAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00562 ko01100 ko04070 map00562 map01100 map04070
Pfam Domains
Protein Families
Exo_endo_phos

Protein Analysis

342

Amino Acids

39.25

Weight (kDa)

6.62

Isoelectric Point (pI)

52.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos2 PF22669 10 - 324 2.7e-67 Endonuclease/Exonuclease/phosphatase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024259)

Species Orthologous Gene IDs
malus_domestica MD06G1234000.v1.1 MD14G1240700.v1.1
prunus_persica Prupe.5G238500_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 546
AccII CGCG 1 cut(s) 23
AciI CCGC 2 cut(s) 23, 184
AclWI GGATC 3 cut(s) 12, 23, 168
AcsI RAATTY 4 cut(s) 205, 606, 817, 1014
AcyI GRCGYC 1 cut(s) 543
AfaI GTAC 2 cut(s) 62, 147
AfiI CCNNNNNNNGG 3 cut(s) 715, 820, 821
AflII CTTAAG 1 cut(s) 731
AflIII ACRYGT 1 cut(s) 754
AgsI TTSAA 1 cut(s) 357
AjiI CACGTC 1 cut(s) 755
AjnI CCWGG 1 cut(s) 29
AjuI GAANNNNNNNTTGG 2 cut(s) 698, 730
AloI GAACNNNNNNTCC 4 cut(s) 421, 453, 556, 588
AluBI AGCT 9 cut(s) 113, 221, 474, 500, 730, 742, 801, 1004, 1023
AluI AGCT 9 cut(s) 113, 221, 474, 500, 730, 742, 801, 1004, 1023
Alw21I GWGCWC 3 cut(s) 744, 871, 1006
Alw26I GTCTC 5 cut(s) 279, 397, 520, 564, 633
AlwI GGATC 3 cut(s) 12, 23, 168
AlwNI CAGNNNCTG 2 cut(s) 657, 989
Ama87I CYCGRG 1 cut(s) 911
ApeKI GCWGC 1 cut(s) 221
ApoI RAATTY 4 cut(s) 205, 606, 817, 1014
AspA2I CCTAGG 1 cut(s) 424
AspS9I GGNCC 1 cut(s) 581
AsuHPI GGTGA 1 cut(s) 42
AsuII TTCGAA 1 cut(s) 762
AvaI CYCGRG 1 cut(s) 911
AvaII GGWCC 1 cut(s) 581
AvrII CCTAGG 1 cut(s) 424
BanII GRGCYC 2 cut(s) 744, 1006
BarI GAAGNNNNNNTAC 2 cut(s) 839, 871
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 3 cut(s) 744, 871, 1006
BbvI GCAGC 1 cut(s) 208
BccI CCATC 1 cut(s) 501
BciT130I CCWGG 1 cut(s) 31
BclI TGATCA 3 cut(s) 9, 724, 841
BcoDI GTCTC 5 cut(s) 279, 397, 520, 564, 633
BfaI CTAG 2 cut(s) 425, 497
BfmI CTRYAG 2 cut(s) 576, 649
BfrI CTTAAG 1 cut(s) 731
BisI GCNGC 1 cut(s) 222
BlnI CCTAGG 1 cut(s) 424
BlsI GCNGC 1 cut(s) 223
BmcAI AGTACT 1 cut(s) 62
Bme1390I CCNGG 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 581
BmeT110I CYCGRG 1 cut(s) 911
BmgBI CACGTC 1 cut(s) 755
BmgT120I GGNCC 1 cut(s) 581
BmiI GGNNCC 4 cut(s) 28, 86, 134, 707
BmrFI CCNGG 1 cut(s) 31
BmsI GCATC 3 cut(s) 296, 318, 658
BpiI GAAGAC 1 cut(s) 261
BpmI CTGGAG 2 cut(s) 39, 93
Bpu14I TTCGAA 1 cut(s) 762
BpuEI CTTGAG 1 cut(s) 1018
BsaBI GATNNNNATC 1 cut(s) 14
BsaHI GRCGYC 1 cut(s) 543
BsaI GGTCTC 1 cut(s) 633
