MD07G1089500.v1.1

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0024474
Physical Location & Seq
Reverse (-)
9339066 .. 9340293
1228 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1089500.v1.1.491

Sequence Viewer

Length: 999 bp
ATGTTATTCAGTGAAATTCTGGCAAGTCTTGGTAGTTGTATAAAATTAGAATACCTAGACATGCATGAAAATTTCTTCCATGGGACGATTCCATCAACTTTGAGTTCACTAAGAGTTCTTACAAAATTGTATCTTTCTGACAACAACTTGTCAGGAGCAATTCCAGAATTCTTAGAACATTTGAATTTTTTGGAATCTCTAAATCTATCTTATAAAAATTTTGAGGCCATGTTGCCGATCAAGGGAGTGTTCAAGAATGCAATGGCAACATCAGTTGAAGGAAATAGTAAGCTTTCGGGGGGGGGGGCATATCTGAGTTTCATTTGCCAAAGTGCAACTCTCAAGCATCCAAAAAATGAAGGATTGAGCTTAACCATGAAATTGGTTCTCTCTCTCATTTGTACTCAACCTCGTTCATTTAGCAGGGCTTACAAAAGTTTTATTGCTGAGTGTGAGGCTTTCCGAAATATTAGACACCATAATCTTGTCAAAGTACTCTCAACATGTTCTGGTTTTGATTATCGCGGTCCCAACTTCAAGGCCTTAATTTATGAGTTCATGGCTAACGGGAGCTTGGAGGAATGGCTATATCCAATTCATACAATTGGTGAGACAAATGAGAGGCCAACGAGCTTAACAATTTCCTGGAGGTTGAATATTGTTTTTGATGTTGCTATGGCATTGGATTATCTCTATCGTCATTGTGAGACGCCAATAGTTCATTGCGACCCCAAACCTAGCAATATTCTTCTCAATGAGTATATGATTGCACATGTCGATGACTTTGGGTTGGTGAGGTTCCAACCAAAAGTTGCAGAAACACTACCAAAAATATGGGCTTTGATGTACACAAATGAAGAGTTTGTGTCTTTGAGAACACTAATATGGTGGATCAATGTCCATTCAATAAAGGACACTTTGTATTGTGCCCATTGTAAACAAAATGGACACAAACACATTATTGGGCACGAAGCCATGCAAAGTAGCACATATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

333

Amino Acids

37.82

Weight (kDa)

6.73

Isoelectric Point (pI)

30.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 15 - 71 6.8e-06 Leucine rich repeat
PK_Tyr_Ser-Thr PF07714 141 - 268 1.3e-14 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 143 - 273 2.8e-13 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024474)

