Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0022383

Physical Location & Seq

Genomic Coordinates Forward (+)

4262766 .. 4264865

Gene Structure 2100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1049500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGCTGCTAGTCGTGTCTTACTTCAGGCAAGTAAATGTCTTTCTAGTGATCAAAGCGATCGGCCAGAGCGAGCTAGAGGGTACGTGGATCCTCATCTGTGAAGTACTCAGTCTGCAGTGCATCATGGATGTGTCTGTAGATGAAAATCATAGCATTAGCTTTCTGAGCTTCGTCGATGGGTGCATTGTCGATTGGTTCCTCGATAGTAGCTCTAAGACTCTTTGCAGTAAGATGGAGCACATCGTGAACCCACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0016020 GO:0016021 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

86

Amino Acids

9.6

Weight (kDa)

4.45

Isoelectric Point (pI)

27.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022383)

Species	Orthologous Gene IDs
malus_domestica	MD01G1047500.v1.1 MD07G1049500.v1.1 MD12G1083500.v1.1
pyrus_communis	pycom13g23540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	82, 95
AcoI	YGGCCR	1 cut(s)	61
AcuI	CTGAAG	1 cut(s)	7
AdeI	CACNNNGTG	1 cut(s)	244
AfaI	GTAC	2 cut(s)	82, 105
AluBI	AGCT	4 cut(s)	73, 159, 168, 210
AluI	AGCT	4 cut(s)	73, 159, 168, 210
Alw21I	GWGCWC	1 cut(s)	240
AlwI	GGATC	2 cut(s)	82, 95
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	4
BamHI	GGATCC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	240
BccI	CCATC	2 cut(s)	170, 226
BclI	TGATCA	1 cut(s)	48
BfaI	CTAG	3 cut(s)	8, 44, 74
BfmI	CTRYAG	2 cut(s)	113, 135
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
BmcAI	AGTACT	1 cut(s)	105
BmiI	GGNNCC	2 cut(s)	89, 197
BmsI	GCATC	1 cut(s)	129
BsaAI	YACGTR	1 cut(s)	84
BsaBI	GATNNNNATC	2 cut(s)	92, 144
Bse8I	GATNNNNATC	2 cut(s)	92, 144
BseGI	GGATG	1 cut(s)	133
BseJI	GATNNNNATC	2 cut(s)	92, 144
BseMII	CTCAG	2 cut(s)	121, 155
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	63
BsiEI	CGRYCG	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	240
BsnI	GGCC	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	3 cut(s)	48, 57, 87
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	2 cut(s)	120, 156
BspLI	GGNNCC	2 cut(s)	89, 197
BspMAI	CTGCAG	1 cut(s)	117
BspPI	GGATC	2 cut(s)	82, 95
BssMI	GATC	3 cut(s)	48, 57, 87
BstBAI	YACGTR	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	71
BstDEI	CTNAG	3 cut(s)	107, 164, 213
BstF5I	GGATG	1 cut(s)	133
BstKTI	GATC	3 cut(s)	51, 60, 90
BstMBI	GATC	3 cut(s)	48, 57, 87
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	1 cut(s)	165
BstSFI	CTRYAG	2 cut(s)	113, 135
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	133
BtsI	GCAGTG	1 cut(s)	122
BtsIMutI	CAGTG	1 cut(s)	122
Cac8I	GCNNGC	1 cut(s)	71
Csp6I	GTAC	2 cut(s)	81, 104
CviAII	CATG	1 cut(s)	124
CviJI	RGCY	5 cut(s)	63, 73, 159, 168, 210
CviKI_1	RGCY	5 cut(s)	63, 73, 159, 168, 210
CviQI	GTAC	2 cut(s)	81, 104
DdeI	CTNAG	3 cut(s)	107, 164, 213
DpnI	GATC	3 cut(s)	50, 59, 89
DpnII	GATC	3 cut(s)	48, 57, 87
DraIII	CACNNNGTG	1 cut(s)	244
EaeI	YGGCCR	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	7
FaeI	CATG	1 cut(s)	127
FaiI	YATR	2 cut(s)	125, 150
FatI	CATG	1 cut(s)	123
FbaI	TGATCA	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	3 cut(s)	8, 44, 74
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	1 cut(s)	63
Hin1II	CATG	1 cut(s)	127
HinfI	GANTC	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	1 cut(s)	244
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	1 cut(s)	176
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	4 cut(s)	115, 120, 183, 225
HpyF10VI	GCNNNNNNNGC	1 cut(s)	165
HpyF3I	CTNAG	3 cut(s)	107, 164, 213
HpySE526I	ACGT	1 cut(s)	83
Hsp92II	CATG	1 cut(s)	127
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	3 cut(s)	48, 57, 87
LmnI	GCTCC	1 cut(s)	235
LpnPI	CCDG	2 cut(s)	10, 77
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	3 cut(s)	8, 44, 74
MaeII	ACGT	1 cut(s)	83
MalI	GATC	3 cut(s)	50, 59, 89
MboI	GATC	3 cut(s)	48, 57, 87
MflI	RGATCY	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	240
MlyI	GAGTC	1 cut(s)	211
MnlI	CCTC	3 cut(s)	70, 101, 209
MslI	CAYNNNNRTG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	165
NdeII	GATC	3 cut(s)	48, 57, 87
NlaIII	CATG	1 cut(s)	127
NlaIV	GGNNCC	2 cut(s)	89, 197
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PkrI	GCNGC	1 cut(s)	6
Ple19I	CGATCG	1 cut(s)	60
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Ppu21I	YACGTR	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	89, 197
PstI	CTGCAG	1 cut(s)	117
PsuI	RGATCY	1 cut(s)	87
PvuI	CGATCG	1 cut(s)	60
RsaI	GTAC	2 cut(s)	82, 105
RsaNI	GTAC	2 cut(s)	81, 104
RseI	CAYNNNNRTG	1 cut(s)	128
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	3 cut(s)	48, 57, 87
ScaI	AGTACT	1 cut(s)	105
SchI	GAGTC	1 cut(s)	211
SduI	GDGCHC	1 cut(s)	240
SetI	ASST	5 cut(s)	75, 86, 161, 170, 212
SfaNI	GCATC	1 cut(s)	129
SfcI	CTRYAG	2 cut(s)	113, 135
SmiMI	CAYNNNNRTG	1 cut(s)	128
SspMI	CTAG	3 cut(s)	8, 44, 74
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	3 cut(s)	174, 189, 201
TatI	WGTACW	1 cut(s)	103
TscAI	CASTG	1 cut(s)	122
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	122
XspI	CTAG	3 cut(s)	8, 44, 74
ZrmI	AGTACT	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.