pycom02g18010

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
16282852 .. 16289442
6591 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g18010.1

Sequence Viewer

Length: 771 bp
ATGCATGGAAATTTCTTCCATGGGACGATTCCATCAACTTTGAGTTCACTAAGAGTTCTTACAGAATTGTATCTTTATGACAACTTGTCAGGAGCAATTCCAGAATTCTTAGAACATTTGAATTTTTTGGAATCTCTGAATCTATCTTATAACAATTTTGAGGGCATGTTGCCGATCAAGGGAGTGTTCAAGAATGCAATGGCGACATCAGTTGAAGGAAATAGCAAGCTTTCGGGGGGCATATCTGAGTTTCATTTGCCAAACACGGCTTACAAAAGTTTTATTTATGAGTGCGAGGCTTTCCGAAATATTAGACACCGTAATCTTGTCAAAATAGTCTTAGTATGTTCTGGTTTTGATTATTGCGGTCACGACTTCAAGGTCTTAATTTACGAGTTCATGGCTAACGGGAGCTTGGAGGAATGGCTATATCCAATTCATACAATTGGTGAAACAAATGAGAGGCCAAGGACCTTAACAATTTCTCAGAGTTTGAATATTGTTTTTGAAGTTGCTATGGCATTGGATTATCTCCATCGTCATTGTGAGACGCCAGTAGTTCATTGCAACCTCAAACCTAGCAATATTCTTCTCAATGAGGATATGATTACACATGTAGGTGACTTTGGGTTGGTGAGGTTCCTACCAAAAGTTGCTGAAACACTACGAAAAATATGGGCTTTGGTGTACACAAATGAAGAGTTTGTGTCTTTGAGAACACTAATATGGTGGAACAGTGTCCATTCAACAAAGGATACGATGTATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

257

Amino Acids

29.44

Weight (kDa)

5.93

Isoelectric Point (pI)

28.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 90 - 216 2.2e-17 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 92 - 227 1.1e-16 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0024474)

