Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0020400

Physical Location & Seq

Genomic Coordinates Forward (+)

24739856 .. 24741009

Gene Structure 1154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1171300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAGTCTGGAGGAGCTGGTACCATCAAACAAGTCTCACGTATACGCAATCTTAATTAGAACGGCACTGGTTGTCTCTACCCTGGTTGTCGGTCTCTGCATCCCCTTCTTTGGTCTCGTGATGTCGCTGATTGGATCTTTATTTACAATGCTTGTAACATTGATACTTCCATGTGCTTGTTATCTGAGCATCTTGAGGGGACGCATAACTCGATTTCAGGGAACACTTTGTATTATAATTATAATGGTAGGCGTTGTATCATCCGCGTTCGGGACATTTTCGGCCATTTCGAAAATTGTTGAGAGCTTGAGAAGCCCTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

108

Amino Acids

11.52

Weight (kDa)

9.2

Isoelectric Point (pI)

50.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	9 - 96	9.2e-14	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020400)

Species	Orthologous Gene IDs
malus_domestica	MD07G1171300.v1.1
rosa_chinensis	RchiOBHm_Chr1g0362821
rosa_multiflora	Rmu_sc0035177.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293740
rosa_samantha	Rh1AG310500 Rh1DG304400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	236, 242
Acc65I	GGTACC	1 cut(s)	19
AccB1I	GGYRCC	1 cut(s)	19
AccI	GTMKAC	1 cut(s)	42
AccII	CGCG	1 cut(s)	266
AciI	CCGC	1 cut(s)	264
AclWI	GGATC	1 cut(s)	142
AcoI	YGGCCR	1 cut(s)	282
AfaI	GTAC	1 cut(s)	21
AfiI	CCNNNNNNNGG	2 cut(s)	110, 270
AjnI	CCWGG	1 cut(s)	81
AluBI	AGCT	2 cut(s)	16, 306
AluI	AGCT	2 cut(s)	16, 306
Alw26I	GTCTC	4 cut(s)	39, 79, 98, 119
AlwI	GGATC	1 cut(s)	142
AoxI	GGCC	1 cut(s)	282
Asp718I	GGTACC	1 cut(s)	19
AsuII	TTCGAA	1 cut(s)	290
BanI	GGYRCC	1 cut(s)	19
BauI	CACGAG	1 cut(s)	116
BccI	CCATC	1 cut(s)	31
BceAI	ACGGC	1 cut(s)	78
BciT130I	CCWGG	1 cut(s)	83
BcoDI	GTCTC	4 cut(s)	39, 79, 98, 119
Bme1390I	CCNGG	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	2 cut(s)	108, 198
BpmI	CTGGAG	1 cut(s)	29
Bpu14I	TTCGAA	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	214
BsaAI	YACGTR	1 cut(s)	40
BsaI	GGTCTC	2 cut(s)	98, 119
BsaJI	CCNNGG	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 270
Bse1I	ACTGG	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	2 cut(s)	99, 260
BseLI	CCNNNNNNNGG	2 cut(s)	110, 270
BseMII	CTCAG	1 cut(s)	176
BseNI	ACTGG	1 cut(s)	72
BseRI	GAGGAG	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	266
BshFI	GGCC	1 cut(s)	284
BshNI	GGYRCC	1 cut(s)	19
BslFI	GGGAC	2 cut(s)	213, 286
BslI	CCNNNNNNNGG	2 cut(s)	110, 270
BsmAI	GTCTC	4 cut(s)	39, 79, 98, 119
BsmFI	GGGAC	2 cut(s)	213, 286
BsnI	GGCC	1 cut(s)	284
Bso31I	GGTCTC	2 cut(s)	98, 119
Bsp119I	TTCGAA	1 cut(s)	290
Bsp143I	GATC	1 cut(s)	134
BspACI	CCGC	1 cut(s)	264
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	1 cut(s)	177
BspFNI	CGCG	1 cut(s)	266
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	1 cut(s)	142
BspT104I	TTCGAA	1 cut(s)	290
BspT107I	GGYRCC	1 cut(s)	19
BspTNI	GGTCTC	2 cut(s)	98, 119
BsrI	ACTGG	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	1 cut(s)	134
BssNAI	GTATAC	1 cut(s)	43
BssSI	CACGAG	1 cut(s)	116
Bst1107I	GTATAC	1 cut(s)	43
