MD06G1238600.v1.1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0021132
Physical Location & Seq
Forward (+)
36933134 .. 36934635
1502 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1238600.v1.1.491

Sequence Viewer

Length: 897 bp
ATGAAGGGATTAAGACCAGGATGGGCAGTGAAGGCGATCCTTGTCGTGATATTCACATCTATGTTCTTCCGCTGCGTCTCTGCTGGCCCTGCAGCTGCTGCAACCAACACCAACCACTCTGTTGGTGGAGCTTCCGGTTGGGATCTCTCCTCCAACCTCCAAGCATGGGCTGCTCGCGCCACTTTCCGTGCGGGCGACTCTCTTGTTTTCAGGTACACGCCGGTGCACGATGTGCTGGAAGTGGGGAACATGGACTACGATTTGTGCCACACAATAGACCCAATGGAGACGCACAATGATGGGGAGACGGTTATTCCATTGAGGCAAACCGGAGACAGGTACTTCATATGTGGGAGGCTGGACCACTGTGCCATAGGCCTCAAGCTCCATGTTCTTGTCCTGCCTGCTCTGCAGATGAGTCCCAATGTTAATGCAACCTCTCCCAGCAGCCCCTTGATCACTAGTCCTTCATCAAATACTACTAGTTCAATTTCCAACAACAGCAGCAGACATGGTCCAGATGGTCAAGCAGTGGGAAATGATCATGTGCTGCCTTCTCTGCCGCCATCTACTTCCAATTACTCGATTAATTCTACACAAGGTTCACCTCCTGATCATGCTACAGGCAATAGTACTACATCTGATGGGCACTTAACATGGGGCAGCACCTGGATCCAGCTATTGGTTACAGTAGTTGCAGCACTGATCATGCAGCTCATGTTTTCCTCTTCTTCGATTCCTTGGTGGAGCGCCACCTCCATAGCTGTGTGTGTTTTCTTCACTCGTGCTGCCCTGTTTCTTCATGTCACTGTTGTTACTGCCGAGTTACTTGTGATCATTCATGCTGTCGTATTTCTTTTCATCATTGGAACCATTGTTGGGGTTCTTCTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

299

Amino Acids

31.79

Weight (kDa)

6.32

Isoelectric Point (pI)

30.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 49 - 126 2.9e-22 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021132)

