RchiOBHm_Chr1g0362821

Amino acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0020400
Physical Location & Seq
Forward (+)
54438281 .. 54439365
1085 bp
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UTR
Exon/CDS
Intron
PRQ58760

Sequence Viewer

Length: 318 bp
ATGAGTCTGGAGGAGCTGGTACCATCAGACAAATCTCGCATGTACTCTATCTTTATTAGAACAGGGCTGGTGCTCTCTACCCTGGTGGTCGGTCTTTGTGTACCTTTCTTTGGTCTCATGATGTCATTGATCGGATCTTTATTCACAATGCTTGTAGCCTTGATACTTCCTTGTGCTTGTTATCTGAGTATCCTCAAGGGACGAGTAACTCGTTTTCAGATGATACTTTGTATTATAATTATTACAGTAGGTGTCGTAGCATCTGGTTTCGGAACATATTCAGCTGTAACTAAAATCGTAGAGAATTTGAGCAGCTGA

Protein Analysis

105

Amino Acids

11.37

Weight (kDa)

8.84

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 10 - 95 4.6e-13 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020400)

Species Orthologous Gene IDs
malus_domestica MD07G1171300.v1.1
rosa_chinensis RchiOBHm_Chr1g0362821
rosa_multiflora Rmu_sc0035177.1_g000001
rosa_roxburghii Rroxscaffold_4G00293740
rosa_samantha Rh1AG310500 Rh1DG304400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 236
Acc65I GGTACC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 19
AclWI GGATC 1 cut(s) 142
AcsI RAATTY 1 cut(s) 304
AfaI GTAC 3 cut(s) 21, 44, 102
AfiI CCNNNNNNNGG 1 cut(s) 110
AjnI CCWGG 1 cut(s) 81
AluBI AGCT 3 cut(s) 16, 284, 315
AluI AGCT 3 cut(s) 16, 284, 315
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 312
ApoI RAATTY 1 cut(s) 304
Asp700I GAANNNNTTC 1 cut(s) 277
Asp718I GGTACC 1 cut(s) 19
BanI GGYRCC 1 cut(s) 19
Bbv12I GWGCWC 1 cut(s) 75
BccI CCATC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 83
BciVI GTATCC 1 cut(s) 200
BcoDI GTCTC 1 cut(s) 119
BfuI GTATCC 1 cut(s) 200
BisI GCNGC 1 cut(s) 313
BlsI GCNGC 1 cut(s) 314
Bme1390I CCNGG 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 21
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 269
BpmI CTGGAG 1 cut(s) 29
BpuEI CTTGAG 1 cut(s) 179
BsaI GGTCTC 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 81
Bsc4I CCNNNNNNNGG 1 cut(s) 110
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 1 cut(s) 176
BseRI GAGGAG 1 cut(s) 26
BshNI GGYRCC 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 75
BslFI GGGAC 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 213
Bso31I GGTCTC 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 2 cut(s) 129, 134
BspCNI CTCAG 1 cut(s) 177
BspHI TCATGA 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 21
BspPI GGATC 1 cut(s) 142
BspT107I GGYRCC 1 cut(s) 19
BspTNI GGTCTC 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 2 cut(s) 129, 134
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 247
BstDEI CTNAG 1 cut(s) 185
BstKTI GATC 2 cut(s) 132, 137
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 2 cut(s) 129, 134
BstNI CCWGG 1 cut(s) 83
BstNSI RCATGY 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BsuI GTATCC 1 cut(s) 200
CciI TCATGA 1 cut(s) 117
Csp6I GTAC 3 cut(s) 20, 43, 101
CviAII CATG 2 cut(s) 40, 118
CviJI RGCY 5 cut(s) 16, 67, 158, 284, 315
CviKI_1 RGCY 5 cut(s) 16, 67, 158, 284, 315
CviQI GTAC 3 cut(s) 20, 43, 101
DdeI CTNAG 1 cut(s) 185
DpnI GATC 2 cut(s) 131, 136
DpnII GATC 2 cut(s) 129, 134
Eco31I GGTCTC 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 81
FaeI CATG 2 cut(s) 43, 121
FaiI YATR 4 cut(s) 41, 119, 236, 277
FaqI GGGAC 1 cut(s) 213
FatI CATG 2 cut(s) 39, 117
Fnu4HI GCNGC 1 cut(s) 313
Fsp4HI GCNGC 1 cut(s) 313
GluI GCNGC 1 cut(s) 313
GsuI CTGGAG 1 cut(s) 29
Hin1II CATG 2 cut(s) 43, 121
HinfI GANTC 1 cut(s) 4
Hpy166II GTNNAC 1 cut(s) 101
Hpy188I TCNGA 5 cut(s) 28, 134, 186, 219, 272
Hpy188III TCNNGA 2 cut(s) 8, 118
Hpy8I GTNNAC 1 cut(s) 101
HpyCH4III ACNGT 1 cut(s) 247
HpyF3I CTNAG 1 cut(s) 185
Hsp92II CATG 2 cut(s) 43, 121
KpnI GGTACC 1 cut(s) 23
Kzo9I GATC 2 cut(s) 129, 134
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 6 cut(s) 2, 48, 53, 68, 95, 249
LweI GCATC 1 cut(s) 269
MaeIII GTNAC 2 cut(s) 205, 286
MalI GATC 2 cut(s) 131, 136
MboI GATC 2 cut(s) 129, 134
MflI RGATCY 1 cut(s) 134
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 2 cut(s) 237, 304
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 2 cut(s) 4, 203
MroXI GAANNNNTTC 1 cut(s) 277
MspA1I CMGCKG 2 cut(s) 284, 315
MspR9I CCNGG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 83
NdeII GATC 2 cut(s) 129, 134
NlaIII CATG 2 cut(s) 43, 121
NlaIV GGNNCC 1 cut(s) 21
NspI RCATGY 1 cut(s) 43
PagI TCATGA 1 cut(s) 117
PcsI WCGNNNNNNNCGW 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 277
PkrI GCNGC 1 cut(s) 314
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PsiI TTATAA 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 21
PsuI RGATCY 1 cut(s) 134
PvuII CAGCTG 2 cut(s) 284, 315
RsaI GTAC 3 cut(s) 21, 44, 102
RsaNI GTAC 3 cut(s) 20, 43, 101
SatI GCNGC 1 cut(s) 313
Sau3AI GATC 2 cut(s) 129, 134
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 1 cut(s) 75
SetI ASST 5 cut(s) 18, 106, 253, 286, 317
SfaNI GCATC 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 2 cut(s) 237, 304
StyD4I CCNGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 247
TaqII GACCGA 1 cut(s) 80
TasI AATT 2 cut(s) 237, 304
TatI WGTACW 1 cut(s) 42
TseI GCWGC 1 cut(s) 312
XapI RAATTY 1 cut(s) 304
XceI RCATGY 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.