BsaJI CCNNGG 2 cut(s) 127, 424
Bsc4I CCNNNNNNNGG 3 cut(s) 715, 820, 821
Bse8I GATNNNNATC 1 cut(s) 14
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 2 cut(s) 127, 424
BseJI GATNNNNATC 1 cut(s) 14
BseLI CCNNNNNNNGG 3 cut(s) 715, 820, 821
BseMII CTCAG 3 cut(s) 400, 540, 981
BseRI GAGGAG 1 cut(s) 297
BseXI GCAGC 1 cut(s) 208
Bsh1236I CGCG 1 cut(s) 23
BsiHKAI GWGCWC 3 cut(s) 744, 871, 1006
BsiHKCI CYCGRG 1 cut(s) 911
BsiSI CCGG 1 cut(s) 872
BslFI GGGAC 1 cut(s) 921
BslI CCNNNNNNNGG 3 cut(s) 715, 820, 821
BsmAI GTCTC 5 cut(s) 279, 397, 520, 564, 633
BsmBI CGTCTC 2 cut(s) 279, 520
BsmFI GGGAC 1 cut(s) 921
Bso31I GGTCTC 1 cut(s) 633
BsoBI CYCGRG 1 cut(s) 911
Bsp119I TTCGAA 1 cut(s) 762
Bsp1286I GDGCHC 3 cut(s) 744, 871, 1006
Bsp143I GATC 9 cut(s) 4, 9, 15, 173, 213, 361, 724, 841, 883
BspACI CCGC 2 cut(s) 23, 184
BspCNI CTCAG 3 cut(s) 399, 541, 982
BspFNI CGCG 1 cut(s) 23
BspLI GGNNCC 4 cut(s) 28, 86, 134, 707
BspMAI CTGCAG 1 cut(s) 580
BspPI GGATC 3 cut(s) 12, 23, 168
BspT104I TTCGAA 1 cut(s) 762
BspTI CTTAAG 1 cut(s) 731
BspTNI GGTCTC 1 cut(s) 633
BssECI CCNNGG 2 cut(s) 127, 424
BssMI GATC 9 cut(s) 4, 9, 15, 173, 213, 361, 724, 841, 883
BssNI GRCGYC 1 cut(s) 543
BssT1I CCWWGG 2 cut(s) 127, 424
Bst2UI CCWGG 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 842
BstACI GRCGYC 1 cut(s) 543
BstAFI CTTAAG 1 cut(s) 731
BstBI TTCGAA 1 cut(s) 762
BstC8I GCNNGC 2 cut(s) 662, 867
BstDEI CTNAG 3 cut(s) 386, 549, 990
BstEII GGTNACC 1 cut(s) 419
BstFNI CGCG 1 cut(s) 23
BstKTI GATC 9 cut(s) 7, 12, 18, 176, 216, 364, 727, 844, 886
BstMAI GTCTC 5 cut(s) 279, 397, 520, 564, 633
BstMBI GATC 9 cut(s) 4, 9, 15, 173, 213, 361, 724, 841, 883
BstMWI GCNNNNNNNGC 1 cut(s) 545
BstNI CCWGG 1 cut(s) 31
BstPI GGTNACC 1 cut(s) 419
BstSCI CCNGG 1 cut(s) 29
BstSFI CTRYAG 2 cut(s) 576, 649
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 208
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 2 cut(s) 4, 15
BstYI RGATCY 2 cut(s) 4, 15
BtrI CACGTC 1 cut(s) 755
BtsIMutI CAGTG 3 cut(s) 149, 394, 453
Cac8I GCNNGC 2 cut(s) 662, 867
CaiI CAGNNNCTG 2 cut(s) 657, 989
Cfr13I GGNCC 1 cut(s) 581
Csp6I GTAC 2 cut(s) 61, 146
CviAII CATG 6 cut(s) 396, 415, 464, 745, 773, 876
CviQI GTAC 2 cut(s) 61, 146
DdeI CTNAG 3 cut(s) 386, 549, 990
DpnI GATC 9 cut(s) 6, 11, 17, 175, 215, 363, 726, 843, 885
DpnII GATC 9 cut(s) 4, 9, 15, 173, 213, 361, 724, 841, 883
Eam1104I CTCTTC 1 cut(s) 842
EarI CTCTTC 1 cut(s) 842
Ecl136II GAGCTC 2 cut(s) 742, 1004
Eco130I CCWWGG 2 cut(s) 127, 424