Species Orthologous Gene IDs
malus_domestica MD07G1089500.v1.1
pyrus_communis pycom02g18010 pycom07g07160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 213
AccII CGCG 1 cut(s) 525
AciI CCGC 1 cut(s) 525
AclWI GGATC 1 cut(s) 899
AcsI RAATTY 5 cut(s) 15, 70, 167, 184, 217
AcyI GRCGYC 1 cut(s) 710
AfaI GTAC 3 cut(s) 403, 495, 848
AfiI CCNNNNNNNGG 1 cut(s) 242
AflIII ACRYGT 2 cut(s) 503, 772
AgsI TTSAA 6 cut(s) 184, 253, 278, 538, 655, 906
AjnI CCWGG 1 cut(s) 644
AluBI AGCT 4 cut(s) 292, 369, 573, 633
AluI AGCT 4 cut(s) 292, 369, 573, 633
Alw26I GTCTC 2 cut(s) 605, 701
AlwI GGATC 1 cut(s) 899
AoxI GGCC 3 cut(s) 225, 540, 623
ApoI RAATTY 5 cut(s) 15, 70, 167, 184, 217
AspS9I GGNCC 1 cut(s) 527
AsuHPI GGTGA 2 cut(s) 620, 805
AvaII GGWCC 1 cut(s) 527
BaeGI GKGCMC 2 cut(s) 931, 969
BccI CCATC 1 cut(s) 100
BciT130I CCWGG 1 cut(s) 646
BcoDI GTCTC 2 cut(s) 605, 701
BfaI CTAG 2 cut(s) 56, 738
BmcAI AGTACT 1 cut(s) 495
Bme1390I CCNGG 1 cut(s) 646
Bme18I GGWCC 1 cut(s) 527
BmgT120I GGNCC 1 cut(s) 527
BmiI GGNNCC 2 cut(s) 529, 800
BmrFI CCNGG 1 cut(s) 646
BmsI GCATC 1 cut(s) 355
BpmI CTGGAG 1 cut(s) 667
BpuEI CTTGAG 1 cut(s) 326
BsaHI GRCGYC 1 cut(s) 710
BsaJI CCNNGG 1 cut(s) 79
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse3DI GCAATG 2 cut(s) 267, 721
BseBI CCWGG 1 cut(s) 646
BseDI CCNNGG 1 cut(s) 79
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 1 cut(s) 242
BseMI GCAATG 2 cut(s) 267, 721
BseMII CTCAG 2 cut(s) 305, 438
BseSI GKGCMC 2 cut(s) 931, 969
Bsh1236I CGCG 1 cut(s) 525
BshFI GGCC 3 cut(s) 227, 542, 625
BslFI GGGAC 2 cut(s) 97, 513
BslI CCNNNNNNNGG 1 cut(s) 242
BsmAI GTCTC 2 cut(s) 605, 701
BsmBI CGTCTC 1 cut(s) 701
BsmFI GGGAC 2 cut(s) 97, 513
BsmI GAATGC 1 cut(s) 262
BsnI GGCC 3 cut(s) 227, 542, 625
Bsp1286I GDGCHC 2 cut(s) 931, 969
Bsp1407I TGTACA 1 cut(s) 846
Bsp143I GATC 2 cut(s) 237, 891
Bsp19I CCATGG 1 cut(s) 79
BspACI CCGC 1 cut(s) 525
BspANI GGCC 3 cut(s) 227, 542, 625
BspCNI CTCAG 2 cut(s) 306, 439
BspFNI CGCG 1 cut(s) 525
BspLI GGNNCC 2 cut(s) 529, 800
BspPI GGATC 1 cut(s) 899
BsrDI GCAATG 2 cut(s) 267, 721
BsrGI TGTACA 1 cut(s) 846
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 2 cut(s) 237, 891
BssNI GRCGYC 1 cut(s) 710
BssT1I CCWWGG 1 cut(s) 79
Bst2UI CCWGG 1 cut(s) 646
Bst6I CTCTTC 1 cut(s) 852
BstACI GRCGYC 1 cut(s) 710
BstAUI TGTACA 1 cut(s) 846
BstDEI CTNAG 4 cut(s) 110, 172, 314, 447
BstDSI CCRYGG 1 cut(s) 79
BstF5I GGATG 1 cut(s) 346
BstFNI CGCG 1 cut(s) 525
BstKTI GATC 2 cut(s) 240, 894
BstMAI GTCTC 2 cut(s) 605, 701
BstMBI GATC 2 cut(s) 237, 891
BstNI CCWGG 1 cut(s) 646
BstNSI RCATGY 3 cut(s) 64, 507, 776
BstSCI CCNGG 1 cut(s) 644
BstSLI GKGCMC 2 cut(s) 931, 969
BstUI CGCG 1 cut(s) 525
BstXI CCANNNNNNTGG 2 cut(s) 382, 834
BsuRI GGCC 3 cut(s) 227, 542, 625
BtgI CCRYGG 1 cut(s) 79
BtsCI GGATG 1 cut(s) 346
BtsIMutI CAGTG 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 527
CseI GACGC 1 cut(s) 718
Csp6I GTAC 3 cut(s) 402, 494, 847
CviAII CATG 9 cut(s) 61, 65, 80, 229, 376, 504, 559, 773, 976
CviQI GTAC 3 cut(s) 402, 494, 847
DdeI CTNAG 4 cut(s) 110, 172, 314, 447
DpnI GATC 2 cut(s) 239, 893
DpnII GATC 2 cut(s) 237, 891
Eam1104I CTCTTC 1 cut(s) 852
EarI CTCTTC 1 cut(s) 852
Eco130I CCWWGG 1 cut(s) 79
Eco147I AGGCCT 1 cut(s) 542
Eco47I GGWCC 1 cut(s) 527
