Prupe.5G242500_v2.0.a1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0021132
Physical Location & Seq
Forward (+)
18233009 .. 18235153
2145 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G242500.1

Sequence Viewer

Length: 684 bp
ATGAAGGGAGGAGTGAGAGCAGGATTGGCAGTGAAGGCGATCGTTGTGGTGATATTCACATCCATGTGGTTCCGTTGCGTCTCTGCTTTTGCTGCTGCGATCAACACCAACCACTCTGTTGGCGGAGCTTCGGGTTGGGATCTCTCCTCCAACCTCCAAGCATGGGCTACTCACGCCACTTTCCATGTCGGCGACTGTCTTGTGTTCAGGTACACACCGGTGCACGATGTGCTGGAAGTGAAGAATACAGACTACGATAGGTGTCACACAGTGGACCCAATGGAGACGCACGACGAAGGGGAGACAGTGATCCAGCTGAGGGAAGTAGGAAACAGGTACTTCATATGTGGGCGGCTGGGACATTGTGCTATGGGCCTCAAGCTCCATGTCCAAGTTTTCCCTGCACAGCTTATGACTAATAATGCAACCTCGCCCGCTGCTCCTCCTCCTACTACTTCTGATCATCATCATGATCATCCAAACGACAACAACAACAACAACAGCAGCCATGGGATGATGCTGCCTTCTCCGCCGCCTGCAGATTCTAATTACTCCAATAATAATGATGCGGTAGCAGCCAAGACTTCTTCTACTAGTACTACTGCTGGTACTGCTGCTGCTGCTGCTTTTTTAGTAGTTGTCTTCGTCACTTTGCATGCAGTTGCAGAGCACTCTGCATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

228

Amino Acids

24.22

Weight (kDa)

6.16

Isoelectric Point (pI)

22.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021132)