Species Orthologous Gene IDs
malus_domestica MD07G1089500.v1.1
pyrus_communis pycom02g18010 pycom07g07160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 150
AasI GACNNNNNNGTC 1 cut(s) 380
AciI CCGC 1 cut(s) 366
AcsI RAATTY 3 cut(s) 10, 104, 121
AcyI GRCGYC 1 cut(s) 551
AfaI GTAC 1 cut(s) 689
AfiI CCNNNNNNNGG 1 cut(s) 179
AflIII ACRYGT 1 cut(s) 613
AgsI TTSAA 7 cut(s) 121, 190, 215, 379, 496, 509, 747
AhdI GACNNNNNGTC 1 cut(s) 85
AluBI AGCT 2 cut(s) 229, 414
AluI AGCT 2 cut(s) 229, 414
Alw26I GTCTC 1 cut(s) 542
AoxI GGCC 1 cut(s) 464
ApoI RAATTY 3 cut(s) 10, 104, 121
AspS9I GGNCC 1 cut(s) 471
AsuHPI GGTGA 3 cut(s) 461, 632, 646
AvaII GGWCC 1 cut(s) 471
BccI CCATC 2 cut(s) 40, 543
BceAI ACGGC 1 cut(s) 282
BciVI GTATCC 1 cut(s) 748
BcoDI GTCTC 1 cut(s) 542
BfaI CTAG 1 cut(s) 579
BfuI GTATCC 1 cut(s) 748
Bme18I GGWCC 1 cut(s) 471
BmeRI GACNNNNNGTC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 471
BmiI GGNNCC 1 cut(s) 641
BsaHI GRCGYC 1 cut(s) 551
BsaJI CCNNGG 2 cut(s) 19, 467
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse1I ACTGG 1 cut(s) 554
Bse3DI GCAATG 2 cut(s) 204, 562
BseDI CCNNGG 2 cut(s) 19, 467
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMI GCAATG 2 cut(s) 204, 562
BseMII CTCAG 2 cut(s) 237, 500
BseNI ACTGG 1 cut(s) 554
BshFI GGCC 1 cut(s) 466
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 1 cut(s) 179
BsmAI GTCTC 1 cut(s) 542
BsmBI CGTCTC 1 cut(s) 542
BsmFI GGGAC 1 cut(s) 37
BsmI GAATGC 1 cut(s) 199
BsnI GGCC 1 cut(s) 466
Bsp1407I TGTACA 1 cut(s) 687
Bsp143I GATC 1 cut(s) 174
Bsp19I CCATGG 1 cut(s) 19
BspACI CCGC 1 cut(s) 366
BspANI GGCC 1 cut(s) 466
BspCNI CTCAG 2 cut(s) 238, 499
BspLI GGNNCC 1 cut(s) 641
BsrDI GCAATG 2 cut(s) 204, 562
BsrGI TGTACA 1 cut(s) 687
BsrI ACTGG 1 cut(s) 554
BssECI CCNNGG 2 cut(s) 19, 467
BssMI GATC 1 cut(s) 174
BssNI GRCGYC 1 cut(s) 551
BssT1I CCWWGG 2 cut(s) 19, 467
Bst4CI ACNGT 2 cut(s) 320, 737
Bst6I CTCTTC 1 cut(s) 693
BstACI GRCGYC 1 cut(s) 551
BstAUI TGTACA 1 cut(s) 687
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 5 cut(s) 50, 109, 246, 340, 486
BstDSI CCRYGG 1 cut(s) 19
BstKTI GATC 1 cut(s) 177
BstMAI GTCTC 1 cut(s) 542
BstMBI GATC 1 cut(s) 174
BstNSI RCATGY 2 cut(s) 169, 617
BsuI GTATCC 1 cut(s) 748
BsuRI GGCC 1 cut(s) 466
BtgI CCRYGG 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 742
Cac8I GCNNGC 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 471
CseI GACGC 1 cut(s) 559
Csp6I GTAC 1 cut(s) 688
CviAII CATG 5 cut(s) 5, 20, 166, 400, 614
CviJI RGCY 8 cut(s) 229, 269, 299, 404, 414, 427, 466, 680
CviKI_1 RGCY 8 cut(s) 229, 269, 299, 404, 414, 427, 466, 680
CviQI GTAC 1 cut(s) 688
DdeI CTNAG 5 cut(s) 50, 109, 246, 340, 486
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
DrdI GACNNNNNNGTC 1 cut(s) 380
DriI GACNNNNNGTC 1 cut(s) 85
DseDI GACNNNNNNGTC 1 cut(s) 380
Eam1104I CTCTTC 1 cut(s) 693
Eam1105I GACNNNNNGTC 1 cut(s) 85
EarI CTCTTC 1 cut(s) 693
Eco130I CCWWGG 2 cut(s) 19, 467
Eco47I GGWCC 1 cut(s) 471
EcoO109I RGGNCCY 1 cut(s) 471
EcoRI GAATTC 1 cut(s) 104
EcoT14I CCWWGG 2 cut(s) 19, 467
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 19, 467
Esp3I CGTCTC 1 cut(s) 542
FaeI CATG 5 cut(s) 8, 23, 169, 403, 617
FaqI GGGAC 1 cut(s) 37
FatI CATG 5 cut(s) 4, 19, 165, 399, 613
FspBI CTAG 1 cut(s) 579
HaeIII GGCC 1 cut(s) 466
HgaI GACGC 1 cut(s) 559
Hin1I GRCGYC 1 cut(s) 551
Hin1II CATG 5 cut(s) 8, 23, 169, 403, 617
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 3 cut(s) 28, 131, 139
HphI GGTGA 3 cut(s) 461, 632, 646
Hpy166II GTNNAC 3 cut(s) 47, 688, 690
Hpy188I TCNGA 4 cut(s) 138, 247, 305, 489
Hpy188III TCNNGA 4 cut(s) 90, 101, 190, 371
Hpy8I GTNNAC 3 cut(s) 47, 688, 690
HpyAV CCTTC 1 cut(s) 209
HpyCH4III ACNGT 2 cut(s) 320, 737
HpyCH4V TGCA 3 cut(s) 4, 197, 567
HpyF3I CTNAG 5 cut(s) 50, 109, 246, 340, 486
Hsp92I GRCGYC 1 cut(s) 551
Hsp92II CATG 5 cut(s) 8, 23, 169, 403, 617
Kzo9I GATC 1 cut(s) 174
LmnI GCTCC 2 cut(s) 92, 411
LpnPI CCDG 4 cut(s) 75, 114, 336, 567
MaeI CTAG 1 cut(s) 579
MaeIII GTNAC 2 cut(s) 368, 620
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 3 cut(s) 7, 581, 710
MfeI CAATTG 1 cut(s) 444
MnlI CCTC 7 cut(s) 154, 289, 412, 456, 581, 592, 630
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 386, 476
MslI CAYNNNNRTG 2 cut(s) 618, 724
MunI CAATTG 1 cut(s) 444
Mva1269I GAATGC 1 cut(s) 199
NcoI CCATGG 1 cut(s) 19
NdeII GATC 1 cut(s) 174
NlaIII CATG 5 cut(s) 8, 23, 169, 403, 617
NlaIV GGNNCC 1 cut(s) 641
NmuCI GTSAC 2 cut(s) 368, 620
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 169, 617
PciI ACATGT 1 cut(s) 613
PctI GAATGC 1 cut(s) 199
PfeI GAWTC 3 cut(s) 28, 131, 139
PpuMI RGGWCCY 1 cut(s) 471
PscI ACATGT 1 cut(s) 613
PsiI TTATAA 1 cut(s) 150
Psp5II RGGWCCY 1 cut(s) 471
PspN4I GGNNCC 1 cut(s) 641
PspPI GGNCC 1 cut(s) 471
PspPPI RGGWCCY 1 cut(s) 471
RsaI GTAC 1 cut(s) 689
RsaNI GTAC 1 cut(s) 688
RseI CAYNNNNRTG 2 cut(s) 618, 724
SaqAI TTAA 2 cut(s) 386, 476
Sau3AI GATC 1 cut(s) 174
Sau96I GGNCC 1 cut(s) 471
SetI ASST 8 cut(s) 231, 384, 416, 476, 573, 580, 622, 641
SinI GGWCC 1 cut(s) 471
SmiMI CAYNNNNRTG 2 cut(s) 618, 724
SsiI CCGC 1 cut(s) 366
SspI AATATT 3 cut(s) 310, 499, 586
SspMI CTAG 1 cut(s) 579
StyI CCWWGG 2 cut(s) 19, 467
TaaI ACNGT 2 cut(s) 320, 737
TatI WGTACW 1 cut(s) 687
TfiI GAWTC 3 cut(s) 28, 131, 139
Tru1I TTAA 2 cut(s) 386, 476
Tru9I TTAA 2 cut(s) 386, 476
TscAI CASTG 1 cut(s) 742
TseFI GTSAC 2 cut(s) 368, 620
Tsp45I GTSAC 2 cut(s) 368, 620
TspDTI ATGAA 5 cut(s) 242, 388, 428, 551, 711
TspRI CASTG 1 cut(s) 742
VpaK11BI GGWCC 1 cut(s) 471
XapI RAATTY 3 cut(s) 10, 104, 121
XceI RCATGY 2 cut(s) 169, 617
XspI CTAG 1 cut(s) 579
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.