EcoRI GAATTC 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 644
EcoT14I CCWWGG 1 cut(s) 79
EcoT22I ATGCAT 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 79
Esp3I CGTCTC 1 cut(s) 701
FaeI CATG 9 cut(s) 64, 68, 83, 232, 379, 507, 562, 776, 979
FaqI GGGAC 2 cut(s) 97, 513
FatI CATG 9 cut(s) 60, 64, 79, 228, 375, 503, 558, 772, 975
FokI GGATG 1 cut(s) 333
FspBI CTAG 2 cut(s) 56, 738
GsuI CTGGAG 1 cut(s) 667
HaeIII GGCC 3 cut(s) 227, 542, 625
HgaI GACGC 1 cut(s) 718
Hin1I GRCGYC 1 cut(s) 710
Hin1II CATG 9 cut(s) 64, 68, 83, 232, 379, 507, 562, 776, 979
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 2 cut(s) 88, 194
HphI GGTGA 2 cut(s) 620, 805
Hpy166II GTNNAC 3 cut(s) 107, 849, 938
Hpy188I TCNGA 3 cut(s) 139, 315, 464
Hpy188III TCNNGA 3 cut(s) 153, 164, 253
Hpy8I GTNNAC 3 cut(s) 107, 849, 938
HpyAV CCTTC 2 cut(s) 272, 353
HpyCH4V TGCA 6 cut(s) 64, 260, 335, 770, 815, 979
HpyF3I CTNAG 4 cut(s) 110, 172, 314, 447
Hsp92I GRCGYC 1 cut(s) 710
Hsp92II CATG 9 cut(s) 64, 68, 83, 232, 379, 507, 562, 776, 979
Kzo9I GATC 2 cut(s) 237, 891
LmnI GCTCC 2 cut(s) 155, 570
LpnPI CCDG 7 cut(s) 5, 138, 177, 409, 495, 631, 658
LweI GCATC 1 cut(s) 355
MaeI CTAG 2 cut(s) 56, 738
MalI GATC 2 cut(s) 239, 893
MboI GATC 2 cut(s) 237, 891
MboII GAAGA 3 cut(s) 67, 740, 869
MfeI CAATTG 1 cut(s) 603
MhlI GDGCHC 2 cut(s) 931, 969
MmeI TCCRAC 1 cut(s) 826
MnlI CCTC 7 cut(s) 217, 420, 448, 571, 615, 642, 789
Mph1103I ATGCAT 1 cut(s) 66
MseI TTAA 3 cut(s) 371, 545, 635
MslI CAYNNNNRTG 2 cut(s) 777, 883
MspR9I CCNGG 1 cut(s) 646
MunI CAATTG 1 cut(s) 603
Mva1269I GAATGC 1 cut(s) 262
MvaI CCWGG 1 cut(s) 646
MvnI CGCG 1 cut(s) 525
NcoI CCATGG 1 cut(s) 79
NdeII GATC 2 cut(s) 237, 891
NlaIII CATG 9 cut(s) 64, 68, 83, 232, 379, 507, 562, 776, 979
NlaIV GGNNCC 2 cut(s) 529, 800
NsiI ATGCAT 1 cut(s) 66
NspI RCATGY 3 cut(s) 64, 507, 776
PceI AGGCCT 1 cut(s) 542
PciI ACATGT 2 cut(s) 503, 772
PctI GAATGC 1 cut(s) 262
PfeI GAWTC 2 cut(s) 88, 194
PfoI TCCNGGA 1 cut(s) 644
PscI ACATGT 2 cut(s) 503, 772
PsiI TTATAA 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 644
PspGI CCWGG 1 cut(s) 644
PspN4I GGNNCC 2 cut(s) 529, 800
PspPI GGNCC 1 cut(s) 527
RsaI GTAC 3 cut(s) 403, 495, 848
RsaNI GTAC 3 cut(s) 402, 494, 847
RseI CAYNNNNRTG 2 cut(s) 777, 883
SaqAI TTAA 3 cut(s) 371, 545, 635
Sau3AI GATC 2 cut(s) 237, 891
Sau96I GGNCC 1 cut(s) 527
ScaI AGTACT 1 cut(s) 495
ScrFI CCNGG 1 cut(s) 646
SduI GDGCHC 2 cut(s) 931, 969
SetI ASST 9 cut(s) 57, 294, 371, 412, 575, 635, 653, 739, 800
SfaNI GCATC 1 cut(s) 355
SinI GGWCC 1 cut(s) 527
SmiMI CAYNNNNRTG 2 cut(s) 777, 883
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
SseBI AGGCCT 1 cut(s) 542
SsiI CCGC 1 cut(s) 525
SspI AATATT 3 cut(s) 469, 658, 745
SspMI CTAG 2 cut(s) 56, 738
StuI AGGCCT 1 cut(s) 542
StyD4I CCNGG 1 cut(s) 644
StyI CCWWGG 1 cut(s) 79
TaqI TCGA 1 cut(s) 777
TatI WGTACW 3 cut(s) 401, 493, 846
TfiI GAWTC 2 cut(s) 88, 194
Tru1I TTAA 3 cut(s) 371, 545, 635
Tru9I TTAA 3 cut(s) 371, 545, 635
TscAI CASTG 1 cut(s) 16
TspDTI ATGAA 9 cut(s) 81, 310, 372, 392, 405, 547, 587, 710, 870
TspRI CASTG 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 527
XapI RAATTY 5 cut(s) 15, 70, 167, 184, 217
XceI RCATGY 3 cut(s) 64, 507, 776
XspI CTAG 2 cut(s) 56, 738
ZrmI AGTACT 1 cut(s) 495
Zsp2I ATGCAT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.