Bst2BI	CACGAG	1 cut(s)	116
Bst2UI	CCWGG	1 cut(s)	83
BstBAI	YACGTR	1 cut(s)	40
BstBI	TTCGAA	1 cut(s)	290
BstDEI	CTNAG	1 cut(s)	185
BstF5I	GGATG	2 cut(s)	99, 260
BstFNI	CGCG	1 cut(s)	266
BstKTI	GATC	1 cut(s)	137
BstMAI	GTCTC	4 cut(s)	39, 79, 98, 119
BstMBI	GATC	1 cut(s)	134
BstMWI	GCNNNNNNNGC	1 cut(s)	312
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	81
BstUI	CGCG	1 cut(s)	266
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BstZ17I	GTATAC	1 cut(s)	43
BsuRI	GGCC	1 cut(s)	284
BtsCI	GGATG	2 cut(s)	99, 260
BtsIMutI	CAGTG	1 cut(s)	65
CseI	GACGC	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	20
CviAII	CATG	1 cut(s)	171
CviJI	RGCY	4 cut(s)	16, 284, 306, 315
CviKI_1	RGCY	4 cut(s)	16, 284, 306, 315
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	1 cut(s)	136
DpnII	GATC	1 cut(s)	134
EaeI	YGGCCR	1 cut(s)	282
Eco31I	GGTCTC	2 cut(s)	98, 119
EcoRII	CCWGG	1 cut(s)	81
FaeI	CATG	1 cut(s)	174
FaiI	YATR	6 cut(s)	43, 172, 206, 236, 242, 322
FaqI	GGGAC	2 cut(s)	213, 286
FatI	CATG	1 cut(s)	170
FblI	GTMKAC	1 cut(s)	42
FokI	GGATG	2 cut(s)	86, 247
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	284
HgaI	GACGC	1 cut(s)	210
Hin1II	CATG	1 cut(s)	174
HinfI	GANTC	1 cut(s)	4
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	186
Hpy188III	TCNNGA	4 cut(s)	8, 118, 193, 271
Hpy8I	GTNNAC	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	1 cut(s)	99
HpyF10VI	GCNNNNNNNGC	1 cut(s)	312
HpyF3I	CTNAG	1 cut(s)	185
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	174
KpnI	GGTACC	1 cut(s)	23
Kzo9I	GATC	1 cut(s)	134
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	5 cut(s)	2, 53, 68, 95, 203
LweI	GCATC	2 cut(s)	108, 198
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	1 cut(s)	136
MboI	GATC	1 cut(s)	134
MflI	RGATCY	1 cut(s)	134
MluCI	AATT	3 cut(s)	54, 237, 294
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	2 cut(s)	4, 189
MseI	TTAA	1 cut(s)	53
MspR9I	CCNGG	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	312
NdeII	GATC	1 cut(s)	134
NlaIII	CATG	1 cut(s)	174
NlaIV	GGNNCC	1 cut(s)	21
NspV	TTCGAA	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	2 cut(s)	208, 287
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Ppu21I	YACGTR	1 cut(s)	40
PsiI	TTATAA	2 cut(s)	236, 242
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	21
PsuI	RGATCY	1 cut(s)	134
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	53
Sau3AI	GATC	1 cut(s)	134
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	83
SetI	ASST	3 cut(s)	18, 42, 308
SfaNI	GCATC	2 cut(s)	108, 198
SfuI	TTCGAA	1 cut(s)	290
SmlI	CTYRAG	2 cut(s)	193, 307
SmoI	CTYRAG	2 cut(s)	193, 307
Sse9I	AATT	3 cut(s)	54, 237, 294
SsiI	CCGC	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	81
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	2 cut(s)	211, 290
TaqII	GACCGA	1 cut(s)	80
TasI	AATT	3 cut(s)	54, 237, 294
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TscAI	CASTG	1 cut(s)	72
TspRI	CASTG	1 cut(s)	72
XmiI	GTMKAC	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.