Species Orthologous Gene IDs
malus_domestica MD06G1238600.v1.1 MD09G1277800.v1.1
prunus_persica Prupe.5G242500_v2.0.a1
pyrus_communis pycom06g21410 pycom09g18720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 682
AccII CGCG 1 cut(s) 177
AciI CCGC 3 cut(s) 70, 191, 563
AclWI GGATC 4 cut(s) 31, 150, 667, 680
AdeI CACNNNGTG 1 cut(s) 232
AfaI GTAC 3 cut(s) 215, 341, 634
AfiI CCNNNNNNNGG 4 cut(s) 166, 336, 682, 879
AgsI TTSAA 1 cut(s) 489
AhlI ACTAGT 2 cut(s) 461, 482
AjnI CCWGG 2 cut(s) 16, 668
AleI CACNNNNGTG 1 cut(s) 221
AluBI AGCT 6 cut(s) 95, 131, 385, 679, 715, 764
AluI AGCT 6 cut(s) 95, 131, 385, 679, 715, 764
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 4 cut(s) 82, 281, 299, 327
Alw44I GTGCAC 1 cut(s) 224
AlwI GGATC 4 cut(s) 31, 150, 667, 680
AlwNI CAGNNNCTG 2 cut(s) 98, 669
AoxI GGCC 2 cut(s) 85, 376
ApaLI GTGCAC 1 cut(s) 224
AseI ATTAAT 1 cut(s) 588
AspLEI GCGC 2 cut(s) 179, 752
AspS9I GGNCC 3 cut(s) 86, 361, 515
AsuHPI GGTGA 1 cut(s) 597
AvaII GGWCC 2 cut(s) 361, 515
BaeGI GKGCMC 2 cut(s) 228, 651
BamHI GGATCC 1 cut(s) 672
BauI CACGAG 1 cut(s) 783
Bbv12I GWGCWC 1 cut(s) 228
BccI CCATC 5 cut(s) 15, 293, 515, 574, 638
BciT130I CCWGG 2 cut(s) 18, 670
BclI TGATCA 5 cut(s) 456, 541, 613, 705, 834
BcoDI GTCTC 4 cut(s) 82, 281, 299, 327
BcuI ACTAGT 2 cut(s) 461, 482
BfaI CTAG 2 cut(s) 462, 483
BfmI CTRYAG 3 cut(s) 90, 410, 621
BfoI RGCGCY 1 cut(s) 753
BmcAI AGTACT 1 cut(s) 634
Bme1390I CCNGG 2 cut(s) 18, 670
Bme18I GGWCC 2 cut(s) 361, 515
BmgT120I GGNCC 3 cut(s) 86, 361, 515
BmiI GGNNCC 2 cut(s) 674, 871
BmrFI CCNGG 2 cut(s) 18, 670
BpuEI CTTGAG 1 cut(s) 365
BsaJI CCNNGG 1 cut(s) 740
BsaWI WCCGGW 2 cut(s) 134, 329
Bsc4I CCNNNNNNNGG 4 cut(s) 166, 336, 682, 879
Bse118I RCCGGY 1 cut(s) 220
BseBI CCWGG 2 cut(s) 18, 670
BseDI CCNNGG 1 cut(s) 740
BseGI GGATG 1 cut(s) 26
BseLI CCNNNNNNNGG 4 cut(s) 166, 336, 682, 879
BseRI GAGGAG 1 cut(s) 139
BseSI GKGCMC 2 cut(s) 228, 651
BseYI CCCAGC 1 cut(s) 443
Bsh1236I CGCG 1 cut(s) 177
BshFI GGCC 2 cut(s) 87, 378
BsiHKAI GWGCWC 1 cut(s) 228
BsiSI CCGG 3 cut(s) 135, 221, 330
BslFI GGGAC 1 cut(s) 405
BslI CCNNNNNNNGG 4 cut(s) 166, 336, 682, 879
BsmAI GTCTC 4 cut(s) 82, 281, 299, 327
BsmBI CGTCTC 3 cut(s) 82, 281, 299
BsmFI GGGAC 1 cut(s) 405
BsnI GGCC 2 cut(s) 87, 378
Bsp1286I GDGCHC 2 cut(s) 228, 651
Bsp143I GATC 8 cut(s) 36, 142, 456, 541, 613, 672, 705, 834
BspACI CCGC 3 cut(s) 70, 191, 563
BspANI GGCC 2 cut(s) 87, 378
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 2 cut(s) 674, 871
BspMAI CTGCAG 2 cut(s) 94, 414
BspPI GGATC 4 cut(s) 31, 150, 667, 680
BsrFI RCCGGY 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 740
BssMI GATC 8 cut(s) 36, 142, 456, 541, 613, 672, 705, 834
BssSI CACGAG 1 cut(s) 783
BssT1I CCWWGG 1 cut(s) 740
Bst2BI CACGAG 1 cut(s) 783
Bst2UI CCWGG 2 cut(s) 18, 670