Species Orthologous Gene IDs
malus_domestica MD06G1238600.v1.1 MD09G1277800.v1.1
prunus_persica Prupe.5G242500_v2.0.a1
pyrus_communis pycom06g21410 pycom09g18720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 123, 352, 435, 530, 533, 569
AclWI GGATC 2 cut(s) 147, 304
AdeI CACNNNGTG 2 cut(s) 229, 271
AfaI GTAC 4 cut(s) 212, 338, 598, 610
AfiI CCNNNNNNNGG 2 cut(s) 163, 319
AgeI ACCGGT 1 cut(s) 217
AhlI ACTAGT 1 cut(s) 593
AleI CACNNNNGTG 1 cut(s) 218
AluBI AGCT 4 cut(s) 128, 316, 382, 409
AluI AGCT 4 cut(s) 128, 316, 382, 409
Alw21I GWGCWC 2 cut(s) 225, 672
Alw26I GTCTC 3 cut(s) 85, 278, 296
Alw44I GTGCAC 1 cut(s) 221
AlwI GGATC 2 cut(s) 147, 304
AoxI GGCC 1 cut(s) 373
ApaLI GTGCAC 1 cut(s) 221
AsiGI ACCGGT 1 cut(s) 217
AspS9I GGNCC 2 cut(s) 274, 373
AsuHPI GGTGA 1 cut(s) 61
AvaII GGWCC 1 cut(s) 274
BaeGI GKGCMC 1 cut(s) 225
BbsI GAAGAC 1 cut(s) 634
Bbv12I GWGCWC 2 cut(s) 225, 672
BbvCI CCTCAGC 1 cut(s) 317
BclI TGATCA 2 cut(s) 460, 472
BcoDI GTCTC 3 cut(s) 85, 278, 296
BcuI ACTAGT 1 cut(s) 593
BfaI CTAG 1 cut(s) 594
BfmI CTRYAG 1 cut(s) 537
BmcAI AGTACT 1 cut(s) 598
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 2 cut(s) 274, 373
BmiI GGNNCC 2 cut(s) 71, 276
BmsI GCATC 2 cut(s) 507, 556
BpiI GAAGAC 1 cut(s) 634
Bpu10I CCTNAGC 1 cut(s) 317
BpuEI CTTGAG 1 cut(s) 362
BsaBI GATNNNNATC 1 cut(s) 465
BsaJI CCNNGG 1 cut(s) 508
BsaWI WCCGGW 1 cut(s) 217
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 319
Bse118I RCCGGY 1 cut(s) 217
Bse8I GATNNNNATC 1 cut(s) 465
BseDI CCNNGG 1 cut(s) 508
BseGI GGATG 3 cut(s) 59, 475, 519
BseJI GATNNNNATC 1 cut(s) 465
BseLI CCNNNNNNNGG 2 cut(s) 163, 319
BseMII CTCAG 1 cut(s) 308
BseRI GAGGAG 4 cut(s) 24, 136, 432, 435
BseSI GKGCMC 1 cut(s) 225
BseYI CCCAGC 1 cut(s) 355
BsgI GTGCAG 1 cut(s) 387
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 1 cut(s) 375
BshTI ACCGGT 1 cut(s) 217
BsiEI CGRYCG 1 cut(s) 42
BsiHKAI GWGCWC 2 cut(s) 225, 672
BsiSI CCGG 1 cut(s) 218
BslFI GGGAC 1 cut(s) 372
BslI CCNNNNNNNGG 2 cut(s) 163, 319
BsmAI GTCTC 3 cut(s) 85, 278, 296
BsmBI CGTCTC 2 cut(s) 85, 278
BsmFI GGGAC 1 cut(s) 372
BsnI GGCC 1 cut(s) 375
Bsp1286I GDGCHC 2 cut(s) 225, 672
Bsp143I GATC 6 cut(s) 39, 99, 139, 309, 460, 472
Bsp19I CCATGG 1 cut(s) 508
BspACI CCGC 6 cut(s) 123, 352, 435, 530, 533, 569
BspANI GGCC 1 cut(s) 375
BspCNI CTCAG 1 cut(s) 309
BspHI TCATGA 1 cut(s) 469
BspLI GGNNCC 2 cut(s) 71, 276
BspMAI CTGCAG 1 cut(s) 541
BspPI GGATC 2 cut(s) 147, 304
BsrFI RCCGGY 1 cut(s) 217
BssAI RCCGGY 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 508
BssMI GATC 6 cut(s) 39, 99, 139, 309, 460, 472
BssT1I CCWWGG 1 cut(s) 508
Bst4CI ACNGT 3 cut(s) 197, 271, 307
BstAPI GCANNNNNTGC 1 cut(s) 229
BstC8I GCNNGC 3 cut(s) 435, 537, 657
BstDEI CTNAG 1 cut(s) 317
BstDSI CCRYGG 1 cut(s) 508
BstF5I GGATG 3 cut(s) 59, 475, 519
BstKTI GATC 6 cut(s) 42, 102, 142, 312, 463, 475
BstMAI GTCTC 3 cut(s) 85, 278, 296
BstMBI GATC 6 cut(s) 39, 99, 139, 309, 460, 472
BstMCI CGRYCG 1 cut(s) 42
BstNSI RCATGY 1 cut(s) 659
BstSFI CTRYAG 1 cut(s) 537
BstSLI GKGCMC 1 cut(s) 225
BstV2I GAAGAC 1 cut(s) 634
BstX2I RGATCY 1 cut(s) 139
BstXI CCANNNNNNTGG 1 cut(s) 119
BstYI RGATCY 1 cut(s) 139
BsuRI GGCC 1 cut(s) 375
BtgI CCRYGG 1 cut(s) 508
BtsCI GGATG 3 cut(s) 59, 475, 519
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 3 cut(s) 36, 276, 312
Cac8I GCNNGC 3 cut(s) 435, 537, 657
CciI TCATGA 1 cut(s) 469
Cfr10I RCCGGY 1 cut(s) 217
Cfr13I GGNCC 2 cut(s) 274, 373
CseI GACGC 2 cut(s) 67, 295
Csp6I GTAC 4 cut(s) 211, 337, 597, 609
CspAI ACCGGT 1 cut(s) 217
CviAII CATG 7 cut(s) 64, 162, 185, 386, 470, 509, 656
CviJI RGCY 9 cut(s) 128, 167, 316, 355, 375, 382, 409, 507, 578
CviKI_1 RGCY 9 cut(s) 128, 167, 316, 355, 375, 382, 409, 507, 578