Eco24I GRGCYC 2 cut(s) 744, 1006
Eco31I GGTCTC 1 cut(s) 633
Eco47I GGWCC 1 cut(s) 581
Eco53kI GAGCTC 2 cut(s) 742, 1004
Eco88I CYCGRG 1 cut(s) 911
Eco91I GGTNACC 1 cut(s) 419
EcoICRI GAGCTC 2 cut(s) 742, 1004
EcoO109I RGGNCCY 1 cut(s) 581
EcoO65I GGTNACC 1 cut(s) 419
EcoRI GAATTC 2 cut(s) 205, 1014
EcoRII CCWGG 1 cut(s) 29
EcoT14I CCWWGG 2 cut(s) 127, 424
EcoT22I ATGCAT 1 cut(s) 311
EcoT38I GRGCYC 2 cut(s) 744, 1006
ErhI CCWWGG 2 cut(s) 127, 424
Esp3I CGTCTC 2 cut(s) 279, 520
FaeI CATG 6 cut(s) 399, 418, 467, 748, 776, 879
FaqI GGGAC 1 cut(s) 921
FatI CATG 6 cut(s) 395, 414, 463, 744, 772, 875
FauI CCCGC 1 cut(s) 16
FbaI TGATCA 3 cut(s) 9, 724, 841
Fnu4HI GCNGC 1 cut(s) 222
FriOI GRGCYC 2 cut(s) 744, 1006
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 2 cut(s) 425, 497
GluI GCNGC 1 cut(s) 222
GsuI CTGGAG 2 cut(s) 39, 93
HapII CCGG 1 cut(s) 872
Hin1I GRCGYC 1 cut(s) 543
Hin1II CATG 6 cut(s) 399, 418, 467, 748, 776, 879
HindIII AAGCTT 1 cut(s) 472
HinfI GANTC 4 cut(s) 654, 909, 933, 938
HpaII CCGG 1 cut(s) 872
HphI GGTGA 1 cut(s) 42
Hpy188I TCNGA 8 cut(s) 9, 89, 178, 218, 305, 846, 952, 968
Hpy188III TCNNGA 7 cut(s) 13, 56, 561, 611, 901, 942, 997
Hpy99I CGWCG 1 cut(s) 548
HpyAV CCTTC 5 cut(s) 272, 743, 758, 770, 898
HpyCH4IV ACGT 3 cut(s) 123, 543, 754
HpyCH4V TGCA 3 cut(s) 309, 539, 578
HpyF10VI GCNNNNNNNGC 1 cut(s) 545
HpyF3I CTNAG 3 cut(s) 386, 549, 990
HpySE526I ACGT 3 cut(s) 123, 543, 754
Hsp92I GRCGYC 1 cut(s) 543
Hsp92II CATG 6 cut(s) 399, 418, 467, 748, 776, 879
Ksp22I TGATCA 3 cut(s) 9, 724, 841
Kzo9I GATC 9 cut(s) 4, 9, 15, 173, 213, 361, 724, 841, 883
LmnI GCTCC 6 cut(s) 90, 218, 739, 799, 874, 1009
LpnPI CCDG 9 cut(s) 16, 43, 69, 123, 489, 564, 588, 678, 885
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 3 cut(s) 296, 318, 658
MaeI CTAG 2 cut(s) 425, 497
MaeII ACGT 3 cut(s) 123, 543, 754
MaeIII GTNAC 2 cut(s) 419, 459
MalI GATC 9 cut(s) 6, 11, 17, 175, 215, 363, 726, 843, 885
MboI GATC 9 cut(s) 4, 9, 15, 173, 213, 361, 724, 841, 883
MflI RGATCY 2 cut(s) 4, 15
MhlI GDGCHC 3 cut(s) 744, 871, 1006
MluCI AATT 7 cut(s) 141, 205, 592, 606, 627, 817, 1014
MlyI GAGTC 2 cut(s) 903, 942
MmeI TCCRAC 4 cut(s) 19, 112, 310, 696
MnlI CCTC 5 cut(s) 35, 63, 117, 275, 985
Mph1103I ATGCAT 1 cut(s) 311
MseI TTAA 3 cut(s) 102, 228, 732
MslI CAYNNNNRTG 1 cut(s) 387
MspA1I CMGCKG 1 cut(s) 1023
MspCI CTTAAG 1 cut(s) 731
MspI CCGG 1 cut(s) 872
MspR9I CCNGG 1 cut(s) 31
MvaI CCWGG 1 cut(s) 31
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 1 cut(s) 545
