MD12G1083500.v1.1

Fantastic Four meristem regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0022383
Physical Location & Seq
Reverse (-)
10120365 .. 10122489
2125 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1083500.v1.1.491

Sequence Viewer

Length: 285 bp
ATGCTGCCAGTCGTGTCTTGCTTCAGGCAAGTATATGTCTTTCTGGTGATCGAAACGGTCGACCAAAGCAAGTCAGAAGGTGCGTGGGTCCTCCTCAGCGAGATACTTAGTCTGCAGTGCATCATGAATGTGTCTTCGGATGAAGATCATTGTAGTAGCCTTCTGAGCTTCGTCAACAGGTTTGTCGGTGATAGGTGTCTCGATGGTGGATCTAATACCCTTTGCAGTGAGATGGAGCTTCACATCTTGAACCCACTTCAGATAGTTTCTTCCAGAGACTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

95

Amino Acids

10.52

Weight (kDa)

4.41

Isoelectric Point (pI)

55.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022383)

Species Orthologous Gene IDs
malus_domestica MD01G1047500.v1.1 MD07G1049500.v1.1 MD12G1083500.v1.1
pyrus_communis pycom13g23540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 60
AclWI GGATC 1 cut(s) 217
AcuI CTGAAG 2 cut(s) 7, 242
AgsI TTSAA 1 cut(s) 250
AluBI AGCT 2 cut(s) 168, 238
AluI AGCT 2 cut(s) 168, 238
Alw26I GTCTC 2 cut(s) 203, 270
AlwI GGATC 1 cut(s) 217
ApeKI GCWGC 1 cut(s) 4
AspS9I GGNCC 1 cut(s) 88
AsuHPI GGTGA 2 cut(s) 58, 200
AvaII GGWCC 1 cut(s) 88
BbsI GAAGAC 1 cut(s) 126
BbvCI CCTCAGC 1 cut(s) 95
BccI CCATC 2 cut(s) 197, 226
BcoDI GTCTC 2 cut(s) 203, 270
BfaI CTAG 1 cut(s) 283
BfmI CTRYAG 1 cut(s) 113
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme18I GGWCC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 88
BmiI GGNNCC 1 cut(s) 89
BmsI GCATC 1 cut(s) 129
BpiI GAAGAC 1 cut(s) 126
Bpu10I CCTNAGC 1 cut(s) 95
BsaBI GATNNNNATC 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 8
Bse8I GATNNNNATC 1 cut(s) 144
BseGI GGATG 1 cut(s) 145
BseJI GATNNNNATC 1 cut(s) 144
BseMII CTCAG 2 cut(s) 109, 155
BseNI ACTGG 1 cut(s) 8
BseRI GAGGAG 1 cut(s) 83
Bsh1285I CGRYCG 1 cut(s) 60
BsiEI CGRYCG 1 cut(s) 60
BsmAI GTCTC 2 cut(s) 203, 270
Bsp143I GATC 3 cut(s) 48, 145, 209
BspCNI CTCAG 2 cut(s) 108, 156
BspHI TCATGA 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 89
BspMAI CTGCAG 1 cut(s) 117
BspPI GGATC 1 cut(s) 217
BsrI ACTGG 1 cut(s) 8
BssMI GATC 3 cut(s) 48, 145, 209
Bst4CI ACNGT 1 cut(s) 58
BstDEI CTNAG 3 cut(s) 95, 107, 164
BstF5I GGATG 1 cut(s) 145
BstKTI GATC 3 cut(s) 51, 148, 212
BstMAI GTCTC 2 cut(s) 203, 270
BstMBI GATC 3 cut(s) 48, 145, 209
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 1 cut(s) 165
BstSFI CTRYAG 1 cut(s) 113
BstV2I GAAGAC 1 cut(s) 126
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
BtsCI GGATG 1 cut(s) 145
BtsI GCAGTG 2 cut(s) 122, 232
BtsIMutI CAGTG 2 cut(s) 122, 232
CciI TCATGA 1 cut(s) 123
Cfr13I GGNCC 1 cut(s) 88
CviAII CATG 1 cut(s) 124
CviJI RGCY 3 cut(s) 159, 168, 238
CviKI_1 RGCY 3 cut(s) 159, 168, 238
DdeI CTNAG 3 cut(s) 95, 107, 164
DpnI GATC 3 cut(s) 50, 147, 211
DpnII GATC 3 cut(s) 48, 145, 209
Eco47I GGWCC 1 cut(s) 88
Eco57I CTGAAG 2 cut(s) 7, 242
EcoO109I RGGNCCY 1 cut(s) 88
FaeI CATG 1 cut(s) 127
FaiI YATR 3 cut(s) 34, 36, 125
FatI CATG 1 cut(s) 123
FblI GTMKAC 1 cut(s) 60
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 283
GluI GCNGC 1 cut(s) 5
Hin1II CATG 1 cut(s) 127
HincII GTYRAC 2 cut(s) 61, 175
HindII GTYRAC 2 cut(s) 61, 175
HphI GGTGA 2 cut(s) 58, 200
Hpy166II GTNNAC 2 cut(s) 61, 175
Hpy188I TCNGA 4 cut(s) 76, 139, 165, 261
Hpy188III TCNNGA 4 cut(s) 124, 200, 247, 273
Hpy8I GTNNAC 2 cut(s) 61, 175
HpyAV CCTTC 2 cut(s) 71, 170
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 3 cut(s) 115, 120, 225
HpyF10VI GCNNNNNNNGC 1 cut(s) 165
HpyF3I CTNAG 3 cut(s) 95, 107, 164
Hsp92II CATG 1 cut(s) 127
Kzo9I GATC 3 cut(s) 48, 145, 209
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 4 cut(s) 10, 21, 29, 163
LweI GCATC 1 cut(s) 129
MaeI CTAG 1 cut(s) 283
MalI GATC 3 cut(s) 50, 147, 211
MboI GATC 3 cut(s) 48, 145, 209
MboII GAAGA 3 cut(s) 126, 155, 261
MflI RGATCY 1 cut(s) 209
MnlI CCTC 2 cut(s) 101, 104
MslI CAYNNNNRTG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 165
NdeII GATC 3 cut(s) 48, 145, 209
NlaIII CATG 1 cut(s) 127
NlaIV GGNNCC 1 cut(s) 89
PagI TCATGA 1 cut(s) 123
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PkrI GCNGC 1 cut(s) 6
PpuMI RGGWCCY 1 cut(s) 88
Psp5II RGGWCCY 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 89
PspPI GGNCC 1 cut(s) 88
PspPPI RGGWCCY 1 cut(s) 88
PstI CTGCAG 1 cut(s) 117
PsuI RGATCY 1 cut(s) 209
RseI CAYNNNNRTG 1 cut(s) 128
SalI GTCGAC 1 cut(s) 59
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 3 cut(s) 48, 145, 209
Sau96I GGNCC 1 cut(s) 88
SetI ASST 5 cut(s) 82, 170, 182, 197, 240
SfaNI GCATC 1 cut(s) 129
SfcI CTRYAG 1 cut(s) 113
SinI GGWCC 1 cut(s) 88
SmiMI CAYNNNNRTG 1 cut(s) 128
SspMI CTAG 1 cut(s) 283
TaaI ACNGT 1 cut(s) 58
TaqI TCGA 3 cut(s) 51, 60, 201
TscAI CASTG 2 cut(s) 122, 232
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 2 cut(s) 140, 156
TspRI CASTG 2 cut(s) 122, 232
VpaK11BI GGWCC 1 cut(s) 88
XmiI GTMKAC 1 cut(s) 60
XspI CTAG 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.