Bst4CI ACNGT 4 cut(s) 310, 368, 691, 811
Bst6I CTCTTC 1 cut(s) 733
BstAPI GCANNNNNTGC 3 cut(s) 98, 170, 232
BstC8I GCNNGC 4 cut(s) 85, 175, 193, 405
BstF5I GGATG 1 cut(s) 26
BstFNI CGCG 1 cut(s) 177
BstH2I RGCGCY 1 cut(s) 753
BstHHI GCGC 2 cut(s) 179, 752
BstKTI GATC 8 cut(s) 39, 145, 459, 544, 616, 675, 708, 837
BstMAI GTCTC 4 cut(s) 82, 281, 299, 327
BstMBI GATC 8 cut(s) 36, 142, 456, 541, 613, 672, 705, 834
BstMWI GCNNNNNNNGC 8 cut(s) 32, 89, 98, 170, 176, 232, 409, 559
BstNI CCWGG 2 cut(s) 18, 670
BstSCI CCNGG 2 cut(s) 16, 668
BstSFI CTRYAG 3 cut(s) 90, 410, 621
BstSLI GKGCMC 2 cut(s) 228, 651
BstUI CGCG 1 cut(s) 177
BstX2I RGATCY 2 cut(s) 142, 672
BstXI CCANNNNNNTGG 1 cut(s) 122
BstYI RGATCY 2 cut(s) 142, 672
BsuRI GGCC 2 cut(s) 87, 378
BtsCI GGATG 1 cut(s) 26
BtsI GCAGTG 2 cut(s) 33, 537
BtsIMutI CAGTG 5 cut(s) 33, 364, 537, 701, 807
Cac8I GCNNGC 4 cut(s) 85, 175, 193, 405
CaiI CAGNNNCTG 2 cut(s) 98, 669
CfoI GCGC 2 cut(s) 179, 752
Cfr10I RCCGGY 1 cut(s) 220
Cfr13I GGNCC 3 cut(s) 86, 361, 515
CseI GACGC 2 cut(s) 64, 298
Csp6I GTAC 3 cut(s) 214, 340, 633
CviQI GTAC 3 cut(s) 214, 340, 633
DpnI GATC 8 cut(s) 38, 144, 458, 543, 615, 674, 707, 836
DpnII GATC 8 cut(s) 36, 142, 456, 541, 613, 672, 705, 834
DraIII CACNNNGTG 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 733
EarI CTCTTC 1 cut(s) 733
Eco130I CCWWGG 1 cut(s) 740
Eco147I AGGCCT 1 cut(s) 378
Eco47I GGWCC 2 cut(s) 361, 515
EcoRII CCWGG 2 cut(s) 16, 668
EcoT14I CCWWGG 1 cut(s) 740
ErhI CCWWGG 1 cut(s) 740
Esp3I CGTCTC 3 cut(s) 82, 281, 299
FaqI GGGAC 1 cut(s) 405
FauI CCCGC 1 cut(s) 184
FauNDI CATATG 1 cut(s) 347
FbaI TGATCA 5 cut(s) 456, 541, 613, 705, 834
FokI GGATG 1 cut(s) 33
FspBI CTAG 2 cut(s) 462, 483
GlaI GCGC 2 cut(s) 178, 751
GsaI CCCAGC 1 cut(s) 447
HaeII RGCGCY 1 cut(s) 753
HaeIII GGCC 2 cut(s) 87, 378
HapII CCGG 3 cut(s) 135, 221, 330
HgaI GACGC 2 cut(s) 64, 298
HhaI GCGC 2 cut(s) 179, 752
Hin6I GCGC 2 cut(s) 177, 750
HinP1I GCGC 2 cut(s) 177, 750
HinfI GANTC 3 cut(s) 197, 418, 736
HpaII CCGG 3 cut(s) 135, 221, 330
HphI GGTGA 1 cut(s) 597
Hpy166II GTNNAC 3 cut(s) 216, 226, 605
Hpy188I TCNGA 1 cut(s) 643
Hpy188III TCNNGA 3 cut(s) 46, 518, 611
Hpy8I GTNNAC 3 cut(s) 216, 226, 605
HpyAV CCTTC 3 cut(s) 25, 477, 564
HpyCH4III ACNGT 4 cut(s) 310, 368, 691, 811
HpyCH4V TGCA 7 cut(s) 92, 101, 226, 412, 434, 698, 712
HpyF10VI GCNNNNNNNGC 8 cut(s) 32, 89, 98, 170, 176, 232, 409, 559
HspAI GCGC 2 cut(s) 177, 750
Ksp22I TGATCA 5 cut(s) 456, 541, 613, 705, 834
Kzo9I GATC 8 cut(s) 36, 142, 456, 541, 613, 672, 705, 834
LmnI GCTCC 3 cut(s) 128, 390, 747
MaeI CTAG 2 cut(s) 462, 483
MaeIII GTNAC 4 cut(s) 685, 805, 814, 825
MalI GATC 8 cut(s) 38, 144, 458, 543, 615, 674, 707, 836
MboI GATC 8 cut(s) 36, 142, 456, 541, 613, 672, 705, 834
MboII GAAGA 7 cut(s) 58, 720, 723, 769, 791, 878, 881
MflI RGATCY 2 cut(s) 142, 672
MhlI GDGCHC 2 cut(s) 228, 651
MluCI AATT 3 cut(s) 489, 577, 589
MlyI GAGTC 2 cut(s) 191, 427
MmeI TCCRAC 2 cut(s) 177, 519
MnlI CCTC 9 cut(s) 160, 167, 315, 348, 389, 448, 618, 736, 766
MseI TTAA 4 cut(s) 11, 429, 588, 653
MslI CAYNNNNRTG 4 cut(s) 59, 221, 297, 764
MspA1I CMGCKG 2 cut(s) 72, 95
MspI CCGG 3 cut(s) 135, 221, 330
MspR9I CCNGG 2 cut(s) 18, 670
MvaI CCWGG 2 cut(s) 18, 670
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 8 cut(s) 32, 89, 98, 170, 176, 232, 409, 559
NdeI CATATG 1 cut(s) 347
NdeII GATC 8 cut(s) 36, 142, 456, 541, 613, 672, 705, 834
NlaIV GGNNCC 2 cut(s) 674, 871
NmeAIII GCCGAG 1 cut(s) 847
NmuCI GTSAC 1 cut(s) 805
OliI CACNNNNGTG 1 cut(s) 221
PceI AGGCCT 1 cut(s) 378
PfeI GAWTC 1 cut(s) 736
PflFI GACNNNGTC 1 cut(s) 513
PflMI CCANNNNNTGG 1 cut(s) 682
PleI GAGTC 2 cut(s) 191, 426
PpsI GAGTC 2 cut(s) 191, 426
PshBI ATTAAT 1 cut(s) 588
Psp6I CCWGG 2 cut(s) 16, 668
PspFI CCCAGC 1 cut(s) 443
PspGI CCWGG 2 cut(s) 16, 668
PspN4I GGNNCC 2 cut(s) 674, 871
PspPI GGNCC 3 cut(s) 86, 361, 515
PsrI GAACNNNNNNTAC 2 cut(s) 239, 271
PstI CTGCAG 2 cut(s) 94, 414
PstNI CAGNNNCTG 2 cut(s) 98, 669
PsuI RGATCY 2 cut(s) 142, 672
PsyI GACNNNGTC 1 cut(s) 513
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 3 cut(s) 215, 341, 634
RsaNI GTAC 3 cut(s) 214, 340, 633
RseI CAYNNNNRTG 4 cut(s) 59, 221, 297, 764
SaqAI TTAA 4 cut(s) 11, 429, 588, 653
Sau3AI GATC 8 cut(s) 36, 142, 456, 541, 613, 672, 705, 834
Sau96I GGNCC 3 cut(s) 86, 361, 515
ScaI AGTACT 1 cut(s) 634
SchI GAGTC 2 cut(s) 191, 427
ScrFI CCNGG 2 cut(s) 18, 670
SduI GDGCHC 2 cut(s) 228, 651
SfcI CTRYAG 3 cut(s) 90, 410, 621
SgrAI CRCCGGYG 1 cut(s) 220
SinI GGWCC 2 cut(s) 361, 515
SmiMI CAYNNNNRTG 4 cut(s) 59, 221, 297, 764
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
SpeI ACTAGT 2 cut(s) 461, 482
Sse9I AATT 3 cut(s) 489, 577, 589
SseBI AGGCCT 1 cut(s) 378
SsiI CCGC 3 cut(s) 70, 191, 563
SspMI CTAG 2 cut(s) 462, 483
StuI AGGCCT 1 cut(s) 378
StyD4I CCNGG 2 cut(s) 16, 668
StyI CCWWGG 1 cut(s) 740
TaaI ACNGT 4 cut(s) 310, 368, 691, 811
TaqI TCGA 2 cut(s) 584, 734
TasI AATT 3 cut(s) 489, 577, 589
TatI WGTACW 1 cut(s) 632
TauI GCSGC 1 cut(s) 565
TfiI GAWTC 1 cut(s) 736
Tru1I TTAA 4 cut(s) 11, 429, 588, 653
Tru9I TTAA 4 cut(s) 11, 429, 588, 653
TscAI CASTG 5 cut(s) 33, 371, 537, 708, 814
TseFI GTSAC 1 cut(s) 805
Tsp45I GTSAC 1 cut(s) 805
TspDTI ATGAA 7 cut(s) 17, 334, 459, 791, 830, 850, 881
TspGWI ACGGA 1 cut(s) 176
TspRI CASTG 5 cut(s) 33, 371, 537, 708, 814
Tth111I GACNNNGTC 1 cut(s) 513
Van91I CCANNNNNTGG 1 cut(s) 682
VneI GTGCAC 1 cut(s) 224
VpaK11BI GGWCC 2 cut(s) 361, 515
VspI ATTAAT 1 cut(s) 588
XcmI CCANNNNNNNNNTGG 1 cut(s) 122
XspI CTAG 2 cut(s) 462, 483
ZrmI AGTACT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.