NdeII GATC 9 cut(s) 4, 9, 15, 173, 213, 361, 724, 841, 883
NlaIII CATG 6 cut(s) 399, 418, 467, 748, 776, 879
NlaIV GGNNCC 4 cut(s) 28, 86, 134, 707
NsiI ATGCAT 1 cut(s) 311
NspV TTCGAA 1 cut(s) 762
PaeR7I CTCGAG 1 cut(s) 911
PfeI GAWTC 2 cut(s) 654, 938
PfoI TCCNGGA 1 cut(s) 29
PkrI GCNGC 1 cut(s) 223
PleI GAGTC 2 cut(s) 903, 941
PpsI GAGTC 2 cut(s) 903, 941
PpuMI RGGWCCY 1 cut(s) 581
Psp124BI GAGCTC 2 cut(s) 744, 1006
Psp5II RGGWCCY 1 cut(s) 581
Psp6I CCWGG 1 cut(s) 29
PspEI GGTNACC 1 cut(s) 419
PspGI CCWGG 1 cut(s) 29
PspN4I GGNNCC 4 cut(s) 28, 86, 134, 707
PspPI GGNCC 1 cut(s) 581
PspPPI RGGWCCY 1 cut(s) 581
PspXI VCTCGAGB 1 cut(s) 911
PstI CTGCAG 1 cut(s) 580
PstNI CAGNNNCTG 2 cut(s) 657, 989
PsuI RGATCY 2 cut(s) 4, 15
PvuII CAGCTG 1 cut(s) 1023
RsaI GTAC 2 cut(s) 62, 147
RsaNI GTAC 2 cut(s) 61, 146
RseI CAYNNNNRTG 1 cut(s) 387
SacI GAGCTC 2 cut(s) 744, 1006
SaqAI TTAA 3 cut(s) 102, 228, 732
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 9 cut(s) 4, 9, 15, 173, 213, 361, 724, 841, 883
Sau96I GGNCC 1 cut(s) 581
SbfI CCTGCAGG 1 cut(s) 580
ScaI AGTACT 1 cut(s) 62
SchI GAGTC 2 cut(s) 903, 942
ScrFI CCNGG 1 cut(s) 31
SdaI CCTGCAGG 1 cut(s) 580
SduI GDGCHC 3 cut(s) 744, 871, 1006
SfaNI GCATC 3 cut(s) 296, 318, 658
SfcI CTRYAG 2 cut(s) 576, 649
Sfr274I CTCGAG 1 cut(s) 911
SfuI TTCGAA 1 cut(s) 762
SinI GGWCC 1 cut(s) 581
SlaI CTCGAG 1 cut(s) 911
SmiMI CAYNNNNRTG 1 cut(s) 387
SmlI CTYRAG 3 cut(s) 731, 911, 997
SmoI CTYRAG 3 cut(s) 731, 911, 997
Sse8387I CCTGCAGG 1 cut(s) 580
Sse9I AATT 7 cut(s) 141, 205, 592, 606, 627, 817, 1014
SsiI CCGC 2 cut(s) 23, 184
SspI AATATT 3 cut(s) 100, 336, 809
SspMI CTAG 2 cut(s) 425, 497
SstI GAGCTC 2 cut(s) 744, 1006
StyD4I CCNGG 1 cut(s) 29
StyI CCWWGG 2 cut(s) 127, 424
TaiI ACGT 3 cut(s) 126, 546, 757
TaqI TCGA 5 cut(s) 562, 762, 886, 912, 936
TasI AATT 7 cut(s) 141, 205, 592, 606, 627, 817, 1014
TatI WGTACW 1 cut(s) 60
TfiI GAWTC 2 cut(s) 654, 938
Tru1I TTAA 3 cut(s) 102, 228, 732
Tru9I TTAA 3 cut(s) 102, 228, 732
TscAI CASTG 3 cut(s) 156, 394, 453
TseI GCWGC 1 cut(s) 221
TspDTI ATGAA 4 cut(s) 306, 480, 789, 942
TspRI CASTG 3 cut(s) 156, 394, 453
Vha464I CTTAAG 1 cut(s) 731
VpaK11BI GGWCC 1 cut(s) 581
XapI RAATTY 4 cut(s) 205, 606, 817, 1014
XcmI CCANNNNNNNNNTGG 1 cut(s) 500
XhoI CTCGAG 1 cut(s) 911
XmaJI CCTAGG 1 cut(s) 424
XspI CTAG 2 cut(s) 425, 497
ZraI GACGTC 1 cut(s) 544
ZrmI AGTACT 1 cut(s) 62
Zsp2I ATGCAT 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.