CviQI GTAC 4 cut(s) 211, 337, 597, 609
DdeI CTNAG 1 cut(s) 317
DpnI GATC 6 cut(s) 41, 101, 141, 311, 462, 474
DpnII GATC 6 cut(s) 39, 99, 139, 309, 460, 472
DraIII CACNNNGTG 2 cut(s) 229, 271
EciI GGCGGA 2 cut(s) 138, 519
Eco130I CCWWGG 1 cut(s) 508
Eco47I GGWCC 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 508
ErhI CCWWGG 1 cut(s) 508
Esp3I CGTCTC 2 cut(s) 85, 278
FaeI CATG 7 cut(s) 67, 165, 188, 389, 473, 512, 659
FaqI GGGAC 1 cut(s) 372
FatI CATG 7 cut(s) 63, 161, 184, 385, 469, 508, 655
FauI CCCGC 1 cut(s) 442
FauNDI CATATG 1 cut(s) 344
FbaI TGATCA 2 cut(s) 460, 472
FokI GGATG 3 cut(s) 46, 462, 526
FspBI CTAG 1 cut(s) 594
GsaI CCCAGC 1 cut(s) 359
HaeIII GGCC 1 cut(s) 375
HapII CCGG 1 cut(s) 218
HgaI GACGC 2 cut(s) 67, 295
Hin1II CATG 7 cut(s) 67, 165, 188, 389, 473, 512, 659
HinfI GANTC 1 cut(s) 542
HpaII CCGG 1 cut(s) 218
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 3 cut(s) 213, 223, 274
Hpy188I TCNGA 1 cut(s) 460
Hpy188III TCNNGA 1 cut(s) 470
Hpy8I GTNNAC 3 cut(s) 213, 223, 274
Hpy99I CGWCG 1 cut(s) 296
HpyAV CCTTC 3 cut(s) 28, 290, 534
HpyCH4III ACNGT 3 cut(s) 197, 271, 307
HpyCH4V TGCA 8 cut(s) 223, 404, 425, 539, 655, 659, 665, 677
HpyF3I CTNAG 1 cut(s) 317
Hsp92II CATG 7 cut(s) 67, 165, 188, 389, 473, 512, 659
Ksp22I TGATCA 2 cut(s) 460, 472
Kzo9I GATC 6 cut(s) 39, 99, 139, 309, 460, 472
LmnI GCTCC 3 cut(s) 125, 387, 445
LweI GCATC 2 cut(s) 507, 556
MaeI CTAG 1 cut(s) 594
MaeIII GTNAC 2 cut(s) 263, 646
MalI GATC 6 cut(s) 41, 101, 141, 311, 462, 474
MboI GATC 6 cut(s) 39, 99, 139, 309, 460, 472
MboII GAAGA 3 cut(s) 253, 579, 634
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 2 cut(s) 225, 672
MluCI AATT 1 cut(s) 547
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 7 cut(s) 157, 164, 312, 386, 439, 453, 456
MslI CAYNNNNRTG 4 cut(s) 62, 64, 218, 468
MspA1I CMGCKG 2 cut(s) 316, 437
MspI CCGG 1 cut(s) 218
NcoI CCATGG 1 cut(s) 508
NdeI CATATG 1 cut(s) 344
NdeII GATC 6 cut(s) 39, 99, 139, 309, 460, 472
NlaIII CATG 7 cut(s) 67, 165, 188, 389, 473, 512, 659
NlaIV GGNNCC 2 cut(s) 71, 276
NmuCI GTSAC 2 cut(s) 263, 646
NspI RCATGY 1 cut(s) 659
OliI CACNNNNGTG 1 cut(s) 218
PaeI GCATGC 1 cut(s) 659
PagI TCATGA 1 cut(s) 469
PfeI GAWTC 1 cut(s) 542
PinAI ACCGGT 1 cut(s) 217
Ple19I CGATCG 1 cut(s) 42
PspFI CCCAGC 1 cut(s) 355
PspN4I GGNNCC 2 cut(s) 71, 276
PspPI GGNCC 2 cut(s) 274, 373
PstI CTGCAG 1 cut(s) 541
PsuI RGATCY 1 cut(s) 139
PvuI CGATCG 1 cut(s) 42
PvuII CAGCTG 1 cut(s) 316
RsaI GTAC 4 cut(s) 212, 338, 598, 610
RsaNI GTAC 4 cut(s) 211, 337, 597, 609
RseI CAYNNNNRTG 4 cut(s) 62, 64, 218, 468
Sau3AI GATC 6 cut(s) 39, 99, 139, 309, 460, 472
Sau96I GGNCC 2 cut(s) 274, 373
ScaI AGTACT 1 cut(s) 598
SduI GDGCHC 2 cut(s) 225, 672
SetI ASST 9 cut(s) 130, 156, 212, 263, 318, 338, 384, 411, 431
SfaNI GCATC 2 cut(s) 507, 556
SfcI CTRYAG 1 cut(s) 537
SgrAI CRCCGGYG 1 cut(s) 217
SinI GGWCC 1 cut(s) 274
SmiMI CAYNNNNRTG 4 cut(s) 62, 64, 218, 468
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
SpeI ACTAGT 1 cut(s) 593
SphI GCATGC 1 cut(s) 659
Sse9I AATT 1 cut(s) 547
SsiI CCGC 6 cut(s) 123, 352, 435, 530, 533, 569
SspMI CTAG 1 cut(s) 594
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 3 cut(s) 197, 271, 307
TasI AATT 1 cut(s) 547
TatI WGTACW 1 cut(s) 596
TauI GCSGC 2 cut(s) 355, 535
TfiI GAWTC 1 cut(s) 542
TscAI CASTG 3 cut(s) 36, 276, 312
TseFI GTSAC 2 cut(s) 263, 646
Tsp45I GTSAC 2 cut(s) 263, 646
TspDTI ATGAA 2 cut(s) 17, 331
TspGWI ACGGA 1 cut(s) 62
TspRI CASTG 3 cut(s) 36, 276, 312
VneI GTGCAC 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 274
XceI RCATGY 1 cut(s) 659
XspI CTAG 1 cut(s) 594
ZrmI AGTACT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.