Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0020400

Physical Location & Seq

Genomic Coordinates Reverse (-)

13929499 .. 13930134

Gene Structure 636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00293740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAGTCTAGAGGAGCTGGTACCGTCAGACAAATCTCGCATGTACTCTATCTTTATTAGAACAGGGCTGGTGCTCTCTACCCTGGTGGTCGGTCTTTGTGTACCTTTCTTTGGTCTCATGATGTCATTGATCGGATCTTTATTCACAATGCTTGTAGCCTTGATACTTCCTTGTGCTTGTTATCTGAGTATCCTCAAGGGACGAGTAACTCGTTTTCAGATGATACTTTGTATTATAATTATTACAGTAGGTGTCGTAGCATCTGGTTTCGGAACATATTCAGCTGTAACTAAAATCGTAGAGAATTTGAGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

105

Amino Acids

11.37

Weight (kDa)

8.84

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	10 - 95	4.6e-13	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020400)

Species	Orthologous Gene IDs
malus_domestica	MD07G1171300.v1.1
rosa_chinensis	RchiOBHm_Chr1g0362821
rosa_multiflora	Rmu_sc0035177.1_g000001
rosa_roxburghii	Rroxscaffold_4G00293740
rosa_samantha	Rh1AG310500 Rh1DG304400

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	236
Acc65I	GGTACC	1 cut(s)	19
AccB1I	GGYRCC	1 cut(s)	19
AclWI	GGATC	1 cut(s)	142
AcsI	RAATTY	1 cut(s)	304
AfaI	GTAC	3 cut(s)	21, 44, 102
AfiI	CCNNNNNNNGG	1 cut(s)	110
AjnI	CCWGG	1 cut(s)	81
AluBI	AGCT	3 cut(s)	16, 284, 315
AluI	AGCT	3 cut(s)	16, 284, 315
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	1 cut(s)	142
ApeKI	GCWGC	1 cut(s)	312
ApoI	RAATTY	1 cut(s)	304
Asp700I	GAANNNNTTC	1 cut(s)	277
Asp718I	GGTACC	1 cut(s)	19
BanI	GGYRCC	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	83
BciVI	GTATCC	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	200
BisI	GCNGC	1 cut(s)	313
BlsI	GCNGC	1 cut(s)	314
Bme1390I	CCNGG	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	179
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMII	CTCAG	1 cut(s)	176
BseRI	GAGGAG	1 cut(s)	26
BshNI	GGYRCC	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmAI	GTCTC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	213
Bso31I	GGTCTC	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	2 cut(s)	129, 134
BspCNI	CTCAG	1 cut(s)	177
BspHI	TCATGA	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	1 cut(s)	142
BspT107I	GGYRCC	1 cut(s)	19
BspTNI	GGTCTC	1 cut(s)	119
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	2 cut(s)	129, 134
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	2 cut(s)	24, 247
BstDEI	CTNAG	1 cut(s)	185
BstKTI	GATC	2 cut(s)	132, 137
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	2 cut(s)	129, 134
BstNI	CCWGG	1 cut(s)	83
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BsuI	GTATCC	1 cut(s)	200
CciI	TCATGA	1 cut(s)	117
Csp6I	GTAC	3 cut(s)	20, 43, 101
CviAII	CATG	2 cut(s)	40, 118
CviJI	RGCY	5 cut(s)	16, 67, 158, 284, 315
CviKI_1	RGCY	5 cut(s)	16, 67, 158, 284, 315
CviQI	GTAC	3 cut(s)	20, 43, 101
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	2 cut(s)	131, 136
DpnII	GATC	2 cut(s)	129, 134
Eco31I	GGTCTC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	81
FaeI	CATG	2 cut(s)	43, 121
FaiI	YATR	4 cut(s)	41, 119, 236, 277
FaqI	GGGAC	1 cut(s)	213
FatI	CATG	2 cut(s)	39, 117
Fnu4HI	GCNGC	1 cut(s)	313
Fsp4HI	GCNGC	1 cut(s)	313
FspBI	CTAG	1 cut(s)	8
GluI	GCNGC	1 cut(s)	313
Hin1II	CATG	2 cut(s)	43, 121
HinfI	GANTC	1 cut(s)	4
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	5 cut(s)	28, 134, 186, 219, 272
Hpy188III	TCNNGA	2 cut(s)	8, 118
Hpy8I	GTNNAC	1 cut(s)	101
HpyCH4III	ACNGT	2 cut(s)	24, 247
HpyF3I	CTNAG	1 cut(s)	185
Hsp92II	CATG	2 cut(s)	43, 121
KpnI	GGTACC	1 cut(s)	23
Kzo9I	GATC	2 cut(s)	129, 134
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	6 cut(s)	2, 48, 53, 68, 95, 249
LweI	GCATC	1 cut(s)	269
MaeI	CTAG	1 cut(s)	8
MaeIII	GTNAC	2 cut(s)	205, 286
MalI	GATC	2 cut(s)	131, 136
MboI	GATC	2 cut(s)	129, 134
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	2 cut(s)	237, 304
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	2 cut(s)	4, 203
MroXI	GAANNNNTTC	1 cut(s)	277
MspA1I	CMGCKG	2 cut(s)	284, 315
MspR9I	CCNGG	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	83
NdeII	GATC	2 cut(s)	129, 134
NlaIII	CATG	2 cut(s)	43, 121
NlaIV	GGNNCC	1 cut(s)	21
NspI	RCATGY	1 cut(s)	43
PagI	TCATGA	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	208
PdmI	GAANNNNTTC	1 cut(s)	277
PkrI	GCNGC	1 cut(s)	314
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PsiI	TTATAA	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	21
PsuI	RGATCY	1 cut(s)	134
PvuII	CAGCTG	2 cut(s)	284, 315
RsaI	GTAC	3 cut(s)	21, 44, 102
RsaNI	GTAC	3 cut(s)	20, 43, 101
SatI	GCNGC	1 cut(s)	313
Sau3AI	GATC	2 cut(s)	129, 134
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	5 cut(s)	18, 106, 253, 286, 317
SfaNI	GCATC	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	2 cut(s)	237, 304
SspMI	CTAG	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	81
TaaI	ACNGT	2 cut(s)	24, 247
TaqII	GACCGA	1 cut(s)	80
TasI	AATT	2 cut(s)	237, 304
TatI	WGTACW	1 cut(s)	42
TseI	GCWGC	1 cut(s)	312
XapI	RAATTY	1 cut(s)	304
XbaI	TCTAGA	1 cut(s)	7
XceI	RCATGY	1 cut(s)	43
XmnI	GAANNNNTTC	1 cut(